KEGG   Viruses: 1487526
Entry
1487526           CDS       T40000                                 
Symbol
ORF42, EhV1gORF42
Name
(RefSeq) Equid alphaherpesvirus 1; major capsid protein
  KO
K26014  Herpesviridae major capsid protein
Virus
10326  Equid alphaherpesvirus 1
SSDB
Motif
Pfam: Herpes_MCP
Other DBs
NCBI-GeneID: 1487526
NCBI-ProteinID: YP_053088
RS: NC_001491
UniProt: P28920 A0A0A7D983
LinkDB
Position
NC_001491:77703..81833
AA seq 1376 aa
MDRRSEAFKIPVPEVIPAGQILSTIEVSSHRTLFDFFKQIRSDDNGLYAAQFDVLLGTYC
NTLTLVRFLELGLSVSCVCTKFPELNYVNDGTIQFEVQQPMIARDGPHPVDQPTHTYMMK
HIEQRSLSAAFAIAAEALGLIGGTTLDGTQISSSLRVRAIQQLARNVQTVLDSFERGTAD
QLLRVLLEKAPPLTLLAPLQIYRDEGRLASRVNRAVLVSELKRRVIEDTFFLTKHERNRK
ELVVARLAELVNCTAPSVAVTRMTHSDTKGRPVDGVVVTTAGVRQRLLQGILTLEDMAAD
VPVTYGEMMITGTNLVTALVMGKAVRNLDDVAHHLLGMQRDQVRANEKLIKDYEDVPSTA
RVRADLVLVGDRLVFLEALEKRVYQATNVPYPLVGNLDLTFIIPLGIFKPATDRYSRHAG
SFTPTPGQPDPRTYPPQTVYFFNKDGNLVQLSFDSAAGTVCHSSFLDVDSVLVAIRREPH
ELHCAFGAYVTLPPAGTLLDQMRRFFERWHMLMPARPRWTAEALMTIDQLLSPGNANLRL
ELHPAFDFFVAPADVVIPGPFDMPNVMPTVMAMPRLINGNIPLPLCPVEFRDSRGFELSV
DRHRLNPATVLAVRGAFRDANYPMVFYILEAVIHGSERTFCALARLIIQCIVSYWRNTHQ
VAFVNNFYMIMYINAYLGNGELPEECTAIYRDLLEHVQALRRLVAEYTVPGEAVGGQGHD
ALNNVLLDPALLPPLIWDCDPILHRADMGRARAQELWVDGVDYAAIPWVEMAEVNFGNTG
GHLVHNRPIRGENKRNPIVPHHDPEWSVLSKIYYYAVVPAFSRGNCCTMGVRYDRVYPLV
QTVVIPDLGAEEIAPTSPSDPRHPLNPRHLVPNTLNILFHNARVAVDTDALLLLQEVVTN
MAERTTPVLATAAPDAGTATAVTQEMRTFDGTLHHGILMMAYQRNDETLLEGTFFYPAPV
NALFACPEHLGALPGLNAEVLEAARDVPPVPHFFGGNYYATVRQPVAQHAVQSRADENTL
TYALMAGYFKLGPIALSHQFATGFHPGFAFTVVRQDRFLTENILFAEKASESYFMGQLQV
NRHEAVGGVNFVLTQPRANVDLGVGFTAAYAAAALRTPVTDMGNLPQNLYLTRGTIPMLD
GDADAYLRRVVNTGNRLGPQGPRPIFGQLMPATPAGVAHGQAAVCEFIVTPVSADLNYFR
RPCNPRGRSAGPVYACDGEADAVDVMYDHTQGDPAYPSRATVNPWASQRNSYGDRLYNGK
YNLNGASPVYSPCFKFFTPTEVEAKGRNMTQLIADVGASVAPSTSNTEIQFKRPHGSTDL
VEDPCSLFQEAYPLLSSTDTALLRTPHIGEIGADEGHFAQYLIRDESPLKGCFPRI
NT seq 4131 nt   +upstreamnt  +downstreamnt
atggaccggcgctcagaggcgttcaaaattccggtaccagaagtaatccccgccggacag
attctatcaactatagaagtgtcgtcccaccgcactctatttgactttttcaagcagatt
cgctcggacgataatggcctttatgcagcgcagtttgacgtgctactcggaacgtattgt
aacacgctaacgctggtgcgcttcttggaactaggattatccgtatcgtgcgtgtgcacc
aagtttccagagcttaactacgttaatgatggcaccatccaatttgaagtgcagcagccg
atgatagctcgggacggaccccaccctgtggatcagcccacccacacctacatgatgaag
cacatcgagcagcgatctctgagcgcggcctttgctatcgcggcagaggccctgggcctt
atcgggggcacaaccctagacggtacgcagatctcatcctccctgcgggtgagggctata
cagcagctggccagaaacgtgcagacggtgctagactcgtttgagcgcggaaccgccgat
caacttttgcgtgttttgctggagaaggcccccccgctgacccttttggctcccctgcag
atttaccgcgatgagggacgccttgcgtctcgagtcaatcgcgccgtgctggtctcagag
ctcaagcggcgagtgatagaagacaccttctttctcaccaagcacgagcgtaacagaaag
gagctggtggtagcccgcctggctgagctggttaactgtacggccccctccgtcgccgtt
actagaatgactcattcggacacaaagggaagacccgtggacggtgtagtcgttacaact
gctggcgtgcgccagcgcctcttacaggggattctaactctggaggatatggccgccgat
gttccggttacgtacggcgagatgatgattaccggcacaaacctagttactgctcttgta
atgggcaaggccgtgagaaacctggacgacgtagcccaccacttgttggggatgcagcgt
gatcaggtcagggcgaacgaaaaacttattaaagactacgaggatgtgcccagcacggcg
cgagtacgtgccgacctagttctcgtgggggaccgcctagtctttctggaggccctggaa
aagcgcgtgtaccaggcgaccaacgttccgtacccgcttgttggaaatttagatttgacg
tttatcattcccctgggcatcttcaagccggccaccgaccggtattcgcgccacgcagga
agctttacgccaacccccggacagccagaccctcgcacctacccaccccaaaccgtttac
tttttcaacaaggacggtaatctcgtacagctatcctttgacagcgccgcggggaccgtg
tgccacagctcgtttttggatgtggattctgtgctggtggccatccgacgagaaccccac
gagcttcactgcgcgtttggggcatacgtgaccctacccccagccggcactctgcttgac
cagatgagaaggttttttgagcgctggcatatgctcatgccagcgcgaccccgctggacc
gcggaggcgctaatgaccatcgaccaacttctttcgccaggcaacgcaaacctgcgcctg
gaacttcaccccgcatttgattttttcgttgccccggcggatgtcgtcattccaggtccg
tttgacatgccgaacgtcatgcccactgtgatggccatgccacgcctcatcaacggtaac
atccccctccccctatgtcctgtggaatttcgcgacagtcggggcttcgaactgagcgtg
gatagacacaggctcaacccggcgacggttttggcagtgcgtggtgcgttcagagacgcc
aactaccccatggtgttttacatcctcgaggcggtgattcacggtagcgaacgcacgttc
tgcgcgctagccagacttataattcagtgtatcgtcagttactggagaaacacccaccag
gtggcgtttgtcaacaacttttacatgatcatgtacataaacgcctacctaggaaacggc
gagctgccagaggagtgcacggctatctaccgcgaccttctggagcacgtccaggctctc
aggcggctagtagccgagtacaccgttcccggagaagccgtgggcggccagggacacgac
gcgctgaacaatgtgctgctcgatccggccctgctaccgcctctcatctgggactgcgac
ccgattttgcacagggccgacatgggcagggccagggctcaggagctatgggtggatggg
gtggactacgccgccattccttgggtggagatggccgaagttaactttggaaacaccggc
ggccatttggtgcacaacaggcccattcgaggagagaacaagagaaacccgattgtacct
caccacgacccagagtggtcggtgctatccaagatatactactatgcggtggtgcctgca
ttctcgcgcggtaactgctgtaccatgggagtacggtacgaccgcgtatacccgctcgtt
cagacagttgttatcccagacttgggggcggaggaaattgccccaaccagccccagcgac
ccgcgccatccgctgaacccacgccacctagtgccaaacactctaaacatcttgtttcac
aacgccagagtggccgtcgacaccgacgccctgctgctactccaggaggtagtcaccaac
atggcggagcgcactactcccgtgctggcaaccgccgcgccggacgcgggaaccgccacc
gccgtaactcaggaaatgcgcactttcgacggaaccctccaccacggcattttgatgatg
gcctaccagcgtaacgacgaaactcttttggagggcaccttcttttaccccgcccctgtc
aacgctctctttgcctgccccgagcacttgggggctcttcccgggcttaacgcagaagtc
ttggaggccgctagggatgtgcccccagttccccactttttcggtggaaattactacgct
acagtcagacaacccgtggcgcagcacgccgtacagagccgcgcggatgagaacacgcta
acgtacgcgctgatggcggggtacttcaaactcgggccaatagccctgtcccatcagttt
gccactgggttccacccagggttcgcctttaccgttgtgcgccaggacaggtttctcacg
gagaacatcctctttgccgagaaggcgtctgaatcgtactttatgggccagctacaggtg
aaccgccacgaggcggttgggggggttaactttgttctcacccagccacgtgctaacgtg
gacttgggggtgggcttcaccgccgcctacgcagccgccgcactacgcacgcccgttaca
gacatgggaaatctgccacaaaacctgtatctgacacgcggtactatacccatgctggac
ggagacgcggatgcgtacctgcggcgcgtggtcaacaccgggaatcgccttgggccccag
ggcccaaggccaatctttgggcagctgatgccggccacgccggcgggcgttgcccacggc
caggccgccgtgtgtgaatttatcgtcacgccggtgtctgcggacttaaattattttagg
cggccatgcaaccccagaggaaggagcgccgggcccgtgtacgcgtgcgatggagaggcc
gacgcagtggacgttatgtacgaccacactcagggagatccggcctacccgagccgcgcc
accgttaacccgtgggcatcccagcgcaactcttacggcgatagattgtataacggcaag
tataacctgaacggggcatccccggtgtacagtccatgctttaagtttttcacacccacc
gaagtggaagccaaggggcgtaatatgacacagctcatagccgatgtcggtgccagcgtc
gcccccagcacgtctaacaccgaaatccagtttaaacgcccccacggctcgacggacctg
gtggaagacccgtgttcgctgtttcaagaagcgtatcctctactcagctctacggacacg
gccctgctccgcacgcctcacatcggtgaaatcggcgctgatgagggacatttcgctcag
tacctaattcgcgacgaatccccgctaaaaggctgttttccgcgaatttag

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