Viruses: 1461228 Help Entry 1461228           CDS       T40000                                  Symbol GarVXgp1 Name (RefSeq) Garlic virus X; replicase   KO K26615   Alphaflexiviridae RNA-directed RNA polymerase Virus 150284  Garlic virus X Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Vmethyltransf Viral_helicase1 RdRP_2 AAA_16 AAA_22 AAA_30 Motif Other DBs NCBI-GeneID:  1461228 NCBI-ProteinID:  NP_044571 RS:  NC_001800 UniProt:  O09498 LinkDB All DBs Position NC_001800:98..4729 Genome browser AA seq 1543 aa AA seqDB search MTTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSP FATTSNTHAADKIIENDCLEIIGRYLPKEPVTLIQLKRAKLHLLKRGPNTDIFQNYCHEP KDVLRFGLTNPHVCPVVNTSCAVISDTLHFMSSQQVWTLFKRNPKLQRLYGTLVLPVEAL NKLPSLFPEIYKLEYYDNHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGTESNHLSIEKIE TKAAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYPSEANVQRAYPHVFIKRLQL YCFSVKAVSLRDIFAKIRQVIPTEDLSRFSTADLIRLANYLLFITGMQQTSDYQSPLMES LLGKLCLSIRARVREFFQNLLGKSSYAALLTVTDVRPVYFTTKPIRRPICGQPWFDEAEV ESKPATPTITGYPNPSPDDLDLLAEFEQHERAMMEENCFTSKTSATANRAQNPQQNRERV TPEKLAHSSDESHTQITSSQGVNDHTWPTEQSQPTNTCKEITDDENMMDGHVTDWTDSDS DHSDEDIETQPETNLSQSIHDDLLPDESDLPDLESVADEQSDAEDNGDSTIDQANLCNTT CDAETDKSAQTPAEAKSSPKSASRVDLTPLDSDTVEILRLHGFTNYKPQHDGDFQIAPVF YNHQACNLPLYDGITNSAQSKFIEMAHALKRNCYNYILEPRRATAFMSDVKNNLTGLVLP KLDRDLLTSWVALSENACRKVGLIVIHGAGGAGKSRALQEILRSNSIDTNQVNIIVPTIN LAVDWKKKLPKIDPRRVMTFEKACEREGKSVVIMDDYGKLPAGYIDAYLAIKFNVEIVIL TGDQRQSVFHNDRKDSQIALLTSNTAHFKRYCDYYLNATHRQPRRLANPIRVHAEREVGG AIKHSTLIPTHAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIVLDKDTPLCSDE VLYTALSRASETITFVNTYSNNKDFLDKLDSTPYLKTLISGVREDEQVGWENPPPEPEVR DAPTKTHIPVANNNVQLESKIETMEDKDTRELWSGEEKTNLMQTQDPVIQLFPHQQAKDE ALFKITINERIKLASPETNCKALKETLNTGNLLFEAYADFMNVPRETQPFDKRLWAHCRQ LALRTYLSKPTTNLQQGAMQDPDFPENAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQS TVLLTTTMALYLRKKRESHQPDNVFVMCEKTPEQFNSFVLTRWDFTRPNYTSDYTQYDQS QDSAFLNFELRKAKHLGLPDEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNI AYDALRFQLDSTVNASYAGDDLVRDRARSERPGWKYAEPLFSLKAKPLVTSKPDFCGWRL TKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELAKHQL VTRTLIKKGMQPPSSGEHLPTFHVTSDRLIRDPKAIQVLSYESDRIMVPTDVIEDHFTLA SRTDRDDMTAESNRRASGLCTPINPGDSTGALLTDMFPSIATL NT seq 4632 nt NT seq  +upstreamnt  +downstreamnt atgacaactgtgcagaagttactcgaccaaatttctgatcccaacgctagggcggcgtat tcacaagactgtctttctgctgccaaaaatgcagcaacgaaagcgatgaccattgccccc tacgcagtcacacagactgaagcgcttactttggagcgcattgggatcaccacctcacct ttcgccacgacttccaacacccatgctgccgataaaattattgaaaatgattgcttagaa attatcggtagatacttgccgaaggagcccgtcacacttatacagctcaaacgggctaag ttacatttgttaaaaagagggcctaatacagacatcttccagaattattgtcatgagcct aaagacgtactcagatttgggttaacaaacccccatgtatgccccgtggtgaacaccagc tgcgcggtaatatctgacacgctccattttatgtcgtcacaacaagtgtggacactgttt aagcgaaaccccaaattacaaagattgtatggtactctagtgctgccggttgaagcactc aacaagctacccagcttattcccggagatttataaactagagtactacgacaaccacttt gcgtatatgcctggtgggcatgggggcggagcctacattcactcttatggcacactcaag tggctcagcacggcgcaaattggcacggaaagcaatcaccttagcattgagaagattgaa acaaaagccgcacaccatataatgttgatacagcggaggagaccagagttaccatggcca ctaccaccactctgggttttccatgcctctgactatgttagactacctgaaatattctac cccagtgaagctaacgtacagagagcatacccccatgtatttattaaacgtctccagctg tactgcttctccgtgaaagcagtgtcacttcgtgacatctttgcaaagatccgccaagtg atccctacggaggatttgtcgagattctccacagcagacctaatacgattggcaaattac ctgcttttcataaccggcatgcaacagacaagcgactatcaatcaccgttaatggaaagc ttgcttggaaaactatgcttatctattcgggccagggttcgtgagttcttccaaaacttg ctgggcaaatcctcatacgctgcactgctcactgttacagacgtgagaccagtctacttt accaccaaaccaatcaggaggccaatatgcggacaaccgtggtttgatgaagcagaggtg gaaagtaaacccgcaacacccacaattacgggctaccccaatccatcaccagatgaccta gacctgctcgccgaatttgaacaacatgagcgagcaatgatggaagaaaactgctttaca tcaaaaacgagtgccacagcaaaccgagctcaaaaccctcagcaaaaccgggaacgcgta acacctgagaagctggcacacagcagtgacgaatcccatacgcaaatcacgagctcacag ggagtgaatgaccacacgtggccaacggaacaatcgcaacccaccaacacatgcaaagaa attactgatgacgaaaacatgatggatgggcatgtcacagactggactgatagcgacagt gaccatagcgacgaggacatcgagacacaacctgaaaccaatctttcacaatcaatccac gacgatctgctgcctgacgagagcgacttgcctgacttagaaagcgttgcagacgaacag agcgatgcagaagacaatggagactctacaatcgaccaagcgaacctctgcaacacaacc tgcgacgctgaaactgataaatcagctcaaacacctgcagaagcgaagtcatcgccaaag agtgcttcgcgagtggacttgacacccctcgatagtgacactgttgaaatactcaggcta catggatttactaactataaaccacaacatgacggagatttccaaatagccccagtgttc tataatcatcaagcatgtaatctacccttgtacgatggaatcactaattccgcccaatca aaatttatagaaatggcacacgcattgaagagaaactgctacaactacatattggagcca aggcgagctacagctttcatgtcggacgttaagaacaatttgaccggactagtactacca aagctggatcgagatttgctgacatcatgggtagccttgtctgagaatgcatgtaggaaa gtaggccttatagtgatccatggagcgggtggagcagggaaaagtagggcgttgcaggag atactgagaagcaattcaatcgacactaaccaagttaacatcattgtgccgacaatcaat cttgctgtcgactggaagaagaaactgccaaaaattgatccacgccgtgtgatgacgttt gaaaaggcatgcgaacgtgagggcaaatcagtcgttataatggatgattatggtaaacta ccagctggctatatcgacgcatacctagcaatcaagttcaatgtggaaatagttatcctc accggtgaccagaggcagtctgttttccataacgatcggaaagattcacaaatcgccttg ttgacatccaacactgcccatttcaaacgctactgcgattactacctcaatgctacacac cgacaaccacgaagattagctaacccgattagagtgcacgcagagagggaagtgggagga gccatcaaacattccacactcatcccaacacacgccatgacgctcgtcccagccttcaga agccaatcacttcttacagatttgggcagacaagctatgacgtatgctgggtgccaaggg ctcacgttaccacacctaacaattgttttagataaagacacacccttgtgttctgatgaa gtgttgtacactgctttgtcaagagcctcagaaacaatcaccttcgtcaacacatattcg aacaacaaagactttcttgacaagttagattccaccccatacctcaaaacactaatctca ggggtgcgagaagatgaacaagtgggatgggaaaatccaccaccagagccagaggtacga gatgctccaacaaaaacacatatcccagtggctaataataatgtgcagctcgagagcaaa atagaaactatggaagacaaagacaccagggagttgtggagtggggaagagaaaacaaat ctcatgcaaacacaagaccccgtgatccagctgtttccccaccagcaggccaaggatgaa gcgctctttaaaatcacaataaatgagagaatcaaattggcgagccctgagacaaactgc aaagctctcaaagaaactctcaacactggaaacttgctgtttgaagcttacgccgatttc atgaacgtgcctcgggaaactcaaccattcgacaagagactttgggcccactgcagacaa cttgccctacgcacatatctctcaaaaccaacgacgaatttgcaacaaggagccatgcaa gatccagacttccccgaaaatgctatcgcgctgttcaataaatcacaatgggttaagaaa cttgagaaagttggatgcaaatttaaagcgggccaaactatatcagctttcaaacagtca actgtcctactcacaaccaccatggctttgtacctacggaagaagcgagaaagtcaccaa cccgataatgtcttcgtgatgtgcgaaaagacgccagaacaattcaattcatttgttctc actagatgggatttcacgaggccaaactacacatccgactacacacagtatgaccaatcg caggactcagcattcctcaatttcgagttaaggaaagccaaacaccttggtctgccagac gaagtcgtagacttttacgcgttcatcaagacacacgctaaaacattcctggggaaccta gcagttatgaggctaagtggcgagggaccgacttttgacgcgaacacagaatgcaatata gcatatgacgccctcaggtttcaacttgactcgacagtgaacgcttcgtacgctggggat gacttggtgcgtgatagagcccgtagcgagcgcccggggtggaaatatgcagaaccccta ttttcgttaaaagctaaaccgctagtgactagtaagccagacttctgcgggtggagatta accaagtatggaattgttaaatccccagtacagttgtatcaatcactgcaactagcgcta cgacttggtaaggttgaagaggttaagcgaagctacgccatagactacctgttcgcgtat cgacttggagaccagctttacgatatattcgacgaagacgaactagcgaaacaccaattg gtcacaaggactttgatcaagaaaggcatgcagccgcccagttcaggagagcatttacca actttccatgtgacatctgaccggctcatacgagatccgaaagcaattcaggtgttgagt tacgaatcagatagaatcatggtccccaccgatgttatcgaagaccacttcacattagct agcagaacggaccgtgacgacatgacggctgaaagcaatagacgagcttccggactatgc acgccaatcaaccccggagacagtaccggcgccctgttgacagatatgtttcctagcatt gccacactttaa

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