Viruses: 11027168
Help
Entry
11027168 CDS
T40000
Symbol
POLY, HCV4_gp1
Name
(RefSeq) Hepatitis C virus genotype 4; polyprotein
KO
K19358
Hepatitis C virus polyprotein
Virus
33745
Hepatitis C virus genotype 4
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
HCV_NS1
RdRP_3
HCV_env
HCV_NS5a_C
NS3_helicase_C
HCV_NS2
HCV_NS4b
Peptidase_S29
HCV_capsid
HCV_core
HCV_NS5a_1b
HCV_NS4a
HCV_NS5a_1a
HCV_NS5a
Flavi_DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
11027168
NCBI-ProteinID:
YP_001469632
RS:
NC_009825
UniProt:
O39929
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_009825:280..9306
Genome browser
AA seq
3008 aa
AA seq
DB search
MSTNPKPQRKTKRNTNRRPMDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRG
RRQPIPKARRPEGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRGRSRNLG
KVIDTLTCGFADLMGYIPLVGAPVGSVARALAHGVRALEDGINYATGNLPGCSFSIFLLA
LLSCLTVPASAVNYRNVSGIYHVTNDCPNSSIVYEADHHIMHLPGCVPCVREGNQSRCWV
ALTPTVAAPYIGAPLESLRSHVDLMVGAATVCSGLYIGDLCGGLFLVGQMFSFRPRRHWT
TQDCNCSIYTGHITGHRMAWDMMMNWSPTTTLVLAQVMRIPTTLVDLLSGGHWGVLVGVA
YFSMQANWAKVILVLFLFAGVDAETHVSGAAVGRSTAGLANLFSSGSKQNLQLINSNGSW
HINRTALNCNDSLNTGFLASLFYTHKFNSSGCSERLACCKSLDSYGQGWGPLGVANISGS
SDDRPYCWHYAPRPCGIVPASSVCGPVYCFTPSPVVVGTTDHVGVPTYTWGENETDVFLL
NSTRPPHGAWFGCVWMNSTGFTKTCGAPPCEVNTNNGTWHCPTDCFRKHPETTYAKCGSG
PWITPRCLIDYPYRLWHFPCTANFSVFNIRTFVGGIEHRMQAACNWTRGEVCGLEHRDRV
ELSPLLLTTTAWQILPCSFTTLPALSTGLIHLHQNIVDVQYLYGVGSAVVSWALKWEYVV
LAFLLLADARVSAYLWMMFMVSQVEAALSNLININAASAAGAQGFWYAILFICIVWHVKG
RFPAAAAYAACGLWPCFLLLLMLPERAYAYDQEVAGSLGGAIVVMLTILTLSPHYKLWLA
RGLWWIQYFIARTEAVLHVYIPSFNVRGPRDSVIVLAVLVCPDLVFDITKYLLAILGPLH
ILQASLLRIPYFVRAQALVKICSLLRGVVYGKYFQMVVLKSRGLTGTYIYDHLTPMSDWP
PYGLRDLAVALEPVVFTPMEKKVIVWGADTAACGDIIRGLPVSARLGNEILLGPADTETS
KGWRLLAPITAYAQQTRGLFSTIVTSLTGRDTNENCGEVQVLSTATQSFLGTAVNGVMWT
VYHGAGAKTISGPKGPVNQMYTNVDQDLVGWPAPPGVRSLAPCTCGSADLYLVTRHADVI
PVRRRGDTRGALLSPRPISILKGSSGGPLLCPMGHRAGIFRAAVCTRGVAKAVDFVPVES
LETTMRSPVFTDNSTPPAVPQTYQVAHLHAPTGSGKSTKVPAAHAAQGYKVLVLNPSVAA
TLGFGVYMSKAYGIDPNIRSGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECYS
TDSTTILGIGTVLDQAETAGVRLTVLATATPPGSVTTPHSNIEEVALPTTGEIPFYGKAI
PLELIKGGRHLIFCHSKKKCDELARQLTSLGLNAVAYYRGLDVSVIPTSGDVVVCATDAL
MTGFTGDFDSVIDCNTSVIQTVDFSLDPTFSIEITTVPQDAVSRSQRRGRTGRGRLGTYR
YVTPGERPSGMFDTAELCECYDAGCAWYELTPAETTTRLKAYFDTPGLPVCQDHLEFWES
VFTGLTHIDGHFLSQTKQSGENFPYLVAYQATVSAKVWLAPPSWDTMWKCLIRLKPTLHG
PTPLLYRLGSVQNEVVLTHPITKYIMACMSADLEVVTSTWVLVGGVLAALAAYCLSVGSV
VIVGRVVLSGQPAVIPDREVLYQQFDEMEECSKHLPLVEHGLQLAEQFKQKALGLLNFAG
KQAQEATPVIQSNFAKLEQFWANDMWNFISGIQYLAGLSTLPGNPAIASLMSFTAAVTSP
LTTQQTLLFNILGGWVASQIRDSDASTAFVVSGLAGAAVGSVGLGKILVDILPGYGAGVR
GAVVTFKIMSGEMPSTEDLVNLLPAILSPGALVVEVVCPAILRRHVGPGEGAVQWMNRLI
AFASRGNHVSPTHYVPESDAARRVTTILSSLTVTSLLRRLHKWINEDCSTPCAESWLWEV
WDWVLHVLSDFKTCLKAKFVPLMPGIPLLSWPRGYKGEWRGDGVMHTTCPCGADLAGHIK
NGSMRITGPKTCSNTWHGTFPINAYTTGPGVPIPAPNYKFALWRVSAEDYVEVRRVGDFH
YVTGVTQDNIKFPCQVPAPELFTEVDGIRIHRHAPKCKPLLRDEVSFSVGLNSFVVGSQL
PCEPEPDVAVLTSMLTDPSHITAESARRRLARGSRPSLASSSASQLSPRLLQATCTAPHD
SPGTDLLEANLLWGSTATRVETDEKVIILDSFESCVAEQNDDREVSVAAEILRPTKKFPP
ALPIWARPDYNPPLTETWKQQDYQAPTVHGCALPPAKQPPVPSPRRKRTVQLTESVVSTA
LAELAAKTFGQSEPSSDRDTDLTTPTETTDSGPIVVDDASDDGSYSSMPPLEGEPGDPDL
TSDSWSTVSGSEDVVCCSMSYSWTGALVTPCAAEESKLPISPLSNSLLRHHNMVYATTTR
SAVTRQKKVTFDRLQVVDSTYNEVLKEIKARASRVKPRLLTTEEACDLTPPHSARSKFGY
GKKDVRSHSRKAINHISSVWKDLLDDNNTPIPTTIMAKNEVFAVNPAKGGRKPARLIVYP
DLGSRVCEKRALHDVIKKTALAVMGAAYGFQYSPAQRVEFLLTAWKSKNDPMGFSYDTRC
FDSTVTEKDIRVEEEVYQCCDLEPEARKVITALTDRLYVGGPMHNSKGDLCGYRRCRATG
VYTTSFGNTLTCYLKATAAIRAAALRDCTMLVCGDDLVVIAESDGVEEDNRALRAFTEAM
TRYSAPPGDAPQPAYDLELITSCSSNVSVAHDVTGKKVYYLTRDPETPLARAVWETVRHT
PVNSWLGNIIVYAPTIWVRMILMTHFFSILQSQEALEKALDFDMYGVTYSITPLDLPAII
QRLHGLSAFTLHGYSPHELNRVAGALRKLGVPPLRAWRHRARAVRAKLIAQGGRAKICGI
YLFNWAVKTKLKLTPLPAAAKLDLSGWFTVGAGGGDIYHSMSHARPRYLLLCLLILTVGV
GIFLLPAR
NT seq
9027 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaatcctaaacctcaaagaaaaaccaaacgtaacaccaaccgccgcccaatg
gacgttaagttcccgggtggtggccagatcgttggcggagtttacttgttgccgcgcagg
ggccccagattgggtgtgcgcgcgactcggaagacttcggagcggtcgcaacctcgtgga
agacgccaacctatccccaaggcgcgtcgacccgagggaaggtcctgggcacaaccagga
tatccatggcctctttacggtaatgagggttgtgggtgggcaggatggctcttgtccccc
cgtggctctcgaccgtcttggggcccaaatgatccccgcgggaggtcccgcaatttgggt
aaggtcatcgataccctaacctgcggcttcgccgacctcatgggatacatcccgctcgta
ggcgcccccgtgggtagcgtcgccagggccctggcacatggtgtcagggctttggaggac
gggatcaattatgcaacagggaatctccccggttgctccttttctatcttcctcttggca
cttctttcgtgcctgactgtccccgcttcggccgttaactatcgcaatgtctcaggcatc
taccatgtcaccaatgactgcccgaattcaagcatagtgtatgaggccgaccatcacatc
atgcaccttccaggttgcgtgccctgcgtgagagaggggaatcagtcacgctgctgggtg
gcccttactcctaccgtcgcagcgccatacatcggcgcaccgcttgagtccttacggagt
catgtggatttgatggtgggggccgccactgtctgctcgggtctttacatcggggacctg
tgtggcggcttgttcctagttggccagatgttttcattccgaccacggcgccactggacc
acccaggattgcaattgttccatctacacagggcacattacaggccacagaatggcctgg
gacatgatgatgaactggagtccaacaaccaccttagttctcgcccaggtcatgaggatc
ccaaccactctggtagacttactctctggaggccactggggtgtcctcgtgggggtggcc
tatttcagcatgcaggccaattgggccaaagtcatcttggtcctattcctctttgcaggg
gttgatgccgagactcacgtgtctggggcagcagtcggccggagtaccgccggcttggct
aacctcttttcttctgggtctaagcagaatttacagctcatcaacagcaatgggagctgg
catataaataggactgcccttaactgcaatgacagcttaaacactgggttcttggctagc
ttgttctacacccacaagtttaacagctcagggtgttccgaacggctcgcgtgctgcaag
agccttgacagctacggccaaggctggggcccactcggggtcgctaacatcagcggctcg
tctgatgacaggccttattgctggcactacgcgcctcggccatgcgggattgtgccagca
tccagtgtgtgtggccccgtgtattgtttcactcccagccctgtcgtggtcggtactact
gatcacgtcggggtccctacttacacctggggggagaacgagactgatgtcttccttttg
aactcgaccagaccgccgcatggtgcgtggtttggatgcgtgtggatgaacagtaccggg
ttcaccaaaacctgtggcgcccctccatgcgaggttaacaccaataatgggacctggcac
tgccccaccgattgcttcaggaagcatccggagactacctacgccaagtgcggatcaggg
ccttggatcacaccacgctgcctgattgattacccgtaccggctgtggcatttcccgtgc
accgccaacttctccgtctttaacatcaggacatttgtcggcggtatagagcatcggatg
caagcggcatgcaactggaccaggggggaagtctgtggcttggagcacagggatcgggta
gagctatcacccctgctccttaccactacagcgtggcagatcctcccctgctctttcacc
actttacctgccctctccaccggcttgatccacctccaccaaaatatcgtggacgtccag
tacctctatggtgttggatctgcagtggtatcttgggcccttaagtgggaatatgtggtg
ctcgcgttcctgcttctcgcggacgcgagagtctctgcctacctatggatgatgtttatg
gtaagtcaagttgaggcggctctgtccaacctaattaacatcaatgctgcttcagccgct
ggtgcccaaggcttctggtacgccatcctcttcatctgcattgtctggcatgtcaagggc
cggttcccagctgctgctgcctacgcagcctgcgggctgtggccctgttttctcctgctt
ctgatgctgcctgagagggcttatgcatacgaccaggaagtggcagggtcccttggcggc
gccatcgttgtcatgctgaccattctgacactgtctccgcactacaagttatggctggct
aggggattgtggtggatccaatattttatagctaggaccgaggctgtgctgcatgtctat
attccatccttcaacgtgcgcgggcctcgcgactcagtgattgttcttgcagtcctggtc
tgtccagacctagtatttgacatcacaaaatatcttctggccatcttagggcccctccac
atactccaggcctcgctcctacgcatcccttactttgtgagggcacaagcgctggttaag
atctgcagcttgttgcgtggggtagtttatggcaagtacttccaaatggtcgtgcttaaa
agcaggggcctgactggtacttacatctatgaccaccttactcccatgtcagattggccg
ccttacggcctccgcgatttggcggtggccctagagccagttgtgttcacgcccatggag
aagaaagtcatcgtctggggcgctgacaccgctgcgtgcggagacatcataaggggatta
cctgtttcggccaggttgggcaatgagatcttgctcggaccagccgatacagaaacatca
aaggggtggagactccttgcccccatcacagcatacgcncagcagacccgcggcttgttc
agcaccatcgtaacgagcctcactggcagggacaccaatgagaattgtggcgaagtgcag
gtcttatccaccgctacgcagtccttcctgggtactgcggttaacggcgtgatgtggacc
gtctaccacggggcgggtgccaagaccatcagcggcccgaagggacctgtcaatcaaatg
tacactaatgttgaccaagacttggtggggtggccagcaccccccggagtcagatctctt
gctccgtgcacctgcggctcggcagacttgtatctagtcaccaggcacgcggatgtaata
cccgtgcgcaggagaggagacaccagaggagctctcttgagccctagaccaatatccatt
cttaagggatcttccggaggtccgctgctgtgccccatgggacaccgcgccggcatattc
cgtgcggcggtgtgtactcggggggtagccaaggcggtagacttcgtcccggttgaatct
cttgagactaccatgagatcaccagtgttcactgacaactcaacacccccagcagtgccc
cagacctaccaggtcgcgcacctacacgcaccaacaggaagtggcaagagcactaaggtc
ccggcggcgcatgctgcccaaggctataaagtgctagtgctcaatccttcggttgcggcc
acactgggttttggggtatacatgtccaaggcatatggcatcgacccgaacatccggtcg
ggagtcaggaccatcaccacgggtgcgccaatcacgtactcaacgtatggtaagttcctg
gctgatggaggttgcagcggaggggcatacgacataatcatctgtgacgagtgctattcc
actgactccacaacgatccttggcataggcacagtcctggaccaagcggagaccgctgga
gtgcgcctcaccgtgctcgcgactgctactccgccagggtcagtgactacacctcattcc
aacatagaggaggtcgccctgccaacaacgggggaaatacccttttacggcaaggcgatc
cctctggagctgatcaaggggggcagacatctcatcttctgccattcaaagaaaaagtgc
gatgaactggccagacaactgacatctcttggtctgaatgccgtagcctactacagaggc
ttagacgtttcggtgattcccacgtctggggacgtcgtggtatgcgccacggacgccctc
atgacgggtttcaccggcgactttgactcagtgatagactgcaatacatctgtgatacag
actgttgacttcagcttggaccccaccttctccatagagattacaaccgttccccaggac
gcggtatcccgcagccagcggagaggccgcactggtagggggaggttgggcacataccgg
tatgtcaccccgggagagagaccatcaggcatgtttgacactgcagagctttgcgagtgc
tacgatgccgggtgcgcctggtacgagctgacacctgctgaaaccacaacaaggctgaaa
gcttacttcgacacaccaggccttcctgtgtgccaagaccatctggaattctgggagagc
gtctttacagggttaacccacatagacggtcatttcctatcccagaccaagcaatcgggt
gagaatttcccgtatcttgttgcttaccaagcgacggtgtcggccaaggtctggctcgct
ccaccaagctgggacaccatgtggaagtgcctaattcgccttaagcccaccctgcacggg
cccacgcccctcctctacagactggggtctgtgcagaatgaagtggtgctcacccatccc
atcaccaaatacatcatggcttgcatgtcagctgatctcgaggtagtgacaagtacgtgg
gtcttggtgggcggcgtcctggcagctctggctgcttactgtctttcagtgggcagcgta
gtgattgttgggagagtcgtcctgtcgggccaacctgctgtcattcctgatcgcgaagtg
ctctaccaacagttcgacgaaatggaggagtgttccaaacacctcccactagtcgagcac
gggttacaactggctgagcagttcaagcagaaggccttaggtctcctaaatttcgctggc
aagcaagcccaagaggcaacaccagtgatccagtctaacttcgctaaacttgagcagttt
tgggcgaacgacatgtggaatttcatcagcggcattcaatatctcgctggactgtctact
ttgccaggcaatcctgccattgcttccctcatgtcctttactgctgccgttacaagccct
ctgaccacccaacaaaccctcctttttaacatcttggggggatgggtggcctcacagatt
cgcgactccgatgcttctaccgcattcgtcgtgagcggcttggcgggggcggcagttggc
agtgtgggccttggcaaaattttggtggacattctgcccggttacggcgccggcgtacgt
ggcgctgtggttaccttcaagatcatgagcggcgagatgccttccacagaggacttggta
aatttgctcccggccattctatcgcccggagcattggtggtggaggtggtatgcccggcg
attttgcgccgccacgtgggcccgggcgaaggggccgtgcagtggatgaaccgtctaatt
gcgttcgcatcgcgaggcaatcacgtgtctcccacgcattacgtccctgagtccgacgcg
gcacgccgcgtgaccaccatactatcatccctcactgtgacatcccttctcagacgcctc
cacaagtggatcaatgaagattgctccaccccatgtgccgaatcttggctatgggaggta
tgggattgggtcttgcacgtgctgagtgacttcaagacgtgcttaaaagcaaagttcgtg
cccttaatgccaggcatccccctcctctcatggccaagaggctataagggagagtggcgc
ggagatggcgtgatgcatacgacatgcccctgcggagcagatctggcaggtcacatcaag
aacggctcgatgagaatcaccgggccgaaaacctgcagcaacacatggcatggaaccttc
cccatcaatgcctacaccacaggccctggtgtacccatcccggctccgaactacaagttc
gcgctttggagggtgtccgccgaggactacgtggaggttcgcagagtgggtgatttccat
tatgtcaccggggtaacacaagacaacatcaagttcccctgccaagttccggccccagag
ctcttcacggaagtggacggcatcaggatacaccgccacgcccctaagtgcaaacccttg
ctgcgggacgaagtgtcgttctcagtaggactcaattcgttcgtagtgggatcacaactc
ccatgcgagccagagccggacgtggcagtgctaacatccatgctgacagacccatcacac
ataacggcggaatcggcgcgtcggagattggctcgagggtcacgaccctcgctagctagt
tcctcggcgagtcagctttcgccccgtcttcttcaggccacgtgtaccgctccccatgac
tcccctggtactgatctcctcgaggctaacctcttgtgggggtctaccgctaccagggtt
gagacggacgagaaggtaataatactagactcttttgagtcatgtgtggctgagcaaaat
gatgacagggaagtctcggttgccgcggaaatcctgcgtccgaccaagaagttccctcca
gcactaccgatctgggcccggccggactacaatccacctcttaccgagacgtggaagcag
caggactaccaagctccgaccgtccacggttgcgctctgcctccggcaaagcagccccct
gttccctctcccaggaggaaacggacggtacagctcactgagtccgttgtttctaccgct
ttggcagagctggccgcaaagacctttggccagtcagagccgagctcagaccgtgataca
gaccttaccaccccaactgagaccacagactcgggccccatcgtcgtggatgatgcatcc
gatgacggatcttattcgtcaatgcctccactagagggggagcccggtgacccggacttg
acatcagactcttggtccactgttagcggatcggaggacgtcgtgtgctgttcgatgtca
tactcgtggactggggcgcttgtaacaccttgcgcggctgaagaatcaaagctgccaatt
agccccctgagcaattcacttttgcgccatcacaatatggtgtatgccacgaccacccgt
tctgctgtgacacggcagaagaaggtgaccttcgaccgcctgcaggtggtggacagtacc
tacaatgaagtgcttaaggagataaaggcacgagcatccagagtgaagccacgcttgctt
accacagaggaagcttgcgacctgacgcccccccactcagccagatcaaagttcggctac
gggaaaaaggatgttcggagccattcccgcaaggccattaaccacatcagctccgtgtgg
aaggacttgctggacgacaacaataccccaattccaacaacaatcatggccaaaaatgag
gtcttcgctgtgaacccagcgaagggaggtcggaagcctgctcgcctgatcgtgtatccg
gatctcggatcccgggtttgcgagaagagagcgcttcacgacgtcatcaaaaaaactgcc
ttagccgtgatgggagccgcttatggcttccaatactccccagcgcagcgggtggaattt
cttctgactgcttggaagtcgaagaacgacccaatggggttctcttatgatacccgctgc
tttgactccactgtaaccgaaaaggacatcagggtcgaggaagaggtctatcagtgttgt
gacctggagcccgaagcccgcaaagtcatcaccgccctcacagatagactctatgtgggc
ggccctatgcacaacagcaagggagacctttgtgggtatcggagatgtcgcgcaaccggc
gtctacaccaccagcttcgggaacacgctgacgtgctatctcaaagccacggccgccatc
agggcggcggcgctgagagactgcactatgttggtttgcggtgatgacttagtcgtcatc
gctgagagcgacggcgtagaggaggacaaccgagccctccgagccttcacggaggctatg
acgagatactcggctcccccaggtgacgctccgcagccagcatatgacctggaactaata
acatcatgttcatccaacgtctcagtcgcgcacgacgtgacgggtaaaaaggtatattac
ctaacccgagaccctgaaactcccttggcgcgagctgtatgggagacagtccgacacact
ccagtcaattcctggttgggaaacatcatagtctacgctcccacaatatgggtgcgcatg
atattgatgacccactttttctcaatactccagagccaggaagcccttgagaaagcactc
gacttcgatatgtacggagtcacctactctatcactccgctggatttaccggcaatcatt
caaagactccatggcttaagcgcgttcacgctgcacggatactctccacacgaactcaac
cgggtggccggagccctcagaaaacttggggtacccccgctgagagcgtggagacatcgg
gcccgagcagtccgcgctaagcttatcgcccagggaggtagagccaaaatatgtggcata
tacctctttaactgggcggtaaaaaccaaactcaaactcactccattgcctgccgctgcc
aaactcgatttatcgggttggtttacggtaggcgccggcgggggagacatttatcacagc
atgtctcatgcccgaccccgctatttactcctgtgcctactcatacttacagtaggggta
ggcatcttcctgctgcctgctcggtag
DBGET
integrated database retrieval system
