Vagococcus fluvialis: K5K99_10230
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Entry
K5K99_10230 CDS
T07851
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
vfv
Vagococcus fluvialis
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfv03019
]
K5K99_10230
03009 Ribosome biogenesis [BR:
vfv03009
]
K5K99_10230
Enzymes [BR:
vfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5K99_10230
Messenger RNA biogenesis [BR:
vfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5K99_10230
Ribosome biogenesis [BR:
vfv03009
]
Prokaryotic type
rRNA helicases
K5K99_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Kinesin
Microtub_bd
CMS1
Motif
Other DBs
NCBI-ProteinID:
UDM73302
LinkDB
All DBs
Position
complement(1963962..1965308)
Genome browser
AA seq
448 aa
AA seq
DB search
MNTFNQFNLKEYITNALEEKGFKEPTEVQKKLIPVIMQGKNVVGQSQTGSGKTHTFLLPM
METINPEKNEVQGIITTPSRELAEQIYQAAIQIAKHSPEEIRVAQYVGGTDKQRQMDKLK
SNQPHLVIGTPGRILDLINSNSLKSYTANYFVVDEADMTLDMGFLEDVDQIAATLPKDLQ
MLVFSATIPVKLQPFLKKYMENPVVEHIKPSSIISDTIDNWVISTKGKDVNNIIYQLLTI
GHPYLVMVFANTKQRVDEIATYLKEQGLKVATIHGDIPPRERKRVMKNIQNLDYQFVVAT
DLAARGIDIEGVSHVINAEIPTDLDFFIHRVGRTGRNGLEGTAITLYAPSDENQLAELEK
LGIEFHPKAIHAGEIKDSYHRDRRQKREKSQRQLDTTMIGMVQKKKKKVKPGYKKKINQA
ISHNEKKKRQLERRQTNRANRKARKEDF
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaatacattcaatcaatttaacctaaaagagtatattacaaatgctttagaagaaaaa
ggattcaaagaaccaacagaagtacagaaaaaactaatacctgttattatgcaaggtaaa
aacgtagtgggtcaatctcaaacaggttcagggaagacacatacatttttattaccaatg
atggaaactattaatcctgagaaaaatgaagttcaagggattattacaacaccaagtcgt
gagttagcagaacaaatttatcaagcggcaattcaaattgcaaaacattctccagaagaa
attagagtggcacaatatgtaggtggaactgataaacaacgtcaaatggacaaattaaaa
tcaaaccaacctcatttagtcattggaacaccaggacgtattttagatttaattaatagt
aactcacttaagtcttatacagctaattattttgttgtggatgaggctgatatgaccctt
gatatgggattcttagaagatgtagaccaaattgcggcgacattacctaaagacttacaa
atgctagtcttttcagcaacaattcctgttaaactacaaccattcttgaaaaagtatatg
gaaaatccagtagtagagcatattaaaccaagttcaattatctcagatacaatcgataac
tgggtaatttctactaaaggaaaagatgttaacaatatcatctatcaattactgacaatt
ggtcatccttacttagtaatggtatttgctaatacgaaacaacgtgttgatgaaattgca
acttacttaaaagagcaaggcttgaaagtagcgactattcatggagatattccaccacgt
gagagaaaacgtgtgatgaaaaatatccaaaatttagattatcaatttgttgttgcaact
gatttagcagctcgtggaattgatattgaaggtgtttctcatgtaattaatgctgagatt
ccaaccgatttagacttcttcattcaccgagttggtcgtactggacgtaacggtttagaa
ggaactgcgattacgttatacgcgccatcagatgaaaaccaattagctgaattagaaaaa
ttagggattgagttccatccaaaagcaatccacgctggagaaattaaagactcttaccat
cgtgatcgtcgtcaaaaacgtgagaaatctcaacgtcaattagacacaacaatgattggt
atggttcaaaagaaaaagaaaaaagttaaaccaggctacaagaaaaaaataaatcaagct
attagccacaatgagaagaaaaaacgtcaactagaaagacgtcaaactaaccgtgctaat
cgtaaagcaagaaaagaagatttttaa
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