Viruses: 10446904
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Entry
10446904 CDS
T40000
Symbol
P1, CLRVsRNA1_gp1
Name
(RefSeq) Cherry leaf roll virus; polyprotein 1
Virus
12615
Cherry leaf roll virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
RdRP_4
Peptidase_C3
DUF5906
Ribosomal_L16
Motif
Other DBs
NCBI-GeneID:
10446904
NCBI-ProteinID:
YP_004382746
RS:
NC_015414
UniProt:
F4NCE2
LinkDB
All DBs
Position
NC_015414:12..6350
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AA seq
2112 aa
AA seq
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MVKPTVFSNGESVLPKALISEAREVAAFLKSTRNPAGFWVTFVAQGTSLSVSQVALCAIN
GIVCRQSVESHSNGPSAVAYWSALRAKLRSFLKGHGRWVTSLLAKCAEIFESRDLCRYQR
QRAAYLARGAALRAKALKKRKVALQKERATQLAQRQLEGERRAAARREREARKGLQTLRR
KLAALFCPPPPFPTTEWGWDFLPSSPLPAYRDFFTSPLLEEASVAPPPVGPVGFNKSTPQ
ALYVSVRARLATFSKATGALFPLVDYDRFCPGHLMMFQLMHRLVAAYMACPVLSLVEDGL
GALLRGDDYLFVFKNMMVAATQVVNKLSTCGRSAMQVQAGFGISNFFRGVGNSLASGFFE
GARQSAIDAKDFIIDGINWTADKTVGAFVRALRDEFSNSVGKYLNAVSEYKAQIENFWAW
AVRWSNNLMNKVDVSLRALQGSAFFAAALVIVGGIVYLIENLLPPAATGLPIGSLSSLFV
GGALLFWCGSELFQNEKVMNIRVAIVTMAERMFSKNKAVQSGNMTVQAGIQDIFGVPLTL
METIGSGLCGSALSSMTYVGKFGQAMDNIRKGVMCMRQFLGWMLEQLAELYDNVSGRKVA
FFRELATLAQVDVEKWISDVQEFLLVAEVAPEGDRVILDTVLLLLNKGHTIQRLLCQTKQ
GTSFNYGRLVATLVKSLDDVYTKYTKAGRRVMYRFVPFWAYFFGKARTGKTIFANNFKNT
MVQYLGTTSENIFYKNARDQFWPKYRQQAIVIVDDLSAVENPPSLESEFIQLMSTMPYGL
NMAAVDEKGSEFNSKMVITTSNKYTAPSCAKIHDMDAFNLRRHACVEVRRIEGVLYDPKN
PYLSSEARFVNNQDQAPEGEWMAMEQMQEELIARYQRHHEAQVDEYNFWKKNARNTHDVF
DILEEKIKEEGFWLSSAEFCMPDRASQGVSAADRFLGVDGKIIKYDALSFEGAYFDGKHL
AKSAQDLEHLAMVKYHEFSDLLRAWSVNGVVRQFMEQLLTGPTHVDSANALNLDALPSHR
EFFDSMTLPKRAVLRLIQKKVDMIKAGPAFEFTPTKGFTLAKVLKDGYDYVYNNGGKIFL
IFAAVVILWFLCGTAMHLLRQIFCGGVGAGSAGAMMKMSVQSTIPSGSDVQSYASRNLRR
VYRPTRLGLQSAMNPVETVSQAEQLMAWIDTPQGNLISCCRFKARSLAMTYHQARAIAPG
AKIFITYMTAAGTPSVPLEHIWDPQETAPTPNLRRFNDTEVCVYTHPQLSPLPGPLESMF
VEDMQAGPSVYHIEGRVMKLVRDSHEFLPNDFVGAPEEIVPHVWSGVVHLNTHALTIDNY
KWGGDYKINIPRSLVGSYPNAKEDCGGLLFAKIHNSYKVIGMHVSGEQLADGSYLSAAAL
LPRPSLFMSAQSGLRTLTIEAGKDTRGVSKVGFIKAEEIPRAPRKSSFIEVEEELKVPVP
PGVPLKQIAILSNSDERLKGTQFEGYDPLRQATVKCEDPMFDLRSDVLEDVLEDVLETWF
DCAPSLSLLSDEEMVNGNDEEVFLDAVVHSTSEGYPYVLERGPGEKGKERYLEQDPALPE
GKLRVRPGTSVHRDLLALEKSIHFTIPILVGMEIPKDERLKESKILTPATRTFTVLPMPY
NLLLRKYFGRCVAFLQGNRHRLPCAVGINPYSNEWTRIFDGLARVSPKALNGDYKGFDGK
LNFQMYDAIARLLCCLHRDESTSTARYNLILAMYARYSLCGSQVYEVRAGLPSGCAITVI
MNSIFNEILIRYAYRVSVGPILRNRFSHFVKLIVYGDDNLIAVDPQLASGTFAGYEGGKM
VVTDVFDGATIQKVLAQVNITITDGSDKNAKEWHFKSLESLDFLKRGFKRMADGRVLAPL
DLSAIFSSLHVVRPDQGSTAAAVNINARVALRELWLHQDQNLFEMVREFYKRHNFVDLPT
WRECRDFHQSQYSEWQPFKEYKFLELPLPEQENREFMENHATRKSVCVVADQTIVVGPAW
KPSNPEGFFVVDLLGPTCGRGGNVTNIPTYGDGSGRLGTATWVRNWRSAKKQPIVQLAIQ
ARKEGKIIAFRDAAPFLNGWNAAIAFCEGLGMDSNDLIAVYSRSGGLHRSLIERNFKAAS
FEPRKVAPGVFA
NT seq
6339 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagcccacagtgttctcaaacggcgagtccgttctacccaaagccctcatttct
gaggctagggaggttgcagccttcctaaagtccaccagaaaccccgcaggtttctgggtt
acatttgttgcacagggtacctccctgtcggtttctcaagtggcactttgtgccattaac
ggcatcgtgtgccgtcagtccgtggagtctcactccaatggaccgtcggccgttgcctat
tggtccgctctcagggccaagcttagatccttcttgaagggtcacggtcggtgggttacc
agcctgctggccaaatgtgccgagattttcgaatcgcgggacctctgccgttaccagcgg
cagagagctgcatacctcgcgagaggtgcagcgttgagggctaaggccctcaagaaaagg
aaagttgccctccagaaggagcgggcaacccaactggcccagcgccagctggaaggagaa
cgccgggcagcggctcggcgggaaagagaggcccgtaagggccttcagactttgcgccgc
aagcttgcggccctcttctgtcctcctcctcccttccccactactgagtggggctgggat
tttctcccttcttcccccctcccggcttaccgggatttcttcacgtctcctctacttgag
gaggcttctgttgctccacctcccgtggggcccgtgggctttaataagtccacaccacag
gcactttatgtgtctgtgcgtgcccggttggctactttttctaaagccacgggtgcgctt
ttccctttggtcgattacgaccgtttttgtcccgggcacttgatgatgtttcaattgatg
catcgtcttgttgctgcctacatggcgtgtcccgttctctctttagtggaggatgggcta
ggggcccttttacggggggacgattatctgtttgtttttaaaaacatgatggtagccgct
actcaagttgtaaataaattgagcacttgtggtagatcggctatgcaagttcaggctggt
tttggcatctcaaatttttttagaggtgttggaaactctctggctagtggcttctttgag
ggtgctaggcagagcgccattgatgccaaggattttataatcgatggtatcaattggaca
gccgataagacggttggagcatttgtcagagctctccgcgacgagttttcgaactccgtc
gggaagtatctgaacgcagtgtccgagtacaaagcacaaattgaaaatttttgggcttgg
gcagtgcgatggtctaacaatcttatgaacaaagtagatgttagtcttagagctttacag
ggatctgctttttttgctgcggcccttgtaatagttgggggcattgtatatttaatagaa
aatttgctccctccagcagccactggattaccaataggcagcctctcctctctttttgtc
gggggggcccttcttttttggtgtggctctgagctgttccagaatgagaaggttatgaat
attcgcgtggccattgtaacaatggctgagcgtatgttcagcaaaaataaagccgtgcag
tccggcaatatgactgttcaagctggaatccaagatatatttggggttcccttgacactc
atggagactattggctcaggtctctgtgggagtgctctctcttccatgacttacgtcggg
aagtttgggcaggccatggacaacatccgtaagggtgttatgtgtatgcgccaattcttg
ggctggatgttagaacagcttgcagagctctatgataatgttagcggccgcaaggttgct
ttctttagagagctcgcgacgttagcgcaagttgacgtcgaaaagtggatatctgacgtc
caagagttcttactcgttgcggaagtagcgccagagggtgacagggtcattttagatacc
gtgttactccttcttaataaagggcatactatccagcgtctgctatgccagacgaagcaa
gggacctcttttaattatggtcgccttgttgccactctcgtcaagtctttggatgatgta
tatacgaaatacaccaaggctgggcgacgtgtgatgtacaggtttgtacctttctgggcc
tatttttttggaaaagcccggactgggaaaacaatttttgccaacaattttaaaaatacc
atggttcagtaccttggtactacgagcgagaatattttttataaaaacgctcgtgatcaa
ttctggcccaagtacagacaacaggccatagttatagttgacgacttaagcgcggtggag
aatccaccgagcttggagtcggaatttatccagctgatgagtaccatgccttatggtctc
aatatggcagctgttgatgagaaaggtagtgaatttaattcgaaaatggtaatcactacc
tcaaataaatatacagcgccaagctgtgcaaaaatacacgatatggacgcctttaacttg
cggcgacatgcgtgtgttgaggtaaggcgtattgagggagtcctttatgaccccaaaaac
ccttatctctcctcagaggcccggtttgtcaacaaccaggatcaggcccctgaaggtgag
tggatggctatggagcaaatgcaagaagagctcatagcccgctatcagcgccatcatgag
gcgcaggtagatgaatacaatttttggaagaagaatgccagaaatacccatgatgtcttt
gatattctcgaagagaaaatcaaagaagagggtttctggctttcttctgccgaattttgt
atgcctgaccgtgctagccaaggtgttagtgctgccgaccgctttttgggtgtcgacggc
aagatcattaaatacgatgccctcagttttgagggggcgtattttgatgggaaacacctc
gccaaaagtgcccaagatttggagcacttagcaatggtcaagtaccatgagttttcggac
ctcttacgggcatggtccgtcaacggagtggtgcgccagttcatggagcaactcctgact
ggtcccactcatgtggacagcgctaatgcactaaacttagatgccctgccgtctcataga
gaattttttgattctatgaccctaccaaaaagggctgttttgaggcttatccagaaaaaa
gtggatatgatcaaagcgggacccgcttttgaatttacccccacaaagggtttcactcta
gccaaggtcctgaaggatggctacgattatgtatataataatggcgggaaaatcttttta
attttcgccgccgtagttattctatggtttttgtgtgggaccgccatgcatctacttcgc
caaattttttgtggtggcgtaggggccggttctgcaggggccatgatgaaaatgtctgta
cagtcgacaattccatcaggctctgatgtgcagtcgtacgcatcgcgcaatttgcgtcgt
gtgtacaggccaaccaggctgggtttacaatctgcgatgaaccctgtggaaactgtttca
caggcagagcagttgatggcgtggatagacacccctcaagggaatcttatctcatgctgt
cgctttaaggcccgatctctagccatgacgtaccaccaggctagggctatcgccccaggg
gccaaaatttttatcacatatatgactgcagccggcacgccaagcgtgccgctggagcat
atatgggatccacaagagaccgctcctactcctaatttacggcggtttaatgatactgag
gtttgcgtgtacacgcaccctcagttgtctcctctcccgggccctctcgaatccatgttc
gtggaggatatgcaagcaggcccatcggtgtatcacatcgaagggagggtcatgaaattg
gtacgagactcccatgagtttctgcccaacgattttgttggcgctcctgaggagatcgtg
ccacacgtctggtcaggcgtggtacatttgaacacccacgccctcactattgataactat
aagtggggaggtgactataaaataaatatccctaggtcgttagtgggttcgtaccccaac
gccaaggaggattgcggcggccttttattcgccaaaatccataattcctacaaggttata
gggatgcacgtttctggggagcagctagcggatgggtcgtatctgtctgctgccgccctt
ctcccgagaccgagcttatttatgtcggcacagtcgggcttgcgcaccttgacgattgag
gctggcaaggatacgcgtggtgtttccaaggtcggttttattaaggccgaggaaatacca
cgcgctcctcgcaaatcctcctttattgaggtggaagaagagctgaaggtcccagttcct
cctggtgtgcctttgaaacaaatagccatcttgtctaactcggatgagcgccttaagggc
actcaatttgaggggtatgatccgcttaggcaggcaactgtcaagtgcgaggacccaatg
ttcgatttaagatcggacgttttggaagatgtgctagaggacgtgctagaaacctggttt
gattgcgcaccctcgttaagtcttctttccgatgaagagatggttaatggcaacgacgaa
gaggttttcctcgatgctgtcgtccattccacttcggagggatatccctacgtcctcgaa
agagggccaggggagaagggcaaggaaaggtatctcgaacaagatcctgccttgccagaa
ggcaaattgagggtccgtcccgggacttctgtgcacagggacttgctcgccctagaaaag
agcatccacttcaccatccccattttagttgggatggagatacctaaggatgaaagactc
aaagagtccaaaatccttacaccggcaacccgtactttcacggtgttgcccatgccctac
aacctcctgctccgtaaatatttcggcaggtgtgttgctttcttacagggcaataggcat
agattgccttgcgcagtcgggataaacccttactccaacgagtggacccgaatttttgat
gggttggctcgagtgtcgcctaaggcactaaatggagactataaagggttcgacggcaag
ttgaactttcaaatgtatgatgctatagcgcgccttttatgctgcttacatcgtgatgag
agtacttcaactgccaggtataacttgatactcgctatgtatgcccggtactccctgtgt
gggagccaggtgtatgaagtgagggcagggttaccctctggctgcgcaattaccgttatc
atgaactcgatttttaatgagattctgatacggtacgcctatagagtttcggttgggcct
attttgcgcaataggttcagccactttgttaagttgattgtctatggggatgacaatttg
atagctgtagatccccaactcgcctccggaacctttgctggttatgaagggggtaaaatg
gtagtcaccgatgtttttgatggtgctactatacaaaaagttctggcccaagttaacatt
actataactgatgggtcagacaagaatgccaaagagtggcattttaaatcattggagtct
ctcgattttttaaagagaggtttcaagagaatggctgatggccgagtgttggcaccactc
gacttgagcgccattttttcctcgctgcatgttgtgcgcccagatcagggctccacagct
gcagccgtaaatattaacgctagagtggccttgcgcgaactctggttacaccaggaccaa
aatctttttgaaatggtccgggaattttacaaacgccacaattttgtggatttacccacg
tggcgcgaatgtagggattttcatcagtcccaatattccgagtggcagccttttaaagaa
tataaattcttagagctgcccctccccgagcaagagaacagggagtttatggaaaaccat
gccacgaggaaaagtgtgtgcgtggtcgcggatcagaccatagtcgtaggtcccgcgtgg
aagccctccaacccagagggtttttttgttgtagatctattgggtccaacctgtgggcgt
ggcggaaatgtcaccaacatacccacgtatggtgatggatctggcaggttgggtactgcc
acctgggtgcgtaactggcgctctgcgaagaaacaacctattgtccagttagccatccag
gctaggaaggaaggcaaaattatagccttccgggatgcagctccattcctcaatgggtgg
aatgctgctatagccttttgcgagggtctcggcatggattcaaatgatctaattgccgtg
tactctcgttctgggggcttgcaccgctctttgatagagcgtaacttcaaggctgcaagc
tttgagccacgtaaagtggctccaggcgtgttcgcctag
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