Viruses: 11027170
Help
Entry
11027170 CDS
T40000
Symbol
POLY, HCV5_gp1
Name
(RefSeq) Hepatitis C virus genotype 5; polyprotein
KO
K19358
Hepatitis C virus polyprotein
Virus
33746
Hepatitis C virus genotype 5
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
HCV_NS1
RdRP_3
HCV_NS5a_C
HCV_env
NS3_helicase_C
HCV_NS2
HCV_NS4b
Peptidase_S29
HCV_capsid
HCV_NS5a_1b
HCV_core
HCV_NS5a_1a
HCV_NS4a
HCV_NS5a
Flavi_DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
11027170
NCBI-ProteinID:
YP_001469633
RS:
NC_009826
UniProt:
O39928
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_009826:280..9324
Genome browser
AA seq
3014 aa
AA seq
DB search
MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPKLGVRATRKNSERSQPRG
RRQPIPKARRPTGRSWGQPGYPWPLYANEGLGWAGWLLSPRSSRPNWGPNDPRRKSPNLG
RVIHTLTCGFPHLMGYIPLVGGPVGGVSRALAHGVKVLEDGINYATGNLPGCPFSIFVLA
LLWCLTVPASAVPYRNASGVYHVTNDCPNSSIVYEADNLILHAPGCVPCVLEDNVSRCWV
QITPTLSAPSFGAVTALLRRAVDYLAGGAAFCSALYVGDACGALSLVGQMFTYKPRQHTT
VQDCNCSIYSGHITGHRMAWDMMMKWSPTTALLMAQLLRIPQVVIDIIAGGHWGVLLAAA
YFASTANWAKVILVLFLFAGVDGRTHTVGGTVGQGLKSLTSFFNPGPQRQLQFVNTNGSW
HINSTALNCNDSLQTGFIAGLMYAHKFNSSGCPERMSSCRPLAAFDQGWGTISYATISGP
SDDKPYCWHYPPRPCGVVPARDVCGPVYCFTPSPVVVGTTDRRGCPTYNWGSNETDILLL
NNIRPPAGNWFGCTWMNSTGFVKNCGAPPCNLGPTGNNSLKCPTDCFRKHPDATYTRCGS
GPWLTPRCLVHYPYRLWHYPCTVNYTIFKVRMFIGGLEHRLEAACNWTYGERCDLEDRDR
AELSPLLHTTTQWAILPCSFTPTPALSTGLIHLHQNIVDTQYLYGLSSSIVSWAVKWEYI
MLVFLLLADARICTCLLILLLICQAEATCKNVIVLNAAAAAGNHGFFWGLLVVCLAWHVK
GRLVPGATYLCLGVWPLLLVRLLRPHRALALDSSDGGTVGCLVLIVLTIFTLTPGYKKKV
VLVMWWLQYFIARVEAIIHVWVPPLQVKGGRDAVIMLTCLFHPALGFEITKILFGILGPL
YLLQHSLTKVPYFLRARALLRLCLLAKHLVYGKYVQAALLHLGRLTGTYIYDHLAPMKDW
AASGLRELTVATEPIVFSAMETKVITWGADTAACGNILAVLPVSARRGREIFLGPADDIK
TSGWRLLAPITAYAQQTRGVLGAIVLSLTGRDKNEAEGEVQFLSTATQTFLGICINGVMW
TLFHGAGSKTLAGPKGPVVQMYTNVDKDLVGWPSPPGKGSLTRCTCGSADLYLVTRHADV
IPARRRGDTRASLLSPRPISYLKGSSGGPIMCPSGHVVGVFRAAVCTRGVAKALEFVPVE
NLETTMRSPVFTDNSTPPAVPHEFQVGHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVA
ATFGFGAYMSRAYGVDPNIRTGVRTVTTGAGITYSTYGKFFADGGCSGGAYDVIICDECH
SQDATTILGIGTVLDQAETAGARLVVLATAIPPGSVTTPHPNIEEVALPSEGEIPFYGRA
IPLVLIKGGRHLIFCHSKKKCDELAKQLTSLGVNAVAYYRGLDVAVIPATGDVVVCSTDA
LMTGFTGDFDSVIDCNSAVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRHGIY
RYVSSGERPSGIFDSVVLCECYDAGCAWYDLTPAETTVRLRAYLNTPGLPVCQEHLEFWE
GVFTGLTNIDAHMLSQAKQGGENFPYLVAYQATVCVRAKAPPPSWDTMWKCMICLKPTLT
GPTPLLYRLGAVQNEITLTHPITKYIMACMSADLEVITSTWVLVGGVVAALAAYCLTVGS
VAIVGRIILSGRPAITPDREVLYQQFDEMEECSASLPYVDEARAIAGQFKEKVLGLIGTA
GQKAETLKPAATSMWSKAEQFWAKHMWNFVSGIQYLAGLSTLPGNPAVATLMSFTAAVTS
PLTTHQTLLFNILGGWVASQIAPPTAATAFVVSGMAGAAVGNIGLGRVLIDILAGYGTGV
AGALVAFKIMCGERPTAEELVNLLPSILCPGALVVGVICAAVLRRHIGPGEGAVQWMNRL
IAFASRGNHGSPTHYVPETDASAKVTQLLSSLTVTSLLKRLHTWIGEDYSTPCDGTWLRA
IWDWVCTALTDFKAWLQAKLLPQLPGVPFFSCQKGYKGVWRGDGVNSTKCPCGATISGHV
KNGTMRIVGPKLCSNTWQGTFPINATTTGPSVPAPAPNYKFALWRVGAADYAEVRRVGDY
HYITGVTQDNLKCPCQVPSPEFFTELDGVRIHRFAPPCNPLLREEVTFSVGLHSYVVGSQ
LPCEPEPDVTVLTSMLSDPAHITAETAKRRLNRGSPPSLANSSASQLSAPSLKATCTIQG
HHPDADLIKANLLWRQCMGGNITRVEAENKVEILDCFKPLKEEEDDREISVSADCFKKGP
AFPPALPVWARPGYDPPLLETWKRPDYDPPQVWGCPIPPAGPPPVPLPRRKRKPMELSDS
TVSQVMADLADARFKVDTPSIEGQDSALGTSSQHDSGPEEKRDDNSDAASYSSMPPLEGE
PGDPDLSSGSWSTVSGEDNVVCCSMSYTWTGALITPCSAEEEKLPINPLSNTLLRHHNLV
YSTSSRSAGLRQKKVTFDRLQVLDDHYREVVDEMKRLASKVKARLLPLEEACGLTPPHSA
RSKYGYGAKEVRSLDKKALKHIEGVWQDLLDDSDTPLPTTIMAKNEVFAVEPSKGGKKPA
RLIVYPDLGVRVCEKRALYDVAQKLPTALMGPSYGFQYSPAQRVDFLLKAWKSKKIPMAF
SYDTRCFDSTITEHDIMTEESIYQSCDLQPEARVAIRSLTQRLYCGGPMYNSKGQQCGYR
RCRASGVFTTSMGNTMTCYIKALASCRAAKLRDCTLLVCGDDLVAICESQGTHEDEASLR
AFTEAMTRYSAPPGDPPVPAYDLELVTSCSSNVSVARDASGNRIYYLTRDPQVPLAKAAW
ETAKHSPVNSWLGNIIMYAPTLWARIVLMTHFFSVLQSQEQLEKTLAFEMYGSVYSVTPL
DLPAIIQRLHGLSAFSLHSYSPSEINRVASCLRKLGVPPLRAWRHRARAVRAKLIAQGGR
AAICGIYLFNWAVKTKRKLTPLADADRLDLSSWFTVGAGGGDIYHSMSRARPRNLLLCLL
LLSVGVGIFLLPAR
NT seq
9045 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaatcctaaacctcaaagaaaaaccaaaagaaacaccaaccgccgcccacag
gacgtcaagttcccgggcggtggtcagatcgttggtggagtttacttgttgccgcgcagg
ggccctaaattgggtgtgcgcgcgactcggaagaattcggaacggtcgcaaccccgtgga
cggcgccagcctattcccaaggcgcgccgacccacgggccggtcctggggtcaacccggg
tacccttggcccctttacgccaatgaaggcctcgggtgggcagggtggttgctctccccc
cgaagctctcggcctaattggggccccaatgacccccggcggaaatcccccaatttgggt
agggtcatccataccctaacgtgcggattcccccacctcatggggtacatcccgctcgta
ggcggccccgttgggggcgtctcaagggctctcgcacacggtgtgaaggttcttgaagac
gggataaactatgcaacagggaatctacccggttgccctttctctatctttgtccttgca
cttctttggtgcctgaccgtccccgcttccgcagttccttaccgtaatgcttctggggtt
tatcatgtcactaatgattgccccaactcttccatagtctacgaggccgacaacctgatc
ttacacgcacctggttgtgtgccctgtgtcctggaagataatgtcagtaggtgctgggtc
caaatcacccccacgctgtcagccccgagcttcggagcagtcacggcccttcttcggaga
gccgttgactacttagcaggaggggctgccttctgctccgcgttatacgtcggagacgcg
tgtggggcattatccttggtaggccaaatgttcacctataagcctcgccagcatactacg
gtgcaggactgcaactgttccatttacagtggccatattaccggccaccggatggcatgg
gacatgatgatgaaatggtcccctacgacggccctgctgatggcccagttgttgcggatt
ccccaggtggtcattgacatcattgccgggggccactggggggtcctgctcgccgccgca
tactttgcgtcaacggctaactgggccaaggttatactggtcttgtttctgtttgcagga
gttgatggccgcacccatactgtgggcggtactgttggtcaaggtctgaagtcccttacc
agtttctttaaccccgggccgcagcggcagttgcagttcgtaaataccaacgggagctgg
catatcaatagtactgcccttaactgtaatgacagcctccagaccgggtttatagccggc
ctcatgtatgcccataaattcaactcttctgggtgtccagaacggatgtctagctgtagg
ccccttgccgcattcgaccaaggctggggaactatcagctatgccaccatatcgggcccc
agtgatgacaagccgtattgctggcactatcccccacgaccgtgcggggtggtgccagcc
cgggatgtctgcggtccagtctactgtttcacacctagcccagtggtcgttggcactact
gaccgcagagggtgtcccacttataactggggcagcaacgagactgacatccttctcttg
aataacattaggccccccgctggcaactggttcggctgcacctggatgaactccacgggg
tttgtgaagaattgcggagctccgccctgcaacttagggccaacaggcaacaacagcctt
aagtgtcctactgattgcttccgcaagcacccagacgccacctacaccagatgtgggtca
ggaccctggctcaccccccggtgtttggtgcactacccttaccggttgtggcattacccg
tgcaccgtaaattacaccatctttaaggtgcgcatgttcatcggaggcctagagcacagg
cttgaagcggcatgcaattggacctatggtgagcggtgtgaccttgaagacagagatagg
gccgagttgagcccgctcctgcacaccaccacacagtgggccatattgccgtgctccttc
acacctacgcccgctcttagcactggtcttatacacctacatcagaatatagtagacacc
caatacctctacggcctgagctccagcatcgtctcgtgggccgttaagtgggaatacata
atgctggtctttttactacttgctgatgcccgtatctgcacttgcctgttgatcttgctc
ctaatctgtcaggcagaagcaacctgcaagaacgtcattgtcctaaacgcggctgcggcc
gcagggaatcatgggttcttctggggcctgctcgttgtgtgcttggcttggcatgtcaag
ggcaggttggtccctggggccacctacctttgcttgggcgtttggccactactcttagtc
cgtctcctccggccccacagggccctggccctggactcaagcgatggcgggactgtgggt
tgtcttgtgctaattgttcttacaatctttacacttacccctgggtacaaaaagaaggta
gtgctggtcatgtggtggcttcagtatttcatagcccgagtggaggccatcatccacgtg
tgggtgcccccgttgcaggttaagggtggtcgtgacgctgtcatcatgctcacatgcctc
ttccaccctgccttggggtttgagatcacaaaaatcctcttcgggatactgggccccttg
tacctgctgcaacattcactcaccaaggtcccctacttcctcagggcgcgcgccctgctg
aggctgtgcctactagcaaagcacctggtttatggcaagtacgtgcaggcggccttgctc
caccttggtaggctgaccggaacctacatttatgaccatcttgcccccatgaaggattgg
gcagcgtctgggctccgcgaattaacggtggccacagaacccatcgtattctccgcgatg
gagacgaaggtcatcacgtggggggctgacacggccgcgtgtgggaacatacttgctgtt
cttccggtatcagctagacggggccgcgaaattttcctggggccggccgacgacatcaag
acgtcgggttggcgactcctcgcccctatcaccgcgtatgcgcagcagacgcgaggggta
ctgggcgccatagttctcagcctgaccggccgggacaaaaatgaagccgagggtgaggtg
cagttcttatccacggcaacacaaacgtttcttggcatttgtatcaatggagtgatgtgg
acactcttccatggggccggttctaagacccttgctggccccaaaggcccggtagtgcag
atgtacaccaatgtagacaaagacctggtggggtggccttccccccctggaaagggttcg
ctcacccggtgtacttgcgggtcggcggatctgtacctggttaccaggcatgcagacgtc
attcccgcccgtagacggggcgacactcgcgcctccttgctcagcccgagacccatcagt
tacctcaagggttcctcgggtggcccgatcatgtgcccttccgggcatgtggtaggtgtt
ttcagggccgccgtgtgcacgcggggtgttgcgaaggcgctcgagttcgtcccggtcgaa
aacctggagaccacgatgcgctcacctgtgttcactgacaacagtacgccccctgcagtc
cctcatgagttccaagtggggcacctccatgcacccaccggaagcgggaagagcacaaag
gtgcccgccgcttacgcggcccaagggtacaaggtgctggtgctaaacccgtccgtcgca
gcaacgttcgggttcggggcatacatgtcaagagcatacggcgtggaccccaacatcagg
accggagttaggactgtcaccaccggagccggtataacatactctacttatggcaagttc
ttcgccgacggggggtgctcgggcggcgcgtatgacgtaatcatatgcgacgagtgccat
tcccaggacgctaccaccatccttgggataggcacagtccttgaccaggcagagacggct
ggagctaggctcgttgtcttggcgacggccattccccccggcagtgtaacgacgccccac
cccaacattgaggaggtggccctgccttcggagggggaaatccccttctacggcagagcc
atcccccttgttcttataaagggcggtaggcatctcatcttctgccactctaagaaaaaa
tgtgatgaacttgccaaacaattgaccagtctgggcgtgaatgccgtggcatattataga
ggtctagacgtcgccgtcatacccgcgacaggagacgtagtcgtgtgcagcactgacgcg
ctcatgacgggttttaccggcgactttgattctgtcatagactgcaactccgccgtcact
cagacggtggacttcagtctggatcccaccttcaccattgagactactacagtgccccag
gacgcagtgtccagaagccagcgtaggggccgtacagggagaggtaggcacggcatatac
cggtatgtttcgtctggggagagaccgtccggcattttcgactctgtggtgctctgtgag
tgctacgatgccgggtgtgcatggtatgatctgactcctgctgagactaccgtgaggttg
cgtgcttacctgaacacccccgggctccctgtctgtcaagaacatctggaattctgggaa
ggggtgttcacagggcttactaacatcgacgcccacatgctgtcacaggcaaagcagggt
ggggaaaacttcccataccttgtggcataccaagcaacagtctgtgttcgtgcgaaggcg
cccccccccagctgggatacaatgtggaagtgcatgatctgtctcaaaccgactttaact
ggccccactcccctcctgtacaggctgggggccgttcagaatgagatcacactgacacac
cccatcaccaagtacatcatggcttgcatgtccgcagacttggaggtcattaccagcact
tgggtcttggtagggggtgttgtggcggccttagcggcctactgcttgacggtgggctcg
gtggccatagtcggtagaatcatcctatctgggagacctgcgatcacccctgacagggag
gtactataccagcaatttgatgagatggaggagtgctcagcctccttgccctatgtggac
gaggcacgtgccatcgccgggcaatttaaggagaaagtgcttggcctcattggcacggct
ggccagaaagctgaaactctgaaaccggcagctacgtccatgtggagcaaggccgagcag
ttctgggcaaagcatatgtggaactttgtcagtgggatccaataccttgctggcctttcg
accttgccgggtaatcccgccgtggccacgttgatgtctttcaccgccgcggtgacctcc
cctcttacaacacatcagaccctcctttttaatattctaggagggtgggtggcctcacag
atcgcgccacccacggccgccaccgcgttcgtcgttagtggaatggccggggccgcagtc
ggtaacatcgggctgggtagggtccttattgacatcctagctgggtatggaacaggggtg
gctggggcgctcgtcgccttcaagatcatgtgtggggaaaggccgacagccgaagaactg
gtaaacctcctgccttcaatactctgccctggagccctagtggttggtgtcatatgcgcc
gccgttctgcggcgccacattggcccaggcgagggggctgtacagtggatgaataggctg
attgcgttcgcttcccggggcaatcatgggtctccgacacactacgtgcccgagacggac
gcgtcggctaaggtcacgcaactgctcagctccctcacagtaacatctcttctgaagagg
ctccacacgtggatcggtgaagactattccacgccctgtgatggtacatggcttagggcc
atttgggactgggtctgcacggcactgacagacttcaaagcctggctgcaggcaaaactc
ctcccgcaactccccggagtgcccttcttctcatgccagaaggggtacaagggtgtatgg
cgcggggatggagtgaactccaccaagtgtccttgcggagcgacgatatctggtcacgtg
aagaacggaaccatgagaatcgtcggcccgaagctgtgcagtaacacctggcaaggcacc
ttcccaatcaacgccacaacaacagggcccagcgtacctgccccggcccccaactacaag
ttcgccttgtggagggtgggcgccgcggactacgcggaggtgcgccgtgtaggggactac
cactacataacgggggtgacacaagacaatctgaagtgtccctgccaggtaccatctcca
gagttcttcacggagctggatggcgtgaggattcaccgcttcgcgccaccctgtaacccc
ctcctaagggaggaggttactttctccgtggggttgcactcctacgtggtagggtcccaa
ctaccctgtgagccagaacctgatgtgaccgtcttaacatcaatgctgtcagatcccgcc
cacatcacggcggaaacggccaagcgcaggctaaatcgagggtctccaccctctctggca
aactcctcggccagtcagctctcagccccctctctcaaggccacctgcactatacaaggc
caccacccagatgcagacctcataaaggctaatctgctatggagacagtgcatgggaggc
aatatcacgcgagtagaggctgagaacaaggtcgagatccttgactgcttcaagccgctc
aaagaggaagaagatgacagagagatctccgtgtccgccgactgctttaagaagggaccg
gcgtttccccccgctctgccagtgtgggcaaggccggggtatgacccgcccctcttggag
acttggaagcgaccggattatgacccccctcaggtgtggggctgcccgataccacctgcg
ggccccccgcctgtcccgcttccgcggaggaaaaggaagccaatggaactatctgattct
accgtgtcccaagtcatggccgacttggcggacgccaggttcaaggtcgacacaccatcc
attgaaggccaggattctgcgttgggtactagcagccaacacgattcggggcctgaggag
aagcgtgatgacaactcggacgcggcttcatattcttccatgcctccgctagagggcgaa
cctggggaccctgacctttcgtcagggtcatggtcaaccgtcagcggtgaggacaacgtg
gtgtgttgctccatgtcatacacctggactggggcgctcatcaccccttgctctgctgaa
gaggaaaaattacccatcaatcccttaagcaacaccttattacgccaccacaatcttgtg
tactccacctcctctcggagtgcgggtctgaggcagaaaaaggtcacttttgacaggcta
caagtcctcgacgaccactacagagaggttgtggacgagatgaagcgattagcctccaag
gttaaggccagactactgcccctagaggaagcctgtgggttaacaccaccccactccgcc
cgttccaagtacggatacggcgcgaaggaagttcgctctctcgacaagaaagcccttaag
cacatagagggtgtgtggcaagacttattggatgactctgataccccattgccgacaacc
atcatggcaaaaaacgaagtgttcgcagtggagccgtctaagggggggaagaagcctgca
cggctgatagtctaccccgaccttggagtccgcgtctgcgagaagcgggctttgtacgac
gtagctcaaaaactgccgacagcccttatggggccctcgtatgggtttcagtactcccca
gcgcagcgggttgacttcttactgaaggcgtggaaatctaagaagatccccatggctttc
tcctatgacacccgctgctttgactcgaccattaccgaacatgacataatgactgaagag
tccatttaccaatcatgtgacttgcagcctgaggcgcgcgtggcaatacggtcactcacc
caacgcctgtactgtggaggcccaatgtataacagcaagggccagcaatgtggttatcgt
agatgccgcgccagcggcgtcttcaccactagtatgggcaacaccatgacgtgctacatt
aaggctttagcctcctgtagagctgcaaagctccgggactgcacgctcctggtatgtggt
gacgaccttgtggccatctgcgagagccaggggacacacgaagatgaagcgagcctgaga
gccttcactgaggctatgaccaggtactccgctcccccgggtgatcccccggttccagct
tatgacctggagctcgtaacatcttgctcctcgaacgtgtccgtcgcccgcgatgcttca
ggcaacagaatttactatctcacgcgtgacccgcaggtaccacttgcgaaggctgcgtgg
gaaactgccaaacactccccggttaattcctggctagggaacatcatcatgtacgcgccg
accttgtgggctcggatagtgctgatgacgcactttttcagcgttctacagagccaggaa
cagctggaaaaaaccctagcatttgaaatgtatgggtcagtttattctgttactccgctg
gatcttccagctatcattcaaagactccatggacttagcgcgttttcactccattcatac
tctccgagcgagatcaatagggtggctagttgcctcaggaagcttggggtaccccctttg
agagcttggagacatcgggctcgagctgtacgcgctaagctcatcgcccagggaggtagg
gccgccatctgcggcatctatctcttcaactgggcggtgaagacaaaacgcaaactcact
ccattagctgacgctgaccggctggacttgtccagctggttcaccgttggcgctggcggg
ggggacatttatcacagcatgtcccgtgcccgaccccgcaacttactcctgtgcctactc
ctacttagcgtaggggtaggcatctttttactccccgctcggtga
DBGET
integrated database retrieval system
