Viruses: 1490001
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Entry
1490001 CDS
T40000
Symbol
gag-pol, HIV2gp1
Name
(RefSeq) Human immunodeficiency virus 2; gag-pol fusion polyprotein
KO
K22951
HIV Gag or Gag-Pol polyprotein
Virus
11709
Human immunodeficiency virus 2
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RVT_connect
Gag_p17
RVT_1
RNase_H
Gag_p24_C
RVT_thumb
IN_DBD_C
rve
Integrase_Zn
RVP
Gag_p24
zf-CCHC
Asp_protease_2
gag-asp_proteas
rve_3
Motif
Other DBs
NCBI-GeneID:
1490001
NCBI-ProteinID:
NP_663784
RS:
NC_001722
LinkDB
All DBs
Position
NC_001722:join(1103..2398,2398..5754)
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AA seq
1550 aa
AA seq
DB search
MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKI
LRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEAKKLAQRHLVAETGTAEKMPN
TSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEG
CTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGT
TSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVD
RFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQ
KARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCGKPGH
IMANCPERQAGFFRVGPTGKEASQLPRDPSPSGADTNSTSGRSSSGTVGEIYAAREKAEG
AEGETIQRGDGGLAAPRAERDTSQRGDRGLAAPQFSLWKRPVVTAYIEDQPVEVLLDTGA
DDSIVAGIELGDNYTPKIVGGIGGFINTKEYKNVEIKVLNKRVRATIMTGDTPINIFGRN
ILTALGMSLNLPVAKIEPIKVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEE
APPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRISIL
DVGDAYFSIPLHEDFRQYTAFTLPAVNNMEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLE
PFRKANPDVILIQYMDDILIASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQW
MGCELWPTKWKLQKLQLPQKDIWTVNDIQKLVGVLNWAAQIYSGIKTKHLCRLIRGKMTL
TEEVQWTELAEAELEENKIILSQEQEGYYYQEEKELEATIQKSQGHQWTYKIHQEEKILK
VGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETWEQWWDNYWQVTW
IPEWDFVSTPPLVRLTFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKVLE
QTTNQQAELEVFRMALADSGPKVNIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEA
VYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSIIKELTHKFGIPL
LVARQIVNSCAQCQQKGEAIHGQVNAEIGVWQMDYTHLEGKIIIVAVHVASGFIEAEVIP
QESGRQTALFLLKLASRWPITHLHTDNGPNFTSQEVKMVAWWVGIEQSFGVPYNPQSQGV
VEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEI
QFLQRKNSNFKNFQVYYREGRDQLWKGPGELLWKGEGAVIVKVGTDIKVVPRRKAKIIRD
YGGRQELDSSPHLEGAREDGEMACPCQVPEIQNKRPRGGALCSPPQGGMGMVDLQQGNIP
TTRKKSSRNTGILEPNTRKRMALLSCSKINLVYRKVLDRCYPRLCRHPNT
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgagaaactccgtcttgagagggaaaaaagcagacgaattagaaaaagttagg
ttacggcccggcggaaagaaaaagtacaggttaaaacatattgtgtgggcagcgaatgaa
ttggataaattcggattggcagagagcctgttggagtcaaaagaaggttgccaaaagatt
ctcagagttttagatccattagtaccaacagggtcagaaaatttaaaaagcctttttaat
accgtctgcgtcatttggtgcttgcacgcagaagagaaagtgaaagatactgaggaagca
aagaaactagcacagagacatctagtggcagaaactggaactgcagagaaaatgccaaat
acaagtagaccaacagcaccacctagtgggaaaagaggaaactaccccgtgcaacaagcg
ggtggcaactatgtccatgtgccactgagcccccgaactctaaatgcatgggtaaaatta
gtggaggaaaagaagttcggggcagaagtagtgccaggatttcaggcactctcagaaggc
tgcacgccctatgatattaatcaaatgcttaattgtgtgggcgatcaccaagcagctatg
caaataatcagagagattattaatgaagaagcagcagactgggattcgcagcacccaata
ccaggccccttaccagcaggacagctcagagacccaagagggtctgacatagcaggaaca
acaagcacagtagatgaacagatccagtggatgtataggccacaaaatcccgtaccggta
gggaacatctacagaagatggatccaaatagggctgcaaaagtgtgtcagaaagtacaac
ccaactaacatcttagacataaaacagggaccaaaagaaccgttccaaagctatgtagac
aggttctacaaaagcttgagggcagaacaaacagacccagcagtaaaaaattggatgacc
caaacgctgctaatacagaatgccaacccagactgcaagttagtactaaaaggactgggg
atgaatcccaccctagaagagatgctaaccgcctgccagggggtaggcggaccaggccag
aaagccaggctaatggctgaagccctaaaagaggctatgggaccaagccctatcccattt
gcagcagcccaacaaagaaaggcaattaggtattggaactgtggaaaggagggacactcg
gcaagacagtgccgagcacctagaagacagggctgctggaagtgtggcaagccaggacac
atcatggcaaactgcccggaaagacaggcaggtttttttagggttgggcccacggggaaa
gaagcctcgcaacttccccgtgacccaagcccctcaggggctgataccaacagcacctcc
ggcagatccagcagcggaactgttggagagatatatgcagcaagggagaaagcagaggga
gcagagggagagaccatacaaagaggtgacggaggacttgctgcacctcgagcagagaga
gacacctcacagagaggagacagaggacttgctgcacctcaattctctctttggaaaaga
ccagtagtcacagcgtacatcgaggatcagccggtagaagtcttactagacacaggggct
gatgactcaatagtagcaggaatagaattaggggacaattacactccaaaaatagtaggg
ggaatagggggatttataaacaccaaagaatacaaaaatgtagaaataaaagtactaaat
aaaagagtaagagccaccataatgacaggagataccccaatcaacatctttggcagaaat
attctgacagccttaggcatgtcattaaatttaccagttgccaagatagagccaataaaa
gtaacattgaagccagggaaagatggaccaaggctgaaacaatggcccctaacaaaagag
aaaatagaagcactaaaagagatctgtgaaaaaatggaaaaagagggccagctagaagag
gcacctccaactaatccttataatacccccacatttgcaattaagaaaaaggacaagaac
aaatggaggatgctgatagattttagagaactaaataaggtgactcaagatttcacagaa
attcagctaggaattccacacccggcaggactagccaaaaagaaaaggatctctatatta
gatgtaggggatgcctatttttccataccactacatgaagattttaggcagtatactgca
tttaccctaccagcagtaaacaatatggaaccaggaaaaagatatatatataaagtcttg
ccacaaggatggaagggatcaccagcaatttttcaatacacaatgaggcaagtcttagaa
cctttcagaaaagcaaacccagatgtcattctcatccagtacatggatgatatcttaata
gctagtgacaggacaggtttagagcatgacaaagtggtcctgcagctaaaagaacttcta
aatggcctagggttttctactccagatgagaagttccaaaaagaccctccatttcaatgg
atgggctgtgaactatggccaactaaatggaagctgcagaaactacaactgccccagaaa
gacatatggacagtcaatgacatccaaaagctagtgggagtcttaaattgggcggcacaa
atctattcaggaataaaaaccaaacacttatgtagactaattagaggaaaaatgacactc
acagaagaagtgcagtggacagaactagcagaagcagagctagaagaaaacaaaattatc
ttgagccaggaacaagaaggatattattaccaagaagaaaaagaattagaggcaacaatc
caaaaaagccaaggacatcaatggacatacaaaatacaccaggaagagaaaatcctaaaa
gtaggaaagtatgcaaagataaaaaatacccataccaatggggtcagattactagcacag
gtagttcagaaaataggaaaagaggcactagtcatttggggacggataccaaaatttcac
ctgccagtggagagagagacctgggagcagtggtgggataactactggcaagtgacatgg
atcccagagtgggactttgtatctaccccaccactggtcaggttaacatttaacctagta
ggagatcctataccaggcgcagagaccttctacacagatggatcatgcaatagacagtca
aaagagggaaaagcaggatatgtaacagatagaggaaaagacaaagtaaaagtattagaa
caaactaccaatcagcaggcagaattagaagtctttcggatggcactggcagactcaggc
ccaaaggttaatatcatagtagattcacagtatgtaatggggatagtagcaggccagcca
acagagtcagaaaatagaatagtgaaccagatcatagaagaaatgataaagaaggaagca
gtctatgttgcatgggtcccagcccataaaggcataggaggaaaccaggaagtagaccat
ttagtaagtcaaggcatcagacaagtattattcctggaaaagatagagcccgctcaagag
gaacatgaaaaatatcatagcattataaaagaactaacccataaatttggaatacccctt
ctagtagcaagacagatagtaaactcatgtgcccaatgccaacagaaaggagaagccata
catgggcaagtaaatgcagaaataggcgtttggcaaatggactacacacacttagaagga
aaaatcattatagtagcagtacatgttgcaagtggattcatagaagcagaagtcatccca
caggaatcaggaaggcagacagcactcttcctattaaaactggccagtaggtggccaata
acgcacttgcacacagacaatggccccaacttcacttcacaggaagtgaagatggtggca
tggtgggtaggtatagaacaatcctttggagtaccttacaacccacaaagccagggagta
gtagaagcaatgaatcaccacctaaagaatcagataagtagaattagagaacaggcaaat
acaatagaaacaatagtactgatggcagttcattgcatgaattttaaaagaaggggagga
ataggggatatgaccccagcagaaagactaatcaacatgattaccacagaacaagaaata
caattcctccaaagaaaaaattcaaattttaaaaatttccaggtctattacagagaaggc
agagatcagctgtggaaaggacctggtgaactactgtggaagggagaaggagcagtcata
gtcaaggtagggacagacataaaagtagtaccaagaaggaaggccaagattatcagggac
tatggaggaagacaggaactggatagtagtccccacctggagggtgccagggaggatgga
gaaatggcatgcccttgtcaagtacctgaaatacagaacaaaagacctagaggaggtgcg
ctatgttccccaccacaaggtgggatgggcatggtggacttgcagcagggtaatattccc
actacaaggaaaaagtcatctagaaatacaggcatattggaacctaacaccagaaaaagg
atggctctcctctcatgcagtaagattaacctggtatacagaaaagttctggacagatgt
taccccagactgtgcagacatcctaatacatag
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integrated database retrieval system
