Viruses: 11027185
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Entry
11027185 CDS
T40000
Symbol
POLY, HCV3_gp1
Name
(RefSeq) Hepatitis C virus genotype 3; polyprotein
KO
K19358
Hepatitis C virus polyprotein
Virus
356114
Hepatitis C virus genotype 3
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
HCV_NS1
RdRP_3
HCV_env
HCV_NS5a_C
NS3_helicase_C
HCV_NS2
HCV_NS4b
Peptidase_S29
HCV_capsid
HCV_core
HCV_NS5a_1b
HCV_NS5a_1a
HCV_NS4a
HCV_NS5a
Flavi_DEAD
RdRP_1
ResIII
Motif
Other DBs
NCBI-GeneID:
11027185
NCBI-ProteinID:
YP_001469631
RS:
NC_009824
UniProt:
Q81258
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_009824:340..9405
Genome browser
AA seq
3021 aa
AA seq
DB search
MSTLPKPQRKTKRNTIRRPQDVKFPGGGQIVGGVYVLPRRGPRLGVRATRKTSERSQPRG
RRQPIPKARRSEGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRRRSRNLG
KVIDTLTCGFADLMGYIPLVGAPVGGVARALAHGVRALEDGINFATGNLPGCSFSIFLLA
LFSCLIHPAASLEWRNTSGLYVLTNDCSNSSIVYEADDVILHTPGCVPCVQDGNTSTCWT
PVTPTVAVRYVGATTASIRSHVDLLVGAATMCSALYVGDMCGAVFLVGQAFTFRPRRHQT
VQTCNCSLYPGHLSGHRMAWDMMMNWSPAVGMVVAHVLRLPQTLFDIMAGAHWGILAGLA
YYSMQGNWAKVAIIMVMFSGVDAHTYTTGGTASRHTQAFAGLFDIGPQQKLQLVNTNGSW
HINSTALNCNESINTGFIAGLFYYHKFNSTGCPQRLSSCKPITFFRQGWGPLTDANITGP
SDDRPYCWHYAPRPCDIVPASSVCGPVYCFTPSPVVVGTTDARGVPTYTWGENEKDVFLL
KSQRPPSGRWFGCSWMNSTGFLKTCGAPPCNIYGGEGNPHNESDLFCPTDCFRKHPETTY
SRCGAGPWLTPRCMVDYPYRLWHYPCTVDFRLFKVRMFVGGFEHRFTAACNWTRGERCDI
EDRDRSEQHPLLHSTTELAILPCSFTPMPALSTGLIHLHQNIVDVQYLYGVGSGMVGWAL
KWEFVILVFLLLADARVCVALWLMLMISQTEAALENLVTLNAVAAAGTHGIGWYLVAFCA
AWYVRGKLVPLVTYSLTGLWSLALLVLLLPQRAYAWSGEDSATLGAGVLVLFGFFTLSPW
YKHWIGRLMWWNQYTICRCESALHVWVPPLLARGSRDGVILLTSLLYPSLIFDITKLLMA
VLGPLYLIQATITTTPYFVRAHVLVRLCMLVRSVIGGKYFQMIILSIGRWFNTYLYDHLA
PMQHWAAAGLKDLAVATEPVIFSPMEIKVITWGADTAACGDILCGLPVSARLGREVLLGP
ADDYREMGWRLLAPITAYAQQTRGLLGTIVTSLTGRDKNVVTGEVQVLSTATQTFLGTTV
GGVIWTVYHGAGSRTLAGAKHPALQMYTNVDQDLVGWPAPPGAKSLEPCACGSSDLYLVT
RDADVIPARRRGDSTASLLSPRPLACLKGSSGGPVMCPSGHVAGIFRAAVCTRGVAKSLQ
FIPVETLSTQARSPSFSDNSTPPAVPQSYQVGYLHAPTGSGKSTKVPAAYVAQGYNVLVL
NPSVAATLGFGSFMSRAYGIDPNIRTGNRTVTTGAKLTYSTYGKFLADGGCSGGAYDVII
CDECHAQDATSILGIGTVLDQAETAGVRLTVLATATPPGSITVPHSNIEEVALGSEGEIP
FYGKAIPIALLKGGRHLIFCHSKKKCDEIASKLRGMGLNAVAYYRGLDVSVIPTTGDVVV
CATDALMTGFTGDFDSVIDCNVAVEQYVDFSLDPTFSIETRTAPQDAVSRSQRRGRTGRG
RLGTYRYVASGERPSGMFDSVVLCECYDAGCSWYDLQPAETTVRLRAYLSTPGLPVCQDH
LDFWESVFTGLTHIDAHFLSQTKQQGLNFSYLTAYQATVCARAQAPPPSWDEMWKCLVRL
KPTLHGPTPLLYRLGPVQNETCLTHPITKYLMACMSADLEVTTSTWVLLGGVLAALAAYC
LSVGCVVIVGHIELEGKPALVPDKEVLYQQYDEMEECSQAAPYIEQAQVIAHQFKEKILG
LLQRATQQQAVIEPIVTTNWQKLEAFWHKHMWNFVSGIQYLAGLSTLPGNPAVASLMAFT
ASVTSPLTTNQTMFFNILGGWVATHLAGPQSSSAFVVSGLAGAAIGGIGLGRVLLDILAG
YGAGVSGALVAFKIMGGECPTAEDMVNLLPAILSPGALVVGVICAAILRRHVGPGEGAVQ
WMNRLIAFASRGNHVSPTHYVPESDAAARVTALLSSLTVTSLLRRLHQWINEDYPSPCSD
DWLRTIWDWVCSVLADFKAWLSAKIMPALPGLPFISCQKGYKGVWRGDGVMSTRCPCGAA
ITGHVKNGSMRLAGPRTCANMWHGTFPINEYTTGPSTPCPSPNYTRALWRVAANSYVEVR
RVGDFHYITGATEDELKCPCQVPAAEFFTEVDGVRLHRYAPPCKPLLRDDITFMVGLHSY
TIGSQLPCEPEPDVSVLTSMLRDPSHITAETAARRLARGSPPSEASSSASQLSAPSLKAT
CQTHRPHPDAELVDANLLWRQEMGSNITRVESETKVVVLDSFEPLRAETDDVEPSVAAEC
FKKPPKYPPALPIWARPDYNPPLLDRWKAPDYVPPTVHGCALPPRGAPPVPPPRRKRTIQ
LDGSNVSAALAALAEKSFPSSKPQEENSSSSGVDTQSSTTSKVPPSPGGESDSESCSSMP
PLEGEPGDPDLSCDSWSTVSDSEEQSVVCCSMSYSWTGALITPCSAEEEKLPISPLSNSL
LRHHNLVYSTSSRSASQRQKKVTFDRLQVLDDHYKTALKEVKERASRVKARMLTIEEACA
LVPPHSARSKFGYSAKDVRSLSSRAINQIRSVWEDLLEDTTTPIPTTIMAKNEVFCVDPA
KGGRKPARLIVYPDLGVRVCEKRALYDVIQKLSIETMGPAYGFQYSPQQRVERLLKMWTS
KKTPLGFSYDTRCFDSTVTEQDIRVEEEIYQCCNLEPEARKVISSLTERLYCGGPMFNSK
GAQCGYRRCRASGVLPTSFGNTITCYIKATAAAKAANLRNPDFLVCGDDLVVVAESDGVD
EDRAALRAFTEAMTRYSAPPGDAPQATYDLELITSCSSNVSVARDDKGRRYYYLTRDATT
PLARAAWETARHTPVNSWLGNIIMYAPTIWVRMVMMTHFFSILQSQEILDRPLDFEMYGA
TYSVTPLDLPAIIERLHGLSAFTLHSYSPVELNRVAGTLRKLGCPPLRAWRHRARAVRAK
LIAQGGKAKICGLYLFNWAVRTKTNLTPLPAAGQLDLSSWFTVGVGGNDIYHSVSRARTR
HLLLCLLLLTVGVGIFLLPAR
NT seq
9066 nt
NT seq
+upstream
nt +downstream
nt
atgagcacacttcctaaacctcaaagaaaaaccaaaagaaacaccatccgtcgcccacag
gacgtcaagttcccgggtggcggacagatcgttggtggagtatacgtgttgccgcgcagg
ggcccacgattgggtgtgcgcgcgacgcgtaaaacttctgaacggtcacagcctcgcgga
cgacgacagcctatccccaaggcgcgtcggagcgaaggccggtcctgggctcagcccggg
tacccttggcccctctatggtaacgagggctgcgggtgggcagggtggctcctgtcccca
cgcggctcccgtccatcctggggcccaaatgacccccggcggaggtcccgcaatttgggt
aaagtcatcgataccctaacgtgcggattcgccgacctcatggggtacatcccgctcgtc
ggcgctcctgtaggaggcgtcgcaagagccctcgcgcatggcgtgagggcccttgaagac
gggataaatttcgcaacagggaacttgcccggttgctccttttctatcttccttcttgct
ctgttctcttgcttaattcatccagcagccagtctagagtggcggaatacgtctggcctc
tacgtccttaccaacgactgttccaatagcagtattgtgtatgaggccgatgatgtcatt
ctgcacacacccggctgtgtaccttgtgtccaggacggcaatacatctacgtgctggacc
ccagtgacacctacagtggcagtcaggtacgtcggagcaactactgcttcgatacgcagt
catgtggacctattagtaggcgcggccacgatgtgctctgcgctctacgtgggtgatatg
tgtggggctgtctttctcgtgggacaagccttcacgttcagacctcgacgccatcaaacg
gtccagacctgtaactgctcgctgtacccaggccatctttcaggacatcgaatggcttgg
gatatgatgatgaattggtcccccgctgtgggtatggtggtggcgcatgtcctgcgttta
ccccagaccttgttcgacataatggccggggcccattggggcatcttggcgggcctggcc
tattactccatgcagggcaactgggccaaggtcgcaatcatcatggttatgttctcaggg
gtcgatgcccacacatataccaccggtggcactgcatctcgtcatacccaagcgtttgct
ggtctttttgacataggcccccaacagaaactgcagctggtcaacaccaatggctcgtgg
cacatcaacagtactgccctaaattgcaatgagtccataaacaccgggtttatagctggg
ttgttttattaccataagttcaactctactggatgtcctcaaaggctcagcagctgcaag
cccatcactttcttcaggcagggatggggccccttaacagatgctaacatcaccggtcct
tctgatgacagaccatactgctggcactacgcacctagaccttgtgacattgtcccggca
tcaagtgtctgcggccctgtgtactgcttcacaccatcgccagtggtcgtaggcactact
gatgccaggggcgtgccaacctacacctggggtgagaatgagaaagatgtgttcctgctg
aagtcccagcggcctcccagtggtcggtggtttgggtgctcgtggatgaactccacgggg
tttctcaagacgtgcggagctcccccctgtaacatctatgggggcgaggggaatccccac
aatgaatcagatcttttctgccccactgactgcttcaggaaacatcccgagaccacgtac
agccggtgtggtgcagggccctggttgacacctcgttgcatggttgactacccataccgg
ctttggcattacccatgtacagtcgatttcagattgttcaaggtgaggatgtttgtgggt
gggtttgaacatcgatttaccgccgcttgcaactggaccaggggggagcgctgcgatatc
gaggatcgtgaccgcagtgagcaacatccgctgctgcattcaacaactgagcttgctata
ctgccttgctctttcacgcccatgcctgcgctgtcaacaggtctgatacacctccaccaa
aacatcgtggatgtccaatacctttatggcgttggatctggcatggtgggatgggcgctg
aaatgggagttcgtcatcctcgttttcctccttctggcggacgcacgcgtgtgcgttgcc
ctttggctgatgctgatgatatcacagacagaagcagccttggagaacctggtcacgctg
aacgccgtcgctgctgctgggacacatggtatcggctggtacctggtagctttttgcgcg
gcgtggtacgtgcggggtaaactcgtcccgctggtgacctacagcctgacgggtctttgg
tccctagcattgctcgtcctcttgctcccccaacgtgcgtatgcttggtcgggtgaagac
agcgccactcttggcgctggggtcttggtcctcttcggcttctttaccttgtcaccctgg
tataagcattggatcggccgcctcatgtggtggaaccagtacaccatatgcagatgcgag
tccgcccttcacgtgtgggttccccccttactcgcacgcgggagtagggatggtgtcatc
ctgctaacaagcctgctttatccatccttaatttttgacatcactaagctgctgatggca
gtattgggcccattatacttaatacaggctaccattactaccaccccctactttgtgcgt
gcgcatgtactggtccgcctttgcatgctcgtgcgctccgtgataggggggaaatacttc
cagatgatcatactgagcattggcagatggttcaacacctacctatacgaccacctagcg
ccaatgcaacactgggccgctgctggtctcaaagacctagcagtggccactgaacctgta
atatttagtcccatggaaatcaaggtcatcacctggggtgcggatacagcggcttgcgga
gatattctttgcgggctgcccgtctctgcacgattaggccgtgaggtgttgttgggacct
gctgatgactatcgggagatgggctggcgtctgttggccccgattacagcatacgcccag
caaactaggggccttcttgggactattgtgactagcttgactggcagagacaagaacgtg
gtgaccggtgaagtgcaggtgctttctacggctacccagaccttcctaggtacaacagta
gggggggttatatggactgtttatcatggagcaggttcgagaacgctcgcgggcgccaaa
catcccgcgctccaaatgtacacaaatgtagatcaggacctcgttgggtggccagcccct
ccaggggccaagtctcttgaaccgtgcgcctgcgggtcttcagacttatacttggttacc
cgcgatgccgatgtcatccctgctcggcgcagaggggactccacagcgagcttgctcagt
cctaggcctctcgcctgtctcaagggttcctctggaggtcccgttatgtgcccttcgggg
catgttgcggggatctttagggctgctgtgtgcaccagaggtgtagcaaaatccctacag
ttcataccagtggaaacccttagcacgcaggctaggtctccatctttctctgacaattca
actcctcctgctgttccacagagctatcaagtaggatacctccatgccccgaccggcagc
ggtaagagcacaaaggtcccggccgcttatgtagcacaaggatataatgtcctcgtacta
aatccatcggtggcggccacattaggcttcggctccttcatgtcgcgtgcctatgggatc
gaccccaacatccgcactgggaaccgcaccgttacaactggtgctaaactgacctattcc
acctacggtaagtttctcgcggacgggggttgctccgggggggcatatgatgtgattatc
tgtgatgaatgtcatgcccaagacgctactagcatattgggtataggcacggtcttagat
caggctgagacggctggggtgaggctgacggttttagcgacagcaactcccccaggcagc
atcactgtgccgcattctaacatcgaagaagtggccctgggctctgaaggtgagatccct
ttctacggtaaggctataccgatagccctgctcaagggggggaggcaccttatcttttgc
cattccaagaaaaaatgtgatgagatagcgtccaaactaagaggcatggggctcaacgct
gtagcatactataggggtctcgatgtgtccgtcataccaacaacaggagacgtcgtagtt
tgcgctactgacgccctcatgactggattcaccggggacttcgattctgtcatagattgc
aacgtggctgttgaacagtacgttgacttcagcctggaccccaccttttccattgagacc
cgcactgctccccaagatgcggtttcccgcagccaacgtcgcggccgaacgggtcgaggt
agactcggtacgtaccgatatgtcgcctccggtgaaagaccgtctggaatgtttgactcg
gtcgtcctctgtgagtgctatgacgcgggctgctcatggtacgatctgcagcccgctgag
accacagttagactgagagcttacttgtccacacccgggttacccgtctgccaagaccat
ttagacttttgggagagcgtcttcactggactaactcacatagatgcccactttctgtca
cagactaagcagcagggacttaacttctcgtacctaactgcctaccaagccactgtgtgc
gcccgcgcgcaggctcctcccccaagttgggacgagatgtggaagtgtctcgtgcggctt
aagccaacactacatggacctacgccccttctatatcggctggggcctgtccaaaatgaa
acctgcttgacacaccccatcacaaaatacctcatggcatgcatgtcagccgatctggaa
gtaaccaccagcacctgggtgttgctcggaggggtcctcgcagccctagcggcctactgc
ttgtcagtcggctgcgttgtgattgtgggtcatattgagctggagggcaagccagcactc
gttccagacaaagaggtgttgtatcaacaatacgatgagatggaggagtgctcacaagct
gccccatatatcgaacaagctcaggtaatagcccaccagttcaaggaaaaaatccttgga
ttgctgcagcgagccacccagcaacaagctgtcattgagcccatagtaactaccaactgg
caaaagcttgaggccttctggcacaagcatatgtggaattttgtgagtgggatccaatac
ctagcaggcctctccactttgcctggcaaccctgctgtggcgtctcttatggcgttcact
gcttcagtcaccagtcccctgacgaccaaccaaactatgttttttaacatactcgggggg
tgggttgccacccatttggcagggccccagagctcctccgcgttcgtggtaagcggcttg
gcaggcgctgccatagggggtataggcctgggcagggtcttgcttgacatcctggcagga
tacggagctggtgtctcaggcgccttggtagcttttaagatcatgggaggagaatgcccc
actgctgaggacatggtcaacctgttgcccgccatactatctccgggtgctctcgtcgtc
ggtgtgatatgcgcagccatactgcgccgacacgtaggacctggggagggagcggtacag
tggatgaacaggctcatcgcgttcgcatcccggggcaaccacgtctcaccgacgcactat
gttcccgagagcgatgctgcggcaagggtcaccgcattgctgagttctctaactgtcaca
agtctgctccggcggttacaccagtggatcaatgaagactacccaagcccttgtagcgac
gattggctacgtaccatctgggactgggtttgctcggtgttggccgacttcaaggcatgg
ctctctgctaagattatgccagcgctccctgggctgcccttcatttcctgtcaaaaggga
tacaagggcgtgtggcggggggacggtgtgatgtcaacacgctgtccttgcggggcagca
ataactggccatgtgaagaacgggtccatgcggcttgcagggccgcgtacatgtgctaac
atgtggcacggtactttccccatcaatgagtacaccaccggacccagcacaccttgccca
tcacccaactacactcgcgcactatggcgcgtggctgccaacagctacgttgaggtgcgt
cgggtgggggacttccattacatcacgggggccacagaagatgagctcaagtgtccgtgc
caagtgccggctgctgagttctttactgaagtggatggagtgagacttcaccgctacgcc
cctccatgtaagcccctgttgagagatgatatcactttcatggtagggttgcattcctac
acgataggatctcaactcccctgtgagccagaaccggatgtctctgtgctgacctcgatg
ttgagagacccttcccatatcaccgccgagacggcagcgcgccgccttgcacgcgggtcc
cctccatcagaggcaagctcatccgccagccaactatcagctccgtcgttgaaggccact
tgccagacgcataggcctcatccagacgctgagctagtggacgccaacttgttatggcgg
caagagatgggcagcaacattacacgggtggagtctgagacaaaggttgtggttcttgat
tcgttcgagcctctgagagccgaaactgatgacgtcgagccctcggtggctgcagagtgt
ttcaagaaacctcccaagtatcctccagcccttcctatctgggctagaccggactacaat
cctccactgttggaccgctggaaagcaccggattatgtaccaccaactgtccatggatgt
gccttaccaccacggggcgctccaccggtgcctccccctcggaggaaaaggacaattcag
ctggacggctctaatgtgtccgcggcgctagccgcgctagctgaaaaatcattcccgtcc
tcgaaaccacaggaagagaatagctcatcctccggggtcgacacacagtccagcactact
tccaaggtgcccccttctccgggaggggagtccgactcagagtcatgctcgtctatgcct
cctctcgagggagagccgggcgacccggacttgagttgcgactcttggtccaccgttagt
gacagcgaggagcagagcgtggtctgctgctctatgtcgtattcttggaccggcgccctg
ataacaccatgtagtgctgaggaagagaaactgcccatcagcccactcagcaactccctg
ttgagacatcataacctagtctattcaacgtcgtctagaagcgcttctcagcgtcagaag
aaggttaccttcgatagactgcaggtgctcgacgaccattacaagactgcattaaaggag
gtaaaggagcgagcgtctagggtaaaggctcgcatgctcaccatcgaggaagcgtgcgcg
ctcgtccctcctcactctgcccgatcgaagttcgggtatagtgcgaaggacgttcgctcc
ttgtccagcagggccattaaccagatccgctccgtctgggaggacttgctggaagacacc
acaactccaattccaaccaccatcatggcgaagaacgaggtgttttgcgtggaccccgct
aaagggggccgcaagcccgctcgcctcattgtgtaccctgacctgggggtgcgtgtctgt
gagaaacgcgccctgtatgacgtgatacagaagttgtcaattgagacgatgggtcctgcc
tatggattccaatactcgcctcaacagcgggtcgaacgtctgctgaagatgtggacctca
aagaaaacccccttggggttctcatatgacacccgctgctttgactcaactgtcactgaa
caggacatcagggtggaagaggagatataccaatgctgtaaccttgaaccggaggccagg
aaagtgatctcctccctcacggagcggctttactgcggaggccctatgttcaacagcaag
ggggcccagtgtggttatcgccgttgccgtgccagtggagttctgcctaccagcttcggc
aacacaatcacttgttacatcaaggccacagcggctgcaaaggccgcaaacctccggaac
ccggactttcttgtctgcggagatgatttggtcgtggtggctgagagtgatggcgtcgat
gaggatagagcagccctgagagccttcacggaggctatgaccaggtattctgctccaccc
ggagatgctccacaggccacttacgaccttgagcttatcacatcttgctcctccaacgtc
tccgtggcacgggacgacaaggggaggaggtactattacctcacccgtgatgccactact
cccctagcccgtgcggcttgggaaacagctcgtcacactccagttaactcctggttaggc
aacatcatcatgtacgcgcctaccatctgggtgcgcatggtgatgatgacacactttttc
tccatactccaatcccaggagatacttgatcgcccccttgactttgaaatgtacggggcc
acttattctgtcactccgctggatttaccagcaatcattgaaagactccatggtctaagc
gcgttcacgctccacagttactctccagtagagctcaatagggtcgcggggacactcagg
aagcttgggtgcccccccctacgggcttggagacatcgggcacgagcagtgcgcgccaag
cttatcgcccagggaggaaaggctaaaatatgcggcctttatctctttaattgggcggta
cgcaccaagaccaacctcactccattgccagccgctggccagttggatttgtccagctgg
tttacggttggtgtcggcgggaacgacatttatcacagcgtgtcgcgtgcccgaacccgc
catttgctgctttgcctactcctactaacagtaggggtaggcatctttctcttgccagct
cgatga
DBGET
integrated database retrieval system
