KEGG   Viruses: 13887839
Entry
13887839          CDS       T40000                                 
Symbol
D566_gp1
Name
(RefSeq) Rubus canadensis virus 1; replication-associated polyprotein
  KO
K26628  Betaflexiviridae RNA replication polyprotein
Virus
1243178  Rubus canadensis virus 1
SSDB
Motif
Pfam: Vmethyltransf RdRP_2 Peptidase_C23 Viral_helicase1 2OG-FeII_Oxy_2 AAA_19 AAA_30 PhoH ATPase_2 ResIII AAA_22 Peptidase_C34 AAA_14 DEAD
Other DBs
NCBI-GeneID: 13887839
NCBI-ProteinID: YP_006905861
RS: NC_019025
UniProt: K4MTI1
LinkDB
Position
NC_019025:64..6180
AA seq 2038 aa
MALSFRLPVSDVLNGFTSEEQSIISRTAVKKISEFESHNYEIANFSMPDFAKSKLSQAGI
YLSPYASMPHSHPISKTIENHILYRVLPNYVDNSFYFVGIKEGKLNFLKRRNKDLSLVSL
VNRLVTSRDCVRYPSDFHAIKTHKIEGLVPRTSNFFEHADSLKDLIPKMIREGSKKMFFH
DELHYWSKRDLVTFLDAVDPSLLICTIVYPTEILVKSRVSLNSWCYTFELIGKDILYSPD
GVASESYLQPISGGFLLKTNQIETPNGSVYAVDLLYNCFSHSLISLTKTNKLPPKLNFFS
NYEAISTTSINSLGPKLGDCYPISFDLISKIYLYLRTLKKPDLQSGMAKLRQMVSNPSCF
EIKFVEDFCRLVIEVPPQKSLLIPDASKIFLHSLMSIFPSSWVRNFNSFQEITLDNFISS
LAPLRVRVELKKLDFSDDLFSDLGLSHEEEFPSIPFDPEQLMESFSIGRSKKAIPDRVPS
PYNNLIFHGAEPIVDTRDKSVLIQMYHCVFNAFSNSDGFYVSSRTFFSVADGLYARNSIF
SNKALRLAFISMCSGRLVKDVYLLNIRRKIFFVRSPTSGAQIRTANLQWFFLKKRGNQKF
LRDSAFSDESNLETKVFTSWMKVVDEVLLINSSSSLGMRSTLRDSGLRNLWEYNCSTTSY
PAPSATESVEKVEEIEEESVATHENVPILKRDVSSFLKIAFNVPTVQEEVVEVKDVVETL
GTEEEFEAPALEKFGDAGIVFGRVKDMTLVGCLDMVFNENLHDVLHLKGRSAVYFTRCPC
LRYGHNGLQYLPQKWPIEFDWFLGENLGKYNSCLVQRFEVGAKIGFHSDDEKHYSSDNDI
YTVNLMGNAQLSIRPKGDKRKANEITRALVSQDSYLMPSGFQDKFEHSIRSMTEGRVSYT
FRKVVHDSLGQEIVHDSICLLDCFSENLFDVKISASQDLDFKNFQTFPVPADGDCFWHSV
GYLFGTNGIDMRKTCSDAMYDLGVDSNGSLVLQMIGFNWAEREAVALFARVMGVEVTVFY
IEEGVNWTFTPLEIDSSKKCYLVCKGNHFEPCLPKNGCVVRAVAACIGKKEIDVLSYLGR
GEFTDIYNQIMSGNGLSILDFERAFSMFGIKAFLETDGKVLEINSNGSIEGSFRLTDDHL
EFLPFKSVKHLSSLPVSNLIPVAKDQLEVISKCCTEVEYTPSFDRANTLSESLLNGTTGV
LCSRNLNNQVDFLEGNEKLCKEKRNLMILLGTFGSGKSFFFKKFIKDNSMRKVIFVSPRK
ALADIILQEISGIKGKKNWGSAKGNKVKCKKGYEVLTFEVMLKRIRSSFLKGTVVIVDEV
QLYPPGYVDLLCMLISSDCKVFLTGDPCQSDYDSDKDRMIFYGMEPDIMHILNEKSYNFN
VESRRFVGSIFRGRLPCEFLNGTACFNPKNYEMMGHIKSIDKNLIKSVDVILVSGFEEKR
ICWSHLGAGNKCLTFGESTGLTFESGIILITSDSFLCGKKRWITALPRFRKLLVFSNLTN
LSYEDIAQKAFGEPLYKFLTEKASTDDLLEILPGKPNFVKGFGFVGKSEGEKEVKLQGDP
WLKEKIFLGQSEDIQEEIQIYEEIKNEWFKTHVPLSEQESCRIQWLNRLLSREAREKRMG
SEISTQFAEEHHPGQGSALSNAAERYEAIYPRHKGGDSVTFLMAVAKRLTFSRPAVESAK
LRRAENFGKMMLDKFLKHVPLRRAHNQNMMAEAVAEFEEKKCSKSAATIENHSARSCNDW
LLDIANIFMKSQLCSKFDNRCIDKAKAGQTLACFQHSVLCRFAPYVRYIEKKLFEVLPKN
LYIHSGKSLEELEKWVMNGSFNSVCTESDYEAFDASQDHFIVAFELELMRYLGLPNDLIE
DYRMIKVKLSSKLGNFAIMRFTGEASTFLFNTMANMLFTFMKYDLSGKEFICFAGDDMCA
NKRLRLSSEYDGFLSKLKLKAKVQFTKSPTFCGWCLSEFGLFKRPQLVWERICIAVERGN
IAECLDSYAIEVSYGYKVGESLAGKMSSVELDSHYQCVRFIVKHQNLLKSNIKDLFAS
NT seq 6117 nt   +upstreamnt  +downstreamnt
atggcgctatctttcagattgcccgttagcgatgttcttaatggcttcacttccgaggaa
caatcgattatttcaaggactgcagtcaagaaaatctccgagtttgaatcacacaattac
gaaatcgcaaatttcagcatgcctgattttgcgaaaagtaaattgtctcaggctggaatc
tacttgagtccttacgcttcgatgcctcactcccatccaatatccaaaactatagaaaat
cacattttatatagagtgcttcctaattatgttgataatagtttttactttgtagggatt
aaagaaggtaaattaaattttcttaaaaggcggaacaaagatttgtctctagtctcttta
gtaaatcgtttggtcacttcaagggattgcgtgcgttacccctccgacttccatgcaatt
aaaacgcataaaattgaagggcttgttccacgaacttcaaatttttttgaacatgctgat
tcattgaaagatttaatccccaaaatgataagagaagggagcaaaaagatgttttttcat
gatgagctccattattggagcaagcgagatcttgtcactttcttggatgccgttgatcca
agtctgttaatctgcaccattgtttaccccactgaaattctggtcaagtctagagtttct
ctgaattcttggtgctatacattcgaactcattgggaaagacattctttacagtcctgac
ggagtcgcttcagaatcctatctgcaaccaatttctgggggatttctcttgaaaaccaac
caaattgaaactccaaatggttccgtttacgctgttgacctgctctacaattgttttagt
cattctttgatttcattgactaaaaccaacaaattgcctcccaagcttaatttcttttca
aattacgaggcaatttccacaactagcatcaacagtcttggaccgaaattgggtgattgt
tatccaatttcttttgatttgatttcaaagatatatctgtatttgcgtaccttgaagaag
cctgatttacaatctggcatggccaaactcagacaaatggtaagcaatccaagttgcttt
gaaattaaattcgtcgaggatttctgcagattggtcattgaggtgccaccacagaaatca
ctgttgatcccagatgcttcaaaaatttttctccattccctaatgagtatctttccaagt
tcttgggtgaggaacttcaattcctttcaagagattaccctcgacaactttatttcttca
ttagcaccgttgagggtgagagtagaactcaagaaattggatttctcagatgatttgttt
tctgatttagggttgtcacatgaagaagaatttccttccatccctttcgatccagagcaa
ctgatggagagtttttctataggccggagcaagaaagccatccctgatagagttccaagt
ccctataacaatttgattttccatggagctgaacctattgttgacacaagagacaagagt
gtattaattcaaatgtaccactgtgttttcaatgcattctcaaactctgatggtttctat
gtcagctcaagaacttttttttctgtggctgatggcttatatgcacgaaactcaattttc
tcaaacaaagctctaaggttggccttcatttcaatgtgttctgggcgcttggtcaaagat
gtttatttactgaatatcaggaggaaaattttttttgtgcgttcacccacatctggagct
caaattagaactgcgaacttacaatggttttttttaaaaaaaagaggaaatcagaaattt
cttcgggattcagctttctcagatgaatcaaacttagaaaccaaggtattcactagttgg
atgaaggtggtggatgaggtcctgctaataaatagctcttcttccctcggtatgagatca
accttgagagatagtggattgaggaatttgtgggagtacaattgttcaaccacatcttat
cccgctccctccgcaactgaaagcgtggaaaaagtggaggaaattgaggaggagtcggtt
gcgacccatgagaatgtcccgatcctcaaaagggatgtttccagtttcctgaaaattgca
tttaatgtgcctactgtgcaggaggaggttgtggaagtgaaagatgttgttgaaacctta
ggcactgaggaagaatttgaggcccctgctcttgaaaaatttggggatgctgggattgtc
tttggtcgagtaaaggatatgaccttggttggttgcttagatatggtgtttaacgagaac
ctgcatgatgtcttgcatctcaaagggaggagtgcggtatacttcaccaggtgcccttgc
cttcgttatgggcacaatggtcttcaatatttgcctcaaaagtggccaattgagttcgac
tggtttttaggagaaaatttgggcaagtacaattcgtgtttggttcagaggtttgaagtt
ggtgcaaaaattggttttcactctgatgacgaaaagcattattcaagtgacaatgatata
tacaccgtgaacttaatgggaaatgctcagttatcgataaggccgaaaggagataagagg
aaagcgaatgagatcactagagccttagtttctcaagactcatatcttatgccatctgga
tttcaagataaattcgagcattccatcagatcaatgacagaaggcagggtctcttacacc
ttcagaaaagttgttcatgattctctcggccaggaaatagtgcacgattcaatttgcctg
ctagattgtttctcagagaaccttttcgatgtcaaaatatcagcaagccaagatcttgat
tttaaaaactttcagacttttcctgtgccagcggatggtgattgtttttggcattcagtg
ggatatttatttggaaccaatggaatagacatgaggaagacgtgctctgacgccatgtat
gatcttggagttgattcaaatgggagtttggttcttcaaatgatagggtttaattgggcc
gaaagggaagctgttgctttgtttgctagagtgatgggcgtggaagtgacagttttttac
attgaggaaggggtgaactggacttttactcctcttgaaatagatagctcaaagaaatgc
tacctagtgtgcaaagggaaccactttgagccttgcttgcccaaaaatggatgtgtggtc
agggcagttgcagcctgcataggaaagaaagagatagatgttttgtcttatttgggtagg
ggggaattcactgacatctacaatcaaataatgtctggaaacggtctatctattttagat
tttgaaagagctttctcaatgtttggtatcaaagcttttctggaaacagatgggaaggtg
cttgagataaattcaaatggttctattgaggggtctttccggttaacagatgatcatttg
gaatttctacctttcaagtctgtcaaacacctgagttcattaccagtctctaatcttata
cctgttgctaaggatcaattggaagtgatctcaaagtgctgtacagaggtggagtacact
ccctcctttgatagagcaaacactttgtctgagtccctgttaaatggcactactggtgtg
ttgtgttcaagaaatctgaataatcaggttgatttccttgaaggaaatgagaaattgtgc
aaagaaaagaggaacttgatgattttgcttggcacctttgggtcgggaaagagctttttc
tttaaaaaattcatcaaagataattcaatgaggaaagttatcttcgtttctccaaggaaa
gctctagctgatatcatcttgcaggaaatatctggaatcaaggggaagaagaactggggc
tctgcgaaaggaaataaggtcaaatgtaagaagggttatgaagttctaacatttgaggtc
atgctcaagaggatcaggagcagttttcttaagggcacagtggtcatcgtggatgaagta
caactttacccacccggttatgttgacttgttatgcatgctcatatcttctgattgcaag
gtatttttgacaggagatccttgtcagagtgattatgattctgataaagacagaatgatt
ttttatgggatggaaccagacataatgcacattctaaatgaaaagagctacaatttcaat
gttgaatctagaagatttgttggatccattttcaggggaaggttaccgtgtgaatttttg
aatgggacagcttgcttcaatcccaaaaattacgaaatgatgggtcacatcaagagtata
gataagaatctgatcaagagtgttgatgtaattcttgtttccggttttgaagagaagagg
atttgctggtctcaccttggagcgggtaacaaatgtctgacatttggtgaatccacaggt
ttaacgtttgagtcagggataattctaataacatcagattcattcctttgtggcaagaaa
aggtggattactgctcttcctaggttccgaaagcttctcgttttttcaaatttgaccaat
ctatcatacgaagatatagctcagaaggctttcggggagcctctttacaagttcttgact
gaaaaagcctccactgatgatctccttgagatattacctggcaaaccgaattttgtcaag
ggatttggttttgtgggtaaatcagaaggggaaaaagaagtcaaattgcaaggggatcca
tggctgaaagagaagattttccttggtcaaagtgaggacatccaggaagagattcaaatc
tatgaggaaattaaaaatgagtggtttaaaactcacgtccctttgagtgagcaagaatcc
tgcagaatccaatggttgaacaggttgttgagtagggaagcaagagagaagaggatgggt
tctgaaatttccacacagtttgctgaagaacatcatcctgggcagggatccgctttgtca
aatgcagcagaaagatatgaagcaatataccctaggcataaagggggtgattcggtgact
ttcttgatggctgtggctaagaggttgactttttctaggcctgcagtggagtctgccaaa
ttgaggagagctgagaatttcggaaagatgatgctagacaaatttttgaagcatgttccc
ttgagaagggctcacaatcagaacatgatggctgaagcagttgctgaatttgaagaaaag
aaatgctcaaagagtgcagctacaattgaaaatcattctgcacgatcatgcaatgactgg
cttttagacatcgcaaacattttcatgaaatcgcaattgtgttccaaatttgacaatagg
tgcattgacaaggccaaagctggccagactcttgcatgctttcagcactctgtgttatgt
agatttgcaccttatgtgagatacattgaaaagaaattatttgaggtgttaccaaaaaat
ctttacatacacagtggcaagagcttggaggaactggaaaaatgggttatgaatggttca
ttcaattccgtgtgcactgagtcagattatgaagcctttgatgcaagccaggatcatttt
attgtcgcttttgagttagaactgatgagatacttgggtttgcctaatgacctgattgaa
gattacaggatgattaaggtaaagcttagttcaaaattgggcaatttcgcgataatgcgt
ttcacaggagaggcttcaactttcttattcaataccatggctaacatgctcttcactttt
atgaagtatgatttgtctggcaaagaatttatttgcttcgctggtgatgacatgtgcgct
aacaaaagactaagattgtcttctgagtatgatggtttcttgagtaagctaaagctgaaa
gcaaaagtgcagtttacaaaaagtcctaccttttgcggatggtgtttgtctgaatttggt
ttatttaagaggcctcaattggtttgggaaagaatttgcattgctgttgaaaggggcaat
attgccgagtgcttggactcttacgccatcgaggtgtcttacggttacaaagtaggcgag
tctcttgctgggaaaatgagtagtgttgaattggatagccactaccagtgcgtcaggttc
atagtgaagcaccaaaatttgctgaagtccaacatcaaggacttatttgcttcttga

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