KEGG   Viruses: 1403439
Entry
1403439           CDS       T40000                                 
Symbol
CsCMVgp1
Name
(RefSeq) Cassava common mosaic virus; RNA-dependent RNA polymerase
  KO
K26615  Alphaflexiviridae RNA-directed RNA polymerase
Virus
39046  Cassava common mosaic virus
SSDB
Motif
Pfam: Vmethyltransf Viral_helicase1 RdRP_2 AAA_16 TFIIB_C_1 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 1403439
NCBI-ProteinID: NP_042695
RS: NC_001658
UniProt: Q65974
LinkDB
Position
NC_001658:77..4426
AA seq 1449 aa
MALVRNVFSQITDPSLKAVIQDDSYRTIKAELNQAKIINPYAQTGEAADLLETLGVITHP
YAIATHTHAAGKALELDLYHSVSHYLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSWV
EPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPP
EALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDG
SEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSR
QPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISEL
SSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV
KILSCLGGWDNEMPFKFRTLPGESDLSNDELGPQLSHYDTSPKPAPSAIEASEEAAALLL
KTRGLVGKRRVARLRSEGDPEVAACLKIKGEPTTTQSPSSSGLSVLEKELDQIATQQTKL
IVQEEEREDFIKTVLNKRRKACEDKPTLPLSPELEKRHEALKSKAESSEASKTEPRKDEN
YTEMVNKTLIENAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDIKTGIPVH
RETKAPQELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLK
VDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPE
NFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQ
AMIAQLEPSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLL
VPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHF
INTAPTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTI
LEEFTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISH
KQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPFEELWELAAREIQHTYLSKSTQMLKN
GERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRR
IRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAK
HHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVA
QDSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDP
LKLAASFRLAKERGKRELDNCLENYARDMKLAYDLGDDLLELLTPEQAQLHQVTVRDMIK
LGASDILNL
NT seq 4350 nt   +upstreamnt  +downstreamnt
atggcgttagtaaggaatgtcttctctcagattacagatccaagcctaaaagcagtaata
caagatgattcatatcgaaccatcaaagcagaactcaaccaggcaaagatcataaatcca
tatgcgcaaacaggcgaagcggcagatttgttggaaactttgggcgtcatcactcaccca
tacgccatagcaacgcacacacatgctgccggaaaagctctggaactagatctataccat
tcagtatcacattatctccccaggaaaagcccggtcaccttcatgttcatgaaaccagca
aagctacaatacttgagaaggggcccacaacaccgtgaccactttgttaattcttgggta
gaacccaaagatctcgctagatacccagaacagacagtggtagacggaatcccaccaatc
caaacatctattgctttcatgggggacaccctccacttcctcacaccaaaatttgttggt
acgctcttcgcgcgatctcccaaactcaaaaccttctatgctacaatggtccttccaccc
gaggctctacacaagatgaactccctatacccccagatatacacactgcagtataaagaa
aaaggtttcatttatactccaggtggccatgctggagcttcttactaccatgaatactca
caattgggctggctagatgttggtctcatagagtatttcgaagagaatgctcctgatggc
agtgaatatttgggaactaagtgggctgtcactgcacaaagaatagaaactaagggcgca
aatcatctttttgttttccagaggggaaggctccaaactccacaaatgagatctattgcg
accaacactcaatacatcactgtgcccgctgtcttcttgcctaagaaattcaattctaga
caacctctgaagaagacgattgcacagcaaatgtttctctacatcaaatcagtcaaacaa
gttactgagagagacatatacagcaaactgagacagctcatcaaaacttcagagctgcaa
gaatactccccagatgagctcgtactactggcaaactacttcatgctcatctctgaactc
agttccaaagcctcagcggaagaggttttagcaggatcgctgtttaagaaactgttccgc
cccataaaatccaaagtcaccgcattcatccacaaactctttggccaaccagaattcgca
caactacttgaagctctgttgtggacaaatgttgacctgatccttcctgtgaggtatgtc
aaaatcttgagctgcctgggaggctgggacaatgaaatgcctttcaaatttagaaccctt
ccaggagaatcagatctttcaaacgatgagctgggcccccaactgtcacattatgacaca
tctccaaagccggctcccagcgctatcgaggccagtgaggaagctgcagcgctcctcctc
aaaactagaggcttagtgggaaagagaagagtggccagactgagatcagaaggggatcct
gaggtcgctgcttgcctcaagataaagggtgagccaacaacaacacagagcccctcctct
tcgggcctctcagtgttggagaaagagctggaccagattgcaacacagcaaacaaaattg
atcgtccaggaggaagaaagagaggacttcatcaaaactgtgctgaataaaagaagaaaa
gcttgtgaagataagcctactctgccacttagtcctgaactggaaaagagacacgaggca
ctcaaaagtaaagctgaaagttcagaggcaagcaagacggaacccaggaaggatgagaac
tacacggaaatggtaaacaaaaccctcattgaaaacgccaaagaagctggtttaccatgg
gctgtttggatgccaaaactgaatgccttgggctttgaagctaaggagaaacaaatatca
ccaatcaccaaatccatgatcatgccaatcactgacatcaagactggaattccggtgcat
agggaaactaaagctccacaggaactcttagacttactcaaagctttgagtaggatgccc
actctctggactccagacaccctcagggcgaagtccttcacttcagatattaagaatggg
agaacaggaaagtgcttgcaacaagagagccaatcatggaaggaggcacagaccctcaag
gttgatcacaacattcggcccgttccactctctgtcatacatggggcagggggttctggg
aaaagtgccgcacttcaggacctactccgcgatcacccagaactaccaattcaagtgatc
ctccccaccaatgagctaaggatggactggctttcaaaactcccaaggaatagacccgaa
aatttcaggacatttgagaaagcctatctgcagacaaatgcaccgagtatcatcatggac
gactacggaaaactaccacaagggtatgtggaagcatttgccgttacgcatcctaatgta
gaactcattgtgctaacgggggacaacaagcagagtgtgcaccatgaaacaaatgaacaa
gctatgattgctcaacttgagcctagcacacagatctttagccaattttcacgctattac
atcaatgcaactcacagaaatgcgaaaaagttggctaacatgctgggggtttactcagac
aacaataaggagctcaagataacccatggcttccagcccattaaagacatacatcttctg
gtaccaagtctgatcaagaaagcagccttctctgaggcgggacacaaaacttcaacatat
gcgggatgtcagggcatcacagcacgcaaactgcaaattctgcttgattcaaacacccca
atgtgctcacaggaggtgctgtacaccgctctatctagagctgtggactccatccacttc
attaacacagcccccacaagctcaaatttctgggaaaaactggaagctaccccgtacctc
aagacattcctgtccatggttcgagaagacaaaattctagagtggagaccaaaagagcct
gaacctgcaaaggaggagcccccaaagacgcactttccggtggagaatggcaacacaatc
ctcgaggagttcactgaggagctagctcaaaagcatgaaagagaaatcttcaatgagagt
cacggtcacacaaactgtgtgcaaactgacaacaaaatcattcaaacacttagtcatcaa
caggctaaggacgaggctcttctctgggaaaccatcaaagctaggctcgtgataagtcac
aaacaacacaattggacagagttcgtgaagaagaaagacattggggacatcctctggctg
aactacaaaagagctatgcatttgccagaagatcccatcccatttgaagagttgtgggaa
ctagctgcccgggaaatccaacacacatatctgagcaagtccactcaaatgctcaaaaat
ggagagaggaggcaatcacctgattttggggagaaggacatcctgatattccttaaaagt
caatgggtcaagaaaatggagaaactgggagctccaaagattaagccaggacagactata
gcgtccttccaacaatccgctgtcatgctatatggcacaatggcaagatacatgaggagg
attcgagatatctacatgccggagcacataatgattaactgtgagagaactcccactgac
ctctcatactgggcattaaattactggaacttcgacaaaccgtcctacgccaatgacttc
acagcatttgatcaaagccaagacggagcaatgcttcagtttgaaattttaaaagcaaag
caccacaacattcctgaatgggtgcttgaagggtaccttgacattaaattggactcaagg
atattcctgggcacactgagcattatgagattgacaggagaataccaaacttttgatgca
aacactgaatgcaacatagcatacacgcatactagatttgacatacctgaaggagtagcc
caagacagcgctatggacgccacatgcttggaaaaaccctcttttaaacttattgagtcc
gaactctcactcaaattgtatgcgggggattgcaagccctgccttaaagcacaaattccg
ggagagtgggctgaattctgcgggtacctcattacacccaagggcttgatcaaagatcca
ctaaagctggcggcctcctttcggcttgccaaggagagaggaaagagagagctagacaac
tgcctggaaaattatgccagagacatgaaactagcttatgatttgggagatgatcttttg
gaactgctaactcctgaacaggcacaacttcatcaagtaacggttcgtgacatgattaag
ttgggtgcctcagatattttgaatctctaa

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