KEGG   Viruses: 1490009
Entry
1490009           CDS       T40000                                 
Symbol
SIVgp1
Name
(RefSeq) Simian immunodeficiency virus; Gag-Pol
  KO
K22951  HIV Gag or Gag-Pol polyprotein
Virus
11723  Simian immunodeficiency virus
SSDB
Motif
Pfam: Gag_p17 RVT_connect RVT_1 Gag_p24_C RNase_H RVP IN_DBD_C rve RVT_thumb zf-CCHC Integrase_Zn Asp_protease_2 gag-asp_proteas zf-CCHC_6 zf-CCHC_4 rve_3 RVT_3 zf-CCHC_3
Other DBs
NCBI-GeneID: 1490009
NCBI-ProteinID: NP_687035
RS: NC_001549
LinkDB
Position
NC_001549:join(897..2197,2197..5314)
AA seq 1472 aa
MGGGHSALSGRSLDTFEKIRLRPNGKKKYQIKHLIWAGKEMERFGLHEKLLETKEGCQKI
IEVLTPLEPTGSEGLKALFNLCCVIWCIHAEQKVKDTEEAVVTVKQHYHLVDKNEKAAKK
KNETTAPPGGESRNYPVVNQNNAWVHQPLSPRTLNAWVKCVEEKRWGAEVVPMFQALSEG
CLSYDVNQMLNVIGDHQGALQILKEVINEEAAEWDRTHRPPAGPLPAGQLRDPTGSDIAG
TTSSIQEQIEWTFNANPRIDVGAQYRKWVILGLQKVVQMYNPQKVLDIRQGPKEPFQDYV
DRFYKALRAEQAPQDVKNWMTQTLLIQNANPDCKLILKGLGMNPTLEEMLIACQGVGGPQ
HKAKLMVEMMSNGQNMVQVGPQKKGPRGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIG
HMAKDCKNGQANFFRVWPLGRSETKKFCAIQRRHSWSGTNSPPNGNSLRSSKEAPPAVCR
EGTAPERGERTDKETEGERSGGCFLELPLWRRPMKRVIIEGTPVQALLDTGADDTIIQEK
DLHFPPHKPWRSKVVGGIGGGIHVKEYQGVQVQLEDKIITGSILIGSTPINIIGRNILAQ
AGMKLVMGVLSSQIEETKVQLKEGKDGPKLKQWPLSREKIEALTEICKQMEEEGKLSRIG
GENPYNTPVFAIKKKDKTQWRMLVDFRELNKATQDFFEVQLGIPHPAGLQKKKQITVIDI
GDAYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQGWKGSPTIFQNTAANILEEI
KRHTPGLEIVQYMDDLWLASDHDETRHNQQVDIVRKMLLEKGLETPDKKVQREPPWEWMG
YKLHPNKWTINKIELPPLEGEWTVNKIQKVVGVLNWASQIYPGIKTKHTCAMLRGKKNLL
EEIVWTEEAEAEYKNNQGIVQETQEGTYYDPLKELIATVQKQGEGQWTYQFTQEGAVLKV
GRYAKQRETHTNDLRTLAHLVQKICKEALTIWGRLPRVQLPVDKKTWDMWWQDYWQVSWI
PEWEFVSTPLLVKLWYSLVKEPIKGEDVYYVDGAASKVTKLGKAGYLSERGKSRIRELEN
TTNQQAELTAVKMALEDSGENVNIVTDSQYVMNILTACPQESNSPLVEQIIQALMKKRQV
YLQWVPAHKGIGGNTEIDKLVSKGIRQILFLDRIEEAQDDHAKYHNNWRSMVQEFGLPNI
VAKEIVAACPKCQIRGEPKHGQVDASIETWQMDCTHLEGKVIIVAVHVASGFIEAEVIPR
ETGKETAHFLLKLLARWPVKHLHTDNGPNFTSQNVAAVCWWGNIEHTTGIPYNPQSQGSV
ESMNRQLKEIISQIRDDCERLETAVQMATHIHNFKRKGGIGGISSAERLVNMLTTQLELN
TLQNQIQKILNFKVYYREGRDPVWKGPARLIWKGEGAVVIKEGEDIKVVPRRKAKIIKDY
GERKTMDSEGSMEGVREANKQMEGDSDLQDQE
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgggcgggggtcactcagcactgtcagggagaagcctcgacacgttcgagaagattagg
ctacgtccgaacgggaaaaagaagtaccaaattaaacatttaatatgggcaggaaaagaa
atggaacgatttgggttacatgagaaacttttagaaacaaaagaaggctgtcaaaaaatc
atagaagttttaaccccgttggaaccgacaggctccgaggggctaaaagctctgtttaat
ttgtgctgcgtcatttggtgcattcacgcagaacagaaagtgaaagacacagaggaagct
gtagtaacagttaagcaacactaccatctagtggacaaaaatgagaaagcagctaaaaag
aaaaatgagacaacagcgccacctggtggcgaatcaagaaattacccagtagtaaatcag
aataatgcctgggtacaccagcctttgtctccgcgcacgttaaatgcgtgggtcaaatgc
gtggaggaaaaaaggtggggagcagaagtagtccccatgttccaagcactctcagaggga
tgtctctcctatgatgtaaatcagatgctcaatgtaataggagaccatcagggggcatta
caaattcttaaggaagtcattaatgaagaagcagcagagtgggacaggacacacagacca
ccagctggcccgttaccagcagggcagctaagagacccgacagggtcagatatagcagga
actaccagctcaattcaggaacaaatagagtggaccttcaatgccaatccaagaatagac
gtaggggcacaatacagaaaatgggttattttgggcttacaaaaggtagtgcagatgtac
aatccccaaaaggtcctagacattcgacagggacctaaagaacccttccaggactatgta
gacagattctataaagccctgagagcagaacaagcaccacaggatgttaaaaattggatg
acacaaactttgcttatccagaatgccaatccggattgtaaattgattctgaaaggattg
ggaatgaatccaaccttggaggaaatgctaatagcttgccagggagtaggagggccacaa
cataaggctaagctaatggtagaaatgatgagtaatggacagaatatggtccaagtggga
cctcagaaaaagggcccccgagggccgctaaaatgctttaattgtggcaaatttggacat
atgcaaagggaatgcaaggcaccaagacagatcaaatgctttaagtgcggcaaaattggc
catatggcaaaagactgcaagaatggacaggcaaatttttttagggtatggccattgggg
aggagcgaaaccaagaaattttgtgcaatacagaggagacacagttggtctggaaccaac
agcccccccaatggaaacagcttacgatccagcaaagaagctcctccagcagtatgcaga
gaagggacagcgcctgagagaggagagagaacagacaaggaaacagaaggagaaagaagt
ggaggatgtttccttgagctccctctttggaggagaccaatgaaacgagtcatcatagaa
ggaacgccagtgcaagccttgttagatacaggagcagatgacactataattcaagaaaag
gacttgcactttcccccacataaaccatggcgttccaaggtagtaggaggtataggagga
gggattcatgtcaaagaatatcagggggtacaagtacaattggaggataaaatcatcacc
ggctcaattctaataggaagtacaccaatcaatattataggaagaaatattttagctcag
gcaggcatgaaattagttatgggagttctatctagtcagattgaggaaacaaaagtacaa
ctaaaagaagggaaagatggacctaaattgaaacaatggcccttatcaagagaaaaaatt
gaagctttaacagaaatatgcaaacaaatggaagaggagggaaaattatctaggatagga
ggagaaaatccttataatacaccagtgtttgccataaagaaaaaggataaaacacaatgg
agaatgcttgtagatttcagggaactaaacaaagctactcaagacttttttgaggttcag
ctgggaattcctcacccagcgggccttcagaaaaagaagcaaatcacagtaatagacata
ggggatgcctattattcaataccattatgcaaggaattcagaaaatatacagcatttacc
atcccctcagtaaataatacagggccagggataaggtatcagttcaattgtctgcctcag
ggatggaaaggatctcctacaattttccagaatacggcagcaaacattttagaggagatc
aaaaggcacactcctgggttagaaattgtccaatacatggacgatttgtggttggcgtca
gaccatgatgagactagacataatcaacaggtagacatagtaagaaagatgctgctagaa
aaaggtctagaaaccccagacaagaaagtccaaagagaaccgccatgggaatggatgggg
tataaattgcatccgaataaatggaccattaacaaaatagaattaccccccttagaagga
gaatggacagtaaacaaaatacagaaggtagtaggagttctaaattgggcaagtcaaatt
tatccaggaattaaaaccaaacatacctgtgccatgttgagagggaaaaagaacctccta
gaagaaatagtatggacagaagaggcagaggcagaatataagaacaatcaagggatagtg
caggaaacacaagaaggaacatactatgaccctctcaaagaattaatagcaacagttcaa
aagcaaggagaagggcaatggacataccaattcacccaagaaggggcagtattaaaggtg
ggaagatatgccaagcaaagagaaactcatactaatgatctaaggactctagcacacctt
gtccaaaaaatctgtaaggaagcacttaccatttggggaagacttccacgagtacaactc
ccagtagacaagaaaacatgggatatgtggtggcaggactattggcaagtatcctggata
ccagaatgggagtttgttagcacaccactcctagtaaaactgtggtattccttagtaaaa
gaaccaatcaaaggagaagatgtttattatgtggatggggcagcatccaaagtgaccaaa
ttaggtaaggcaggatatctgtcagagagaggaaaaagtagaattagggaattagaaaac
accactaaccaacaagcagaattaacagcagttaagatggcattggaggacagtggagaa
aatgtaaatatagtcacagattctcaatatgtaatgaacatcttgacagcatgtccacag
gaaagtaactcacccttagtggaacagataatacaagccctaatgaaaaagaggcaggtc
tacttacaatgggtaccagctcataaggggataggaggcaatacagaaatagataaatta
gtaagcaaaggaataagacagatcctcttcttagatagaatagaagaagcacaagatgac
catgcaaagtaccataacaattggagaagtatggtacaggaatttggattacctaatata
gtagcaaaagagatagtagcggcatgtcccaaatgccaaataagaggagaacctaagcat
ggacaggtagacgcctccattgaaacttggcagatggactgcacccatttagaaggaaaa
gttataatagtagcagtacatgtagccagtggattcatagaagcagaggtgatcccaaga
gaaactgggaaggagacagcacactttctgctgaaactgttagcaagatggccagtgaaa
catctacacactgataatggcccaaactttacctctcagaatgtggcagcggtgtgctgg
tggggtaatatagagcacaccactggaataccttataacccacagtcacagggtagtgta
gaaagcatgaacagacagctcaaggaaatcatctctcaaataagagatgattgtgagaga
ttggagacagcagtgcaaatggctacgcatatccacaattttaaaagaaagggaggaata
gggggtatctctagtgcagaaagattggttaatatgctaacaacacaactagaactaaat
actctacaaaaccaaatccaaaaaattttgaattttaaggtctactacagagaaggtaga
gatccagtgtggaaaggaccagcgcgactcatctggaaaggagaaggcgcggtggtaatt
aaagagggggaagacatcaaggtagtccccaggagaaaggctaagattatcaaagattat
ggagagagaaaaacaatggatagtgagggtagtatggagggtgtcagagaggcaaataag
cagatggagggggatagtgacttacaagatcaggaataa

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