Viruses: 13280752
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Entry
13280752 CDS
T40000
Symbol
RdRp, B390_gp1
Name
(RefSeq) Potato virus H; RNA-dependent RNA polymerase
KO
K26628
Betaflexiviridae RNA replication polyprotein
Virus
1046402
Potato virus H
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
RdRP_2
Viral_helicase1
Peptidase_C23
AAA_30
AAA_19
AAA_14
UvrD_C_2
AAA_22
ABC_tran
Motif
Other DBs
NCBI-GeneID:
13280752
NCBI-ProteinID:
YP_006522434
RS:
NC_018175
UniProt:
I6YB60
LinkDB
All DBs
Position
NC_018175:71..5920
Genome browser
AA seq
1949 aa
AA seq
DB search
MALTYRSPLEDIVAAFDPAVQSSISNTAAQSYKEYEQSNFELFNYALSAKAKERLSTSGV
YLSPYSAVPHSHPVCKTLENYFLYKVLPSYLDSRFYFVGIKNFKLELLKKRSKNLDLVSS
INRFVSSADKLRYTSDFVRLQSSKSASLVSKRVVLEDVTLRDLLPAAMARSAKYLFLHDE
LHYWSKRTLMNFLSELQPEVVLATVVIPPETLAGAKESLNRWCYEYEVSGSKLYFYPDGV
RAEGYEQPLGASYLLKCGKLLLDDGQVYCVDVVCSKFAHHLLCISKGDAVVPTRRSYGPF
DATSARGLSNLTASLKKYIPVNFEVMSKVYRYLRTLKKPDAQSAMAKLSQILPSPTSAEI
KFVSEFADLVIETKGIHSMICPARLTLWLGKVGNVLPPCLRERIATVKEVSLDEFVASFE
PYTLNVEVVDVSTSSVEYIVELFTAEVPVTETDLLKAMSRFNSGESVVLDRTPQRYTGMA
PLSGKVEFSLELNYDALPRFCADNFIKSYSRFDEPKPAIESIKVVIQHFSRVSLAFPMRK
VGVLFGQAKFWRRVMLSVHAKLARYSRASYPKDGVGWFQARRRANQRYLCGTGDHPSVVH
AVRSAWTMVVQEVTAKGDADLPWIEHASEAAGCHITGSNSKAQPDEVSVCGEHALCVKMK
VVCTAHSGLNGFDIGAASRSGLSYIAFGRHTASKDALKSCGFYVESEWPAWLDQWLEVVV
LDAAYNVCVVRMNQVTGGGAQMCFENLGKLSTENTALVCLSGKASLANCRDNCDRAMEVT
EGGTLRLEGEARTLGEVGVKCANAMYVDVVMLRLVETTASVELVEAPTEVRSDRGEPALC
YDSLGAQVTIVSEASMPKGVLRDVPGDGDCYWHCLAEVLDMSAKVIKKLCCERLLSVAPK
LSEEVMRQVEDGESACDELIAISAALFGLCVIIHNEQRGDERTFKGHSATIQIKLLLKGE
HFQLILPRNNCVLRAIGQALKRSEVEVLKVVNVKCTEALVGKIWEGEGVGLDELDLVFSC
FDIRAIVHRGNEQFVLNEQGKVVKSFSATDDHLEYLERKRTPSAELLMGHKKCREVDQRA
VNELAMAGTSLVYEISATRARVLAECLLEGLTGAFSSELFDGKRSLMPTGTDVEAPRCAR
VHVIMGTFGAGKSTLFKKFMSKCSGRKVTYVSPRKVLADSFKSMMGLGRTKGESALVGAE
NWSVRTFEAFLHTAFTVEKGEALLFDEIQLYPPGYLDLVCCIVPPTAHLFLIGDPCQSEY
DNEQDRAVFSDSQTDIMRLLDRSEYRYTVGSYRFLNPKFANRLPCSFLNFNEEDEEDLYV
LREGVERLAEVEEKYKEVFLVSSFEEKKLVKCYSSMDANVLTFGESTGSTFNYATLLITR
ASAAASERRWLTALSRARRGLYIINATGLGMEGLIMSYSQRSLGGFLTGRSKKEDLLKLL
PGKPIFQEVFYPSLCKDEGIMEEKLQGDPWLKTMIDLLQMPDVEEAEELAEVMQEEWFKT
HLPQCELESVRARWVHKILAKEAREKRMGMLISEQFTDEHSKNKGMQLTNACERFETIYP
RHRANDTVTFIMAVKKRLRFSSPAKEKAKLHEASNYGRYLMEIFLKKVPLRREHNTELMA
QAKHEFELKKTSKSAATIENHSGRSCRDWLVDIGQIFSKSQICTKFDNRFRDAKAAQTIV
CFQHAVLCRFAPYMRYIEKKLHEVLPKKYYIHSGKGLDELNNWVIEGQFEGCCTESDYEA
FDASQDQYIMAFEIEIMKYLGLPRDLIADYQYIKTHLGSKLGNFAIMRFSGEASTFLFNT
MANMLFTFMRYEIKGNEYICFAGDDMCSSKRLQVSRVHEAFLGKLKLKAKVQHTSKPTFC
GWNLCADGIYKKPQLVLERMCIAKETDNLRNCIDNYAIEVAFAYKLGERAVNRMDEEELE
AFYNCVRIIVKNKHHCRSNVVEVFSSANV
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atggctctcacatacagaagtccattagaggatatagttgcagcctttgacccggctgtg
cagtcaagtatttcaaataccgcagctcagagctacaaggagtatgagcaaagtaatttc
gagttgtttaattacgctttgtcagctaaggctaaggagcgtttaagcacctcaggcgtt
tacctcagtccttactctgctgtgccgcactcgcaccccgtgtgtaagacattagagaat
tatttcctgtataaagttctaccatcctatttagacagtagattttattttgtaggcatt
aaaaatttcaagttagagttgcttaagaagaggagcaagaatctagacttagttagtagc
ataaatagatttgtttctagtgctgacaaattgaggtacacctctgatttcgtcagactt
cagagcagcaaaagcgcgtccctggttagtaagcgcgttgtgctagaagatgtcactctg
agagatctgctccctgcagcgatggctcgcagcgcgaaatacctctttttgcatgatgaa
ctgcactattggagcaagcgcacgctcatgaactttctgagtgagttgcaacctgaggtg
gtgcttgctaccgttgttatacctcccgagacgctcgcaggcgcaaaagagagcttgaac
cggtggtgttacgagtatgaggtgagcggtagcaagctatatttttatcctgatggtgta
agggccgaggggtatgagcagcccctcggcgcatcatatttgctcaagtgcggcaaactg
ctgcttgatgatgggcaggtgtactgtgttgatgtggtatgcagtaagtttgcgcaccat
ctactttgcataagcaaaggggatgcggttgtgcccaccaggaggtcgtatgggccgttt
gatgcaacatccgcacgcggactctcaaatttgaccgcgagcttgaaaaagtacatccct
gtgaattttgaggtgatgtctaaggtgtacaggtatttgcggacgttgaagaagccggat
gcacagtcagcgatggccaagctgagtcagatattaccgagccccacgagcgctgaaatc
aagttcgtgagtgagtttgcggacctcgtcatagagacgaaaggcatacatagcatgatt
tgccccgctcgcctaacgctgtggcttggaaaggttgggaatgtgttaccaccctgcttg
cgtgagagaatcgcgacggtcaaggaggtttccctagatgagtttgtagcaagttttgag
ccttacacgctgaatgttgaggtggttgatgtgtccacctccagtgtggagtacatagtg
gagctcttcacggccgaggtacccgtaactgaaacagatctcctgaaggccatgtccaga
tttaacagtggggagagcgtggtccttgataggacgccgcagcggtacacaggtatggcc
ccattgagcgggaaggtcgagttctcattggagctcaactatgatgcattgccgcgattc
tgcgctgacaacttcatcaagtcatactcgaggttcgacgagccgaagcccgcgatcgaa
agcatcaaagtggtgattcagcatttttccagggtgagtttagccttcccgatgagaaag
gtgggggtgctttttggccaagcaaagttctggcgtcgtgtgatgttgagcgtgcatgcg
aaattagcccgttacagtcgcgccagttacccgaaagatggtgtggggtggttccaagct
aggaggagagcaaatcaaagatacctatgcggtactggggatcatccgagtgtcgtacat
gctgtacgctccgcctggaccatggtggtgcaagaggtgactgcgaaaggggatgcagac
ctgccatggatagaacacgcaagtgaggctgctgggtgccacattacgggaagtaactca
aaggcacagccagatgaagtgagtgtttgtggagaacatgcgctctgcgtgaaaatgaag
gtggtctgcacggcccactcagggttgaatgggtttgacattggagcagcgagtcgaagc
gggttgagctatatagcttttggtcgccacactgcatcgaaagacgcattgaaatcttgc
ggcttctatgtggaatcagaatggcctgcgtggctcgatcagtggctggaggtggttgtg
ctggatgctgcgtacaatgtgtgcgtcgtgagaatgaaccaggtcactggaggtggagcg
caaatgtgtttcgagaacttgggcaagttgagcacagaaaataccgccttggtgtgcctg
agtggcaaagcaagcctagccaattgcagggataactgcgatcgcgcaatggaggttact
gaaggcggaactttgcgcttggaaggggaggcccggactcttggcgaagtgggtgtgaaa
tgcgccaatgcaatgtatgttgatgtggtcatgttacggcttgtggaaactacggcatct
gtagagttggtagaggcacccacggaagtgaggagtgaccgtggagaacccgcattgtgt
tacgacagtttgggtgctcaggtgaccattgtgagtgaagcgtccatgccgaagggggtg
ttgcgtgatgtgccgggggatggcgattgctattggcactgcctcgctgaggtgttggac
atgagcgctaaggtgattaagaagttgtgctgtgagcgtctgctgagtgtggccccaaag
ctctccgaggaggttatgcgacaggtcgaggatggagagagcgcatgcgacgagctaatt
gcaatttctgctgctctttttggactttgcgtaatcatccacaatgaacaaaggggggat
gagcgtaccttcaaggggcacagcgccacaattcaaatcaagcttctcctcaagggggag
catttccaactgatcctgccaaggaacaactgcgttttgagagcgatagggcaggctctg
aagcgatcggaggttgaggtgctgaaggtggtcaatgtaaagtgcactgaggcacttgtg
ggaaagatctgggaaggtgagggcgttggccttgacgagctagatctcgtctttagctgc
ttcgacatccgtgcgatcgtgcaccgaggtaatgagcagtttgttttgaatgagcagggg
aaagtggtcaaatcgttctcagcgacggatgatcacctcgagtacctagagaggaagagg
acaccaagcgccgaattgctgatggggcacaagaagtgtagggaggtagatcagagagct
gtgaatgaactagcgatggcagggacctctctggtctacgaaattagcgctacgcgcgcg
agagtactcgcggagtgtttgcttgagggactgactggggctttcagctcagaacttttt
gatggaaaaagaagtctaatgcctactggtactgatgtggaggcccctcgttgtgcgcga
gtgcatgttattatgggcaccttcggagctggaaagagtaccctcttcaagaaattcatg
agcaaatgctcgggcagaaaggtcacgtatgtgtcgccacgcaaggtgctggcggattcc
ttcaaaagcatgatgggcctggggaggaccaagggcgaaagtgcgttggtgggcgctgaa
aactggtccgttcggacattcgaggcgttcttacacacagcttttacagttgagaaaggt
gaagcactcctttttgatgagatccaactctatccacctggctatctcgacctagtctgt
tgcatagtgccacccacagcacacttatttttgattggcgacccgtgtcagagcgagtat
gacaatgagcaggacagagctgtcttcagtgacagccagactgacatcatgagacttttg
gatcgctcagagtataggtacacagtgggtagctacagattcctcaacccaaaatttgcg
aataggctaccatgtagttttctgaacttcaatgaagaggatgaagaggatctgtatgtt
ctaagagagggggttgagcgactggccgaggtggaggagaagtacaaagaggtattcctc
gtttcctcctttgaagagaagaagcttgtcaagtgctatagctccatggatgccaatgta
ctcacattcggcgaatcaacggggtctaccttcaattatgctacattgctcatcacacgg
gcttccgccgctgctagtgagaggcgttggctaactgcgctaagtcgtgcaaggcggggt
ctctacatcatcaatgctacgggtctggggatggagggtctgattatgagttattcccaa
cgtagcttggggggttttcttacagggagatcaaagaaggaggatctcttaaagctgctt
cctggaaagccaatatttcaagaggtgttctacccctccctctgcaaagatgaagggatc
atggaagagaaattgcagggcgacccatggctcaaaacgatgattgacttgttgcagatg
cctgatgtggaggaagcggaggagcttgcagaggtgatgcaagaggagtggttcaagacg
catctaccgcagtgtgaactagagtctgtgcgcgcgaggtgggtgcacaaaatcctcgca
aaagaagctcgcgagaaaagaatgggcatgctgatttcagagcaattcacagatgaacat
agtaagaacaaggggatgcaactgaccaacgcctgtgagcgttttgaaactatttacccc
agacacagagcaaatgacaccgttactttcatcatggcagtgaagaaaaggttgagattc
tcgagcccggccaaggaaaaagccaagctgcatgaggcatcgaactacggcaggtatttg
atggagatatttctgaagaaagtgccgttaaggcgggagcataacacagagttgatggcc
caagctaagcatgaatttgaattgaagaaaaccagcaagagtgcagccacaattgagaac
cacagtggcagatcctgcagggattggttagtggatattgggcagattttttctaagagc
caaatatgcactaaatttgataataggttcagggatgccaaggcggcacaaactatcgtg
tgtttccaacatgcagtgctatgcagatttgctccatacatgcggtacattgaaaagaag
ctgcatgaggttctgcccaagaagtattacattcactctggaaaggggcttgacgagcta
aacaattgggtcattgaggggcagtttgagggctgttgcacagagtccgactatgaagca
ttcgatgcttcgcaggaccagtacatcatggcttttgagatagaaataatgaagtacttg
ggactgccccgggacttgatagctgattaccagtacatcaagacacacctagggtctaag
ctaggcaactttgcaataatgaggttctcgggcgaggccagtaccttcctgttcaatact
atggcaaacatgctgttcaccttcatgaggtatgagataaagggcaatgagtacatatgc
ttcgcaggtgacgatatgtgctcatccaagaggttgcaggtcagcagggtgcatgaggct
tttctgggtaagttgaagttaaaagcaaaagtgcagcacacttcaaagcccaccttctgc
gggtggaatttgtgcgctgatggaatttacaaaaaacctcagttggtcctcgagcgcatg
tgcatagcaaaagagactgataatctgcggaactgtatagataattatgccatcgaagtt
gcctttgcgtacaaattgggtgaacgcgctgtgaaccgaatggatgaggaggagttggaa
gccttctacaactgcgtgaggataatcgtgaaaaacaagcatcactgtaggtccaatgtt
gttgaagttttcagtagcgcaaatgtttga
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integrated database retrieval system
