Viruses: 11027172
Help
Entry
11027172 CDS
T40000
Symbol
POLY, HCV2_gp1
Name
(RefSeq) Hepatitis C virus genotype 2; polyprotein
KO
K19358
Hepatitis C virus polyprotein
Virus
40271
Hepatitis C virus genotype 2
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
HCV_NS1
RdRP_3
HCV_env
HCV_NS2
NS3_helicase_C
HCV_NS4b
HCV_NS5a_C
Peptidase_S29
HCV_capsid
HCV_core
HCV_NS5a_1b
HCV_NS5a_1a
HCV_NS4a
HCV_NS5a
RdRP_1
Flavi_DEAD
DUF2628
DEAD
ResIII
Apo-CIII
Motif
Other DBs
NCBI-GeneID:
11027172
NCBI-ProteinID:
YP_001469630
RS:
NC_009823
UniProt:
Q9QF35
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_009823:341..9442
Genome browser
AA seq
3033 aa
AA seq
DB search
MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRG
RRQPIPKDRRSTGKSWGKPGYPWPLYGNEGLGWAGWLLSPRGSRPSWGPNDPRHRSRNVG
KVIDTLTCGFADLMGYIPVVGAPLGGVARALAHGVRVLEDGVNFATGNLPGCSFSIFLLA
LLSCITTPVSAAEVKNISTGYMVTNDCTNDSITWQLQAAVLHVPGCVPCEKVGNASQCWI
PVSPNVAVQRPGALTQGLRTHIDMVVMSATLCSALYVGDLCGGVMLAAQMFIVSPQHHWF
VQDCNCSIYPGTITGHRMAWDMMMNWSPTATMILAYAMRVPEVIIDIISGAHWGVMFGLA
YFSMQGAWAKVVVILLLAAGVDARTHTVGGSAAQTTGRLTSLFDMGPRQKIQLVNTNGSW
HINRTALNCNDSLHTGFIASLFYTHSFNSSGCPERMSACRSIEAFRVGWGALQYEDNVTN
PEDMRPYCWHYPPRQCGVVSAKTVCGPVYCFTPSPVVVGTTDRLGAPTYTWGENETDVFL
LNSTRPPLGSWFGCTWMNSSGYTKTCGAPPCRTRADFNASTDLLCPTDCFRKHPDTTYLK
CGSGPWLTPRCLIDYPYRLWHYPCTVNYTIFKIRMYVGGVEHRLTAACNFTRGDRCNLED
RDRSQLSPLLHSTTEWAILPCSYSDLPALSTGLLHLHQNIVDVQFMYGLSPALTKYIVRW
EWVILLFLLLADARVCACLWMLILLGQAEAALEKLVILHAASAASCNGFLYFVIFFVAAW
YIKGRVVPLATYSLTGLWSFSLLLLALPQQAYAYDASVHGQIGAALLVMITLFTLTPGYK
TLLSRFLWWLCYLLTLGEAMVQEWAPPMQVRGGRDGIIWAVAIFYPGVVFDITKWLLAVL
GPAYLLKGALTRVPYFVRAHALLRMCTMARHLAGGRYVQMALLALGRWTGTYIYDHLTPM
SDWAASGLRDLAVAVEPIIFSPMEKKVIVWGAETAACGDILHGLPVSARLGREVLLGPAD
GYTSKGWSLLAPITAYAQQTRGLLGTIVVSMTGRDKTEQAGEIQVLSTVTQSFLGTSISG
VLWTVYHGAGNKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTKSLEPCTCGAVDLYLVTRN
ADVIPARRRGDKRGALLSPRPLSTLKGSSGGPVLCPRGHAVGVFRAAVCSRGVAKSIDFI
PVETLDIVTRSPTFSDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPVAYAAQGYKVLVLNP
SVAATLGFGAYLSKAHGINPNIRTGVRTVTTGAPITYSTYGKFLADGGCAGGAYDIIICD
ECHAVDSTTILGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGQEGEIPFY
GRAIPLSYIKGGRHLIFCHSKKKCDELAAALRGMGLNSVAYYRGLDVSVIPTQGDVVVVA
TDALMTGYTGDFDSVIDCNVAVTQVVDFSLDPTFTITTQIVPQDAVSRSQRRGRTGRGRL
GIYRYVSTGERASGMFDSVVLCECYDAGAAWYELTPSETTVRLRAYFNTPGLPVCQDHLE
FWEAVFTGLTHIDAHFLSQTKQSGENFAYLTAYQATVCARAKAPPPSWDVMWKCLTRLKP
TLVGPTPLLYRLGSVTNEVTLTHPVTKYIATCMQADLEVMTSTWVLAGGVLAAVAAYCLA
TGCVCIIGRLHINQRAVVAPDKEVLYEAFDEMEECASRAALIEEGQRIAEMLKSKIQGLL
QQASKQAQDIQPTVQASWPKVEQFWAKHMWNFISGIQYLAGLSTLPGNPAVASMMAFSAA
LTSPLSTSTTILLNILGGWLASQIAPPAGATGFVVSGLVGAAVGSIGLGKVLVDILAGYG
AGISGALVAFKIMSGEKPSMEDVVNLLPGILSPGALVVGVICAAILRRHVGPGEGAVQWM
NRLIAFASRGNHVAPTHYVTESDASQRVTQLLGSLTITSLLRRLHNWITEDCPIPCGGSW
LRDVWDWVCTILTDFKNWLTSKLFPKMPGLPFVSCQKGYKGVWAGTGIMTTRCPCGANIS
GNVRLGSMRITGPKTCMNIWQGTFPINCYTEGQCVPKPAPNFKVAIWRVAASEYAEVTQH
GSYHYITGLTTDNLKVPCQLPSPEFFSWVDGVQIHRFAPTPKPFFRDEVSFCVGLNSFVV
GSQLPCDPEPDTDVLMSMLTDPSHITAETAARRLARGSPPSEASSSASQLSAPSLRATCT
THGKAYDVDMVDANLFMGGDVTRIESGSKVVVLDSLDPMVEERSDLEPSIPSEYMLPKKR
FPPALPAWARPDYNPPLVESWKRPDYQPATVAGCALPPPRKTPTPPPRRRRTVGLSEDSI
GDALQQLAIKSFGQPPPSGDSGLSTGAGAADSGSQTPPDELALSETGSISSMPPLEGELG
DPDLEPEQVEPQPPPQGGVAAPGSDSGSWSTCSEEDDSVVCCSMSYSWTGALITPCSPEE
EKLPINPLSNSLLRYHNKVYCTTTKSASLRAKKVTFDRMQVLDSYYDSVLKDIKLAASKV
TARLLTMEEACQLTPPHSARSKYGFGAKEVRSLSGRAVNHIKSVWKDLLEDSETPIPTTI
MAKNEVFCVDPTKGGKKAARLIVYPDLGVRVCEKMALYDITQKLPQAVMGASYGFQYSPA
QRVEFLLKAWAEKKDPMGFSYDTRCFDSTVTERDIRTEESIYRACSLPEEAHTAIHSLTE
RLYVGGPMFNSKGQTCGYRRCRASGVLTTSMGNTITCYVKALAACKAAGIIAPTMLVCGD
DLVVISESQGTEEDERNLRAFTEAMTRYSAPPGDPPRPEYDLELITSCSSNVSVALGPQG
RRRYYLTRDPTTPIARAAWETVRHSPVNSWLGNIIQYAPTIWARMVLMTHFFSILMAQDT
LDQNLNFEMYGAVYSVSPLDLPAIIERLHGLDAFSLHTYTPHELTRVASALRKLGAPPLR
AWKSRARAVRASLISRGGRAAVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGGG
DIYHSVSRARPRLLLFGLLLLFVGVGLFLLPAR
NT seq
9102 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaatcctaaacctcaaagaaaaaccaaaagaaacaccaaccgtcgcccacaa
gacgttaagtttccgggcggcggccagatcgttggcggagtatacttgttgccgcgcagg
ggccccaggttgggtgtgcgcgcgacaaggaagacttcggagcggtcccagccacgtgga
aggcgccagcccatccctaaagatcggcgctccactggcaaatcctggggaaaaccagga
tacccctggcccctatacgggaatgagggactcggctgggcaggatggctcctgtccccc
cgaggttcccgtccctcttggggccccaatgacccccggcataggtcgcgcaacgtgggt
aaggtcatcgataccctaacgtgcggctttgccgacctcatggggtacatccctgtcgtg
ggcgccccgctcggcggcgtcgccagagctctcgcgcatggcgtgagagtcctggaggac
ggggttaattttgcaacagggaacttacccggttgctccttttctatcttcttgctggcc
ctgctgtcctgcatcaccaccccggtctccgctgccgaagtgaagaacatcagtaccggc
tacatggtgactaacgactgcaccaatgacagcattacctggcagctccaggctgctgtc
ctccacgtccccgggtgcgtcccgtgcgagaaagtggggaatgcatctcagtgctggata
ccggtctcaccgaatgtggccgtgcagcggcccggcgccctcacgcagggcttgcggacg
cacatcgacatggttgtgatgtccgccacgctctgctctgccctctacgtgggggacctc
tgcggtggggtgatgctcgcagcccaaatgttcattgtctcgccgcagcaccactggttt
gtccaagactgcaattgctccatctaccctggtaccatcactggacaccgcatggcatgg
gacatgatgatgaactggtcgcccacggctaccatgatcttggcgtacgcgatgcgtgtc
cccgaggtcattatagacatcattagcggggctcattggggcgtcatgttcggcttggcc
tacttctctatgcagggagcgtgggcgaaagtcgttgtcatccttctgttggccgccggg
gtggacgcgcgcacccatactgttgggggttctgccgcgcagaccaccgggcgcctcacc
agcttatttgacatgggccccaggcagaaaatccagctcgttaacaccaatggcagctgg
cacatcaaccgcaccgccctgaactgcaatgactccttgcacaccggctttatcgcgtct
ctgttctacacccacagcttcaactcgtcaggatgtcccgaacgcatgtccgcctgccgc
agtatcgaggccttccgggtgggatggggcgccttgcaatatgaggataatgtcaccaat
ccagaggatatgagaccctattgctggcactacccaccaaggcagtgtggcgtggtctcc
gcgaagactgtgtgtggcccagtgtactgtttcacccccagcccagtggtagtgggcacg
accgacaggcttggagcgcccacttacacgtggggggagaatgagacagatgtcttccta
ttgaacagcactcgaccaccgctggggtcatggttcggctgcacgtggatgaactcttct
ggctacaccaagacttgcggcgcaccaccctgccgtactagagctgacttcaacgccagc
acggacctgttgtgccccacggactgttttaggaagcatcctgataccacttacctcaaa
tgcggctctgggccctggctcacgccaaggtgcctgatcgactacccctacaggctctgg
cattacccctgcacagttaactataccatcttcaaaataaggatgtatgtgggaggggtt
gagcacaggctcacggctgcatgcaatttcactcgtggggatcgttgcaacttggaggac
agagacagaagtcaactgtctcctttgttgcactccaccacggaatgggccattttacct
tgctcttactcggacctgcccgccttgtcgactggtcttctccacctccaccaaaacatc
gtggacgtacaattcatgtatggcctatcacctgccctcacaaaatacatcgtccgatgg
gagtgggtaatactcttattcctgctcttagcggacgccagggtttgcgcctgcttatgg
atgctcatcttgttgggccaggccgaagcagcactagagaagctggtcatcttgcacgct
gcgagcgcagctagctgcaatggcttcctatattttgtcatctttttcgtggctgcttgg
tacatcaagggtcgggtagtccccttagctacctattccctcactggcctgtggtccttt
agcctactgctcctagcattgccccaacaggcttatgcttatgacgcatctgtgcatggc
cagataggagcggctctgctggtaatgatcactctctttactctcacccccgggtataag
acccttctcagccggtttttgtggtggttgtgctatcttctgaccctgggggaagctatg
gtccaggagtgggcaccacctatgcaggtgcgcggtggccgtgatggcatcatatgggcc
gtcgccatattctacccaggtgtggtgtttgacataaccaagtggctcttggcggtgctt
gggcctgcttacctcctaaaaggtgctttgacgcgcgtgccgtacttcgtcagggctcac
gctctactgaggatgtgcaccatggcaaggcatctcgcggggggcaggtacgtccagatg
gcgctactagcccttggcaggtggactggcacttacatctatgaccacctcacccctatg
tcggattgggctgctagtggcctgcgggacctggcggtcgccgttgagcctatcatcttc
agtccgatggagaagaaagtcattgtctggggagcggagacagctgcttgtggggacatt
ttacacggacttcccgtgtccgcccgacttggtcgggaggtcctccttggcccagctgat
ggctatacctccaaggggtggagtcttctcgcccccatcactgcttacgcccagcagaca
cgtggccttttgggcaccatagtggtgagcatgacggggcgcgacaagacagaacaggct
ggggaaattcaggtcctgtccacagtcactcagtccttcctcggaacatccatctcgggg
gttttgtggactgtctaccatggagctggcaacaagactctggccggctcacggggtccg
gtcacgcagatgtactccagtgctgagggggacttagtagggtggcccagcccccctggg
actaaatctttggagccgtgcacgtgtggagcggtcgacctgtacctggtcacgcggaac
gctgatgtcatcccggctcgaagacgcggggacaaacggggagcgctactctccccgaga
cctctttccaccttgaaggggtcctcaggaggcccggtgctatgccccaggggccacgct
gtcggagtcttccgggcagctgtgtgctctcggggcgtggctaagtccatagatttcatc
cccgttgagacactcgacatcgtcacgcggtcccccacctttagtgacaacagcacacca
cctgctgtgccccagacctatcaggtcgggtacttgcatgccccgactggcagtggaaag
agcaccaaagttcctgtcgcatatgctgctcaggggtataaagtgctagtgcttaatccc
tcagtggctgccaccctggggtttggggcgtacttgtctaaggcacatggcatcaatccc
aacattaggactggagtcaggactgtgacgaccggggcgcccatcacgtactccacatat
ggcaaattcctcgccgatgggggctgtgcgggcggcgcctacgacatcatcatatgtgat
gaatgccatgccgtggactctaccaccatccttggcatcggaacagtccttgatcaagca
gagacagctggggtcagactaactgtgctggctacagctacgccccctgggtcagtgaca
accccccaccccaacatagaggaggtggcccttgggcaggagggcgagatccccttctat
gggagggcgattcccctgtcttacatcaagggaggaagacatctgatcttctgccattca
aagaaaaagtgtgacgagctcgcggcggcccttcggggtatgggcttgaactcagtggca
tactacagagggttggacgtctccgtaataccaactcagggagacgtagtggtcgtcgcc
accgacgccctcatgacagggtatactggggactttgactccgtgatcgactgcaacgta
gcggtcactcaagttgtagacttcagtttagaccccacattcaccataaccacacagatt
gtccctcaagacgctgtctcacgtagccagcgccggggtcgcacgggtaggggaagactg
ggcatttataggtatgtttccactggtgagcgagcctcaggaatgtttgacagtgtagtg
ctctgtgagtgctacgacgcaggggccgcatggtatgagctcacaccatcggagaccacc
gtcaggctcagggcgtatttcaacacgcccggtttgcctgtgtgccaagaccatcttgag
ttttgggaggcagttttcaccggcctcacacacatagatgcccacttcctttcccaaaca
aagcaatcgggggaaaatttcgcatacttaacagcctaccaggctacagtgtgcgctagg
gccaaagccccccccccgtcctgggacgtcatgtggaagtgtttgactcgactcaagccc
acactcgtgggccccacacctctcctgtaccgcttgggctctgttaccaacgaggtcacc
ctcacacatcccgtgacgaaatacatcgccacctgcatgcaagccgaccttgaggtcatg
accagcacatgggtcttggcagggggagtcttggcggccgtcgccgcgtattgcctggcg
accgggtgtgtttgcatcatcggccgcttgcacattaaccagcgagccgtcgttgcgccg
gacaaggaggtcctctatgaggcttttgatgagatggaggaatgtgcctctagggcggct
ctcattgaagaggggcagcggatagccgagatgctgaagtccaagatccaaggcttattg
cagcaagcttccaaacaagctcaagacatacaacccactgtgcaggcttcatggcccaag
gtagaacaattctgggccaaacacatgtggaacttcattagcggcatccaatacctcgca
ggactatcaacactgccagggaaccctgcagtagcttccatgatggcgttcagtgccgcc
ctcaccagtccgctgtcaacaagcaccactatccttctcaacattttggggggctggcta
gcatcccaaattgcaccacccgcgggggccactggcttcgttgtcagtggcctagtggga
gctgccgtaggcagtataggcttaggtaaggtgctagtggacatcctggcagggtatggt
gcgggcatttcgggggctctcgtcgcattcaagatcatgtctggcgagaagccctccatg
gaggatgtcgtcaacttgctgcctggaattctgtctccgggtgccttggtagtgggagtc
atctgcgcggccattctgcgccgacacgtgggaccgggggaaggcgccgtccaatggatg
aatagactcattgcctttgcttccagaggaaatcacgtcgcccccacccactacgtgacg
gagtcggatgcgtcgcagcgtgtgacccaactacttggctcccttaccataaccagcctg
ctcagaagactccacaactggattactgaggactgccccatcccatgcggcggctcgtgg
ctccgcgatgtgtgggactgggtttgcaccatcctaacagactttaaaaattggctgacc
tccaaattattcccaaagatgcccggcctcccctttgtctcctgtcaaaaggggtacaag
ggcgtgtgggccggcactggcatcatgaccacacggtgtccttgcggcgccaatatctct
ggcaatgtccgcttgggctccatgagaatcacggggcctaagacctgcatgaatatctgg
caggggacctttcctatcaattgttacacggagggccagtgcgtgccgaaacccgcgcca
aactttaaggtcgccatctggagggtggcggcctcagagtacgcggaggtgacgcagcac
gggtcataccactacataacaggactcaccactgataacttgaaagtcccctgccaacta
ccctctcccgagttcttttcctgggtggacggagtgcagatccataggtttgcccccaca
ccgaagccgtttttccgggatgaggtctcgttctgcgttgggcttaattcatttgtcgtc
gggtcccagcttccttgcgaccctgaacccgacacagacgtattgatgtccatgctaaca
gatccatctcatatcacggcggagactgcagcgcggcgtttagcgcgggggtcaccccca
tccgaggcaagctcctcggcgagccagctatcggcaccatcgctgcgagccacctgcacc
acccacggcaaagcctatgatgtggacatggtggatgctaacctgttcatggggggcgat
gtgactcggatagagtctgggtccaaagtggtcgttctggactctctcgacccaatggtc
gaagaaaggagcgaccttgagccttcgataccatcagaatacatgctccccaagaagagg
ttcccaccagctttaccggcctgggcacggcctgattacaacccaccgcttgtggaatcg
tggaaaaggccagattaccaaccggccactgttgcgggctgtgctctccctcctcctagg
aaaaccccgacgcctcccccaaggaggcgccggacagtgggcctaagtgaggactccata
ggagatgcccttcaacagctggccattaagtcctttggccagccccccccaagcggcgat
tcaggcctttccacgggggcgggcgctgccgattccggcagtcagacgcctcctgatgag
ttggccctttcggagacaggttccatctcttccatgccccccctcgagggggagcttgga
gatccagacctggagcctgagcaggtagagccccaaccccccccccaggggggggtggca
gctcccggctcggactcggggtcctggtctacttgctccgaggaggacgactccgtcgtg
tgctgctccatgtcatactcctggaccggggctctaataactccttgtagtcccgaagag
gagaagttaccgattaaccccttgagcaactccctgttgcgatatcacaacaaggtgtac
tgtaccacaacaaagagcgcctcactaagggctaaaaaggtaacttttgataggatgcaa
gtgctcgactcctactacgactcagtcttaaaggacattaagctagcggcctccaaggtc
accgcaaggctcctcaccatggaggaggcttgccagttaaccccaccccattctgcaaga
tctaaatatgggtttggggctaaggaggtccgcagcttgtccgggagggccgttaaccac
atcaagtccgtgtggaaggacctcctggaggactcagaaacaccaattcccacaaccatt
atggccaaaaatgaggtgttctgcgtggaccccaccaaggggggcaagaaagcagctcgc
cttatcgtttaccctgacctcggcgtcagggtctgcgagaagatggccctttatgacatt
acacaaaaacttcctcaggcggtgatgggggcttcttatggattccagtattcccccgct
cagcgggtagagtttctcttgaaagcatgggcggaaaagaaggaccctatgggtttttcg
tatgatacccgatgctttgactcaaccgtcactgagagagacatcaggactgaggagtcc
atatatcgggcctgctccttgcccgaggaggcccacactgccatacactcgctaactgag
agactttacgtgggagggcctatgttcaacagcaagggccaaacctgcgggtacaggcgt
tgccgcgccagcggggtgctcaccactagcatggggaacaccatcacatgctacgtgaaa
gccttagcggcttgtaaagctgcagggataatcgcgcccacaatgctggtatgcggcgat
gacttggttgtcatctcagaaagccaggggaccgaggaggacgagcggaacctgagagcc
ttcacggaggctatgaccaggtattctgcccctcctggtgacccccccagaccggagtat
gatctggagctgataacatcttgctcctcaaatgtgtctgtggcgctgggcccacaaggc
cgccgcagatactacctgaccagagaccctaccactccaatcgcccgggctgcctgggaa
acagttagacactcccctgtcaattcatggctgggaaacatcatccagtacgccccgacc
atatgggctcgcatggtcctgatgacacacttcttctccattctcatggctcaagacacg
ctggaccagaacctcaactttgagatgtacggagcggtgtactccgtgagtcccttggac
ctcccagctataattgaaaggttacatgggcttgacgctttttctctgcacacatacact
ccccacgaactgacacgggtggcttcagccctcagaaaacttggggcgccacccctcaga
gcgtggaagagccgggcacgtgcagtcagggcgtccctcatctcccgtggggggagagcg
gccgtttgcggtcgatatctcttcaattgggcggtgaagaccaagctcaaactcactcca
ttgccggaagcgcgcctcctggatttatccagctggttcaccgtcggcgccggcgggggc
gacatttatcacagcgtgtcgcgtgcccgaccccgcttattgctctttggcctactccta
ctttttgtaggggtaggccttttcctactccccgctcggtag
DBGET
integrated database retrieval system
