Vagococcus fluvialis: K5K99_14240
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Entry
K5K99_14240 CDS
T07851
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
vfv
Vagococcus fluvialis
Pathway
vfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5K99_14240 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfv03019
]
K5K99_14240 (rny)
Messenger RNA biogenesis [BR:
vfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K5K99_14240 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF2140
KH_2
UPF0154
FUT8_N_cat
Chordopox_G3
DUF3169
Motif
Other DBs
NCBI-ProteinID:
UDM74043
LinkDB
All DBs
Position
complement(2796126..2797679)
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AA seq
517 aa
AA seq
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MGLILLTIIGLIVGLTIGYFVSKSQHEKSIDGAKNTASGIIEQAKKEAETLQKEYLLEAK
EQNQNYRLEIESELKEERAELKNQENRLLQKENNLDRKDDAIEKRERSLEEKEEKIDSKR
QLIDEREQKVSELIEQQKEELEKVASLTKEEAKDIIMAETEEELTHERAMLVKDSEQRAK
EEADRKAKNMLSLAIQRCAADQVSELTVTVVTLPNDDMKGRIIGREGRNIRTLETLTGID
LIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREYG
ENAAFEVGVHSLHPDLIKTLGRMRFRTSYGQNVLNHSIEVAKLAGVLAEELGEDATLARR
AGLLHDIGKALDHEVDGSHVEIGTELVSKYKEHPVVINSVASHHGDVEATSVISVLVAAA
DALSAARPGARSESLENYIKRLERLENIANDFPGVDTSFAIQAGREIRVMVKPEEVTDDE
ATLLVREVRKRIENELEYPGHIKVTVVREVRAVDYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgatactcctcactatcatcggattaattgtaggtttaacaattggctacttt
gtttcaaaaagtcaacatgagaaatcaattgacggagctaaaaatactgcgtcaggcatt
attgaacaagcgaaaaaagaagctgaaactcttcaaaaagagtatttgttggaagctaaa
gaacagaatcaaaattaccgactagaaatcgaaagtgagctgaaggaagaaagagcagaa
ttaaaaaatcaagaaaatcgactattacaaaaagagaataatcttgatcgcaaagatgac
gctattgagaaacgcgaacgttcactcgaggaaaaagaggaaaaaattgattctaagaga
caattgattgatgagcgagaacaaaaagtatcagaattgattgaacagcaaaaagaggaa
cttgaaaaagtcgcatctttgaccaaggaagaagccaaagacattattatggctgaaact
gaagaagaattaactcatgaaagagctatgttagttaaggacagtgaacaacgagctaag
gaagaggcagatcgaaaagctaaaaatatgctttcacttgccatccagcgttgtgcagca
gaccaagtatcagaattaacagtaactgtggttacgttacctaatgatgatatgaaggga
cgaattatcggtcgagaaggtcgaaatattcgtacacttgaaacactaacaggaattgat
ttaattattgatgacacaccagaagcagtagtgctttcaggttttgatccaataagaaga
gaaatcgctcgtatgacgttagaaaaactaattcaagatggtagaattcacccagcacgt
attgaagaaatggttgagaaatctcgtaaagagatggatgagcgcattcgtgaatatggg
gagaatgcagcatttgaagtaggagttcattcattacatcctgacttaattaaaacatta
ggtcgcatgagatttagaactagttatggtcaaaatgtgttaaatcattcaatcgaagta
gctaaactagctggcgttttagctgaagagctaggtgaagatgcaacacttgctagacga
gcaggattacttcacgatataggtaaagccttagatcacgaagtagacggttcccatgta
gaaatcggaacagagcttgtaagtaagtataaagaacatccagtagtcatcaattcggta
gcctcgcatcatggtgatgtggaagctacatcagtaatttctgtattagtagcagcagcg
gatgctttatctgcagctagacctggtgcaagaagtgaatcattagaaaattacattaaa
cgtctagagcgtttagaaaatattgctaatgacttccctggtgttgacacaagtttcgct
atccaagctggtagagaaattagagtcatggttaaaccagaagaggtaactgatgatgaa
gcaactctcttagtaagagaagttagaaaacgaattgaaaacgaacttgaatatccaggt
catattaaagtgactgttgttagagaagttcgagctgttgattacgctaaataa
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