KEGG   Vagococcus fluvialis: K5K99_12570
Entry
K5K99_12570       CDS       T07851                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
vfv  Vagococcus fluvialis
Pathway
vfv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vfv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    K5K99_12570 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vfv03400]
    K5K99_12570 (uvrB)
DNA repair and recombination proteins [BR:vfv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     K5K99_12570 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      K5K99_12570 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD SWI2_SNF2 AAA_30 Kinesin AAA_7 Microtub_bd TEX51 PMT2_N DUF87
Other DBs
NCBI-ProteinID: UDM73730
LinkDB
Position
complement(2458161..2460155)
AA seq 664 aa
MIERQTNNTFDLVSKYEPSGDQPEAIKQIVDNINKQEKAQTLLGVTGSGKTFTMSNVIKE
VNKPTLIIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
NDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGDPKEYQEQVLSLRVGMEMERDQLLRS
LVDIQFDRNDIDFQRGRFRVRGDVVEIFLASRDELALRVEFFGDEIDRIREFNALTGEVM
SDTEHVAIFPATHFVTNEDQMEEAIARIQDELDGRLKELRSDEKLLEAQRLEQRTNYDIE
MMREMGYCSGIENYSRQMENRKEGEPPYTLIDFFPDDFLIMVDESHVTMPQIRGMYNGDR
ARKQMLVDYGFRLPSALDNRPLQLSEFEDHVNQILYVSATPGPYEGEQTDLVAEQIIRPT
GLLDPIIDVRPIMGQIDDLVGEINERVEKNERVFITTLTKKMSEDLTDYFKELGIKVKYL
HSDIKTLERTEIIRDLRLGEFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLV
QTIGRAARNENGKVIMYADKMTDSMTKAIEETQRRRSIQEAYNKEHGIVPKTIIKEIRDL
IRISKDNEEEENVSLTEQYESLNKDEKKELLFELESQMKQAAKDLDFEKAATLRDTILEL
KSGK
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgattgaacgacaaacaaataatacctttgatttggtctcgaaatatgagccttctgga
gatcaaccagaagcaataaaacaaatagtagataatataaataaacaagaaaaagctcaa
actttattaggtgtaacaggttcaggaaaaacctttactatgtctaatgtgattaaggaa
gttaataagccaactcttataattgcccacaataaaacactagcaggacaattatattct
gagtttaaagaatttttccctaataatgcagtggaatattttgtaagttactacgattac
tatcaaccagaagcttacgttccttcaagtgatacttatattgaaaaagattcaagtgtc
aatgatgagattgataaactacgtcactcagccacaagctctttacttgagcgaaatgat
gtgattgttgtcgcatcagtttcttgtatttacggtttaggtgatccaaaagaataccaa
gagcaggttctttctttacgtgtcggtatggaaatggaaagagatcagttgctacgttct
ttagttgatattcaatttgaccgaaacgatattgattttcagcgtgggcgttttagagtt
cgtggagatgttgtggaaattttccttgcttctcgtgatgagcttgctcttcgtgttgag
tttttcggtgatgagattgatagaatccgagagtttaacgctttgacgggtgaagttatg
tcagacacagaacatgtagctattttcccggccactcactttgtgaccaatgaggatcag
atggaagaagccattgcgagaattcaagatgaattagatggacgcttaaaagaacttaga
agtgatgaaaaattgttagaggctcaaaggttagagcagcgaaccaattatgatattgaa
atgatgcgtgagatgggctattgttctggaattgaaaactactctagacaaatggaaaac
agaaaagaaggcgagccaccttatacgttaattgacttctttccagatgactttttaatt
atggtagatgagtctcatgtcacaatgccacaaattcgaggtatgtataacggagataga
gctagaaaacaaatgcttgttgattacggttttagattaccaagtgctttagataacaga
ccgctacaattgtcagagtttgaagatcatgtgaatcaaattctttatgtgtcagcaaca
cctggcccatatgaaggcgaacaaactgacttagtagcagagcaaatcattagaccaaca
ggtttacttgatccaattattgatgtgcgacctattatgggacaaattgatgatttagtt
ggagaaattaatgagcgagttgagaaaaatgagcgtgtctttattactaccttaactaaa
aaaatgtcagaagacttgacagattactttaaagaattaggtattaaagttaagtactta
catagtgatattaaaactttagagcgaacagaaattattcgtgacttacgtctaggtgag
tttgatgttttaattggaattaacttgttacgagaaggtattgatgtaccagaagtatct
ctagtagcaattcttgatgctgataaggaaggtttcttaagaagtgaacgttcacttgtc
caaacgattggacgagcagctcgtaatgaaaacggaaaagtaattatgtacgctgataag
atgactgattccatgactaaagctattgaggaaactcagcgaagaagaagtattcaggaa
gcttataataaagaacatggtattgttcctaaaacaatcataaaagaaattcgtgattta
attagaatctctaaagataatgaggaagaagaaaatgttagtttaacagaacaatatgag
tcacttaataaagatgagaaaaaagaattattatttgaattagaaagtcaaatgaaacaa
gcagccaaagacttagactttgaaaaagcagcaacactaagagatacaatacttgagttg
aagtctggcaagtaa

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