Viruses: 1491968
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Entry
1491968 CDS
T40000
Symbol
RHDVgp1
Name
(RefSeq) Rabbit hemorrhagic disease virus; polyprotein
Virus
11976
Rabbit hemorrhagic disease virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Calici_coat
RdRP_1
Peptidase_C24
VPg
RNA_helicase
Rhv
Zeta_toxin
Peptidase_C37
NACHT
RuvB_N
AAA
DcuC
TsaE
Motif
Other DBs
NCBI-GeneID:
1491968
NCBI-ProteinID:
NP_062875
RS:
NC_001543
UniProt:
P27410
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_001543:10..7044
Genome browser
AA seq
2344 aa
AA seq
DB search
MAAMSRLTGMTTAILPEKKPLDFFLDLRDKTPPCCIRATGRLAWPVFPGQNGKEGPLETC
NKCGKWLNGFGNFGLEDLGDVCLCSIAQQKHKFGPVCLCNRVYIHDCGRWRRRSRFLKHY
KALNKVIPCAYQFDESFPTPIFEGEVDDLFVELGAPTSMGFMDKKLLKKGKKLMDKFVDV
DEPCLTSRDTSLLDSIASDNTIRAKLEEEYGVEMVQAARDRKDFMKNLRLALDNRPANPV
TWYTKLGNITEKGKQWAKKVVYGARKVTDPLKTLASILLVGLHNVIAVDTTVMLSTFKPV
NLLAILMDWNNDLTGFITTLVRLLELYGVVQATVNLIIEGVKSFWDKVVCATDRCFDLLK
RLFDTFEDSVPTGPTAGCLIFMAFVFSTVVGYLPNNSVITTFMKGAGKLTTFAGVVGAIR
TLWITINQHMVAKDLTSVQQKVMTVVKMANEAATLDQLEIVSCLCSDLETTLTNRCTLPS
YNQHLGILNASQKVISDLHTMVLGKINMTKQRPQPVAVIFKGAPGIGKTYLVHRIARDLG
CQHPSTINFGLDHFDSYTGEEVAIADEFNTCGDGESWVELFIQMVNTNPCPLNCDKAENK
NKVFNSKYLLCTTNSNMILNATHPRAGAFYRRVMIVEARNKAVESWQATRHGSKPGKSCY
SKDMSHLTFQVYPHNMPAPGFVFVGDKLVKSQVTPREYKYSELLDLIKSEHPDVASFEGA
NKFNFVYPDAQYDQALLMWKQYFVMYGCVARLAKNFVDDIPYNQVHISRASDPKIEGCVE
YQCKFQHLWRMVPQFVLGCVNMTNQLGTPLTQQQLDRITNGVEGVTVTTVNNILPFHSQT
TLINPSFIKLIWAVRKHLKGLSGVTKVAQFIWRVMTNPVDAYGTLVRTLTGAATFSDDPV
STTIICSNCTIQLHSCGGLLVRYSRDPVPVASDNVDRGDQGVDVFTDPNLISGFSWRQIA
HLFVEVISHLCANHLVNLATMAALGAVATKAFQGVKGKTKRGRGARVNLGNDEYDEWQAA
RREFVNAHDMTAEEYLAMKNKAAMGSDDQDSIMFRSWWTRRQLRPEEDQVTIVGRSGVRN
EVIRTRVRQTPRGPKTLDDGGFYDNDYEGLPGFMRHNGSGWMIHIGNGLYISNTHTARSS
CSEIVTCSPTTDLCLVKGESIRSVAQIAEGTPVCDWKKSPISTYGIKKTLSDSTKIDVLA
YDGCTQTTHGDCGLPLYDSSGKIVAIHTGKLLGFSKMCTLIDLTITKGVYETSNFFCGEP
IDYRGITAHRLVGAEPRPPVSGTRYAKVPGVPDEYKTGYRPANLGRSDPDSDKSLMNIAV
KNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTKGERQANLNFKAAFNTLDLSTSCGPF
VPGKKIDHVKDGVMDQVLAKHLYKCWSVANSGKALHHIYACGLKDELRPLDKVKEGKKRL
LWGCDVGVAVCAAAVFHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL
DYSKWDSTMSPCVVRLAIDILADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSG
MPFTSVINSICHWLLWSAAVYKSCAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLP
AIIENLRDYGLSPTAADKTEFIDVCPLNKISFLKRTFELTDIGWVSKLDKSSILRQLEWS
KTTSRHMVIEETYDLAKEERGVQLEELQVAAAAHGQEFFNFVCRELERQQAYTQFSVYSY
DAARKILADRKRVVSVVPDDEFVNVMEGKARAAPQGEAAGTATTASVPGTTTDGMDPGVV
ATTSVITAENSSASIATAGIGGPPQQVDQQETWRTNFYYNDVFTWSVADAPGSILYTVQH
SPQNNPFTAVLSQMYAGWAGGMQFRFIVAGSGVFGGRLVRAVIPPGIEIGPGLEVRQFPH
VVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVLSVYNNLINPFGGSTSAIQVTVET
RPSEDFEFVMIRAPSSKTVDSISPAGLLTTPVLTGVGNDNRWNGQIVGLQPVPGGFSTCN
RHWNLNGSTYGWSSPRFGDIDHRRGSASYSGSNATNVLQFWYANAGSAIDNPISQVAPDG
FPDMSFVPFNGPGIPAAGWVGFGAIWNSNSGAPNVTTVQAYELGFATGAPGNLQPTTNTS
GAQTVAKSIYAVVTGTAQNPAGLFVMASGIISTPNASAITYTPQPDRIVTTPGTPAAAPV
GKNTPIMFASVVRRTGDVNATAGSANGTQYGTGSQPLPVTIGLSLNNYSSALMPGQFFVW
QLTFASGFMEIGLSVDGYFYAGTGASTTLIDLTELIDVRPVGPRPSKSTLVFNLGGTANG
FSYV
NT seq
7035 nt
NT seq
+upstream
nt +downstream
nt
atggcggctatgtcgcgccttactggcatgactactgctattttaccagaaaagaaaccc
ttggatttcttcctggacctcagggacaagacccctccctgttgtattcgggcaaccgga
agactggcttggccagtttttccgggacaaaacggaaaagaaggacctctagagacatgt
aacaagtgtggcaaatggcttaacggatttggtaattttggactagaggatcttggtgat
gtttgcttgtgttccatagcccaacagaaacacaagtttggacctgtctgcctgtgcaat
cgtgtctacatacacgactgcggtcgttggcggcgccgcagtcgtttcttgaagcactac
aaggcattaaataaggttattccctgtgcttaccagttcgacgaaagttttcccacccct
atttttgaaggggaggttgatgacttatttgttgagcttggggcaccaaccagcatgggt
tttatggacaagaaattactcaaaaagggtaagaagctgatggacaagtttgttgacgtt
gacgaaccctgtttgacatcaagagacaccagcctgctcgactccatagcttcggataac
accatacgtgcgaagctggaagaggagtatggtgttgaaatggtgcaggcagcgcgtgac
aggaaagacttcatgaagaacctcaggctcgccttggacaatcggcccgcgaaccctgtg
acctggtacactaaactcggcaatataactgaaaaagggaagcagtgggcaaagaaggtt
gtttatggtgcccgcaaggtgactgaccccctgaaaacgttggcttcaatcttgctagtt
ggcctccacaacgtcattgccgtggacacaacagtcatgttatcaacgttcaagcccgtg
aacctgctagcgatcctcatggactggaacaatgacttaactgggtttatcaccacactt
gtgaggctgctggagctgtatggtgtagtacaggcaactgtcaacttgatcattgaaggt
gtgaagagtttctgggacaaggtggtctgtgcaacggaccgctgctttgacttgctcaag
aggctgtttgacacatttgaggactccgtccccacggggccaactgctggctgcctcatc
ttcatggcttttgtcttttccactgttgtcgggtacctgcccaacaacagtgtaatcaca
actttcatgaagggtgctggcaagctcacaacctttgcaggggttgttggtgctatccga
acattatggatcactatcaaccaacacatggtggccaaggacctcaccagtgtacagcaa
aaggttatgacagttgtgaaaatggctaatgaggcggcaacgctggaccagctcgagatc
gttagctgcctctgctcagacttggaaaccacactaacaaacaggtgcaccctgccatca
tacaaccaacatctcgggatcttaaatgcatcccagaaggttataagtgacctacacacc
atggtccttgggaagatcaacatgacgaagcagagaccacagcccgtggctgtcattttc
aagggagccccgggtattggcaaaacctacttagtccacaggattgcgcgggacttgggc
tgccagcaccctagtacaataaattttggtcttgaccacttcgactcgtacacaggtgag
gaggttgctattgcggatgagttcaacacttgtggcgacggagagagttgggttgagctg
tttatccagatggtcaacacaaacccgtgcccactcaactgtgacaaggctgagaacaag
aacaaagttttcaactcaaagtacctactgtgcacaacaaattccaacatgatactaaat
gcgacccaccctcgtgctggcgcattttatagaagggttatgattgttgaagcacgtaac
aaggcagttgaaagctggcaagccaccaggcatggctccaaaccggggaaatcctgctac
agcaaggatatgtcgcacctaaccttccaggtttacccccataacatgcctgctccaggg
tttgtgtttgttggtgacaaactggtgaagtctcaggtcacaccaagggagtacaagtac
agtgagctcttggaccttatcaaaagtgagcaccctgacgtggcctcattcgagggtgcc
aacaaatttaactttgtctacccagacgcccaatacgaccaggcgctcctcatgtggaaa
cagtactttgttatgtatggttgtgtggcaagacttgcgaagaatttcgtagatgacatc
ccatacaatcaagttcacatatcgagggcgagcgacccaaagattgaggggtgtgtggag
taccagtgtaagttccaacatctttggcgcatggttccccagtttgttttggggtgtgtg
aatatgacaaaccagcttggcacccctttgacccaacagcaactagacaggatcaccaac
ggggtcgaaggcgtcactgttacaacggtgaacaacatcctaccgttccactcacagacc
acgctcatcaacccctctttcatcaaactgatttgggcagttagaaaacacctcaaagga
ctcagcggtgtgaccaaggtggctcaattcatttggcgtgtcatgactaatccagtggac
gcctatggaaccctggtcaggaccctcaccggggctgctactttttcagacgacccggtt
tccacaacaatcatctgttccaactgcacaatccaactccactcctgcggtggactactt
gtcaggtactcaagggaccctgtccccgtggcatcagacaacgttgaccgcggtgaccaa
ggcgttgacgtgttcaccgaccccaacctcatctctgggttcagttggaggcagattgcg
cacctatttgttgaggtgatctcacacttgtgtgcaaaccaccttgtcaaccttgcgacc
atggcagccctgggtgcagttgcaacgaaagcttttcagggcgtgaaaggcaagacaaaa
cgtggtcgtggtgcaagagtgaacttgggcaacgacgagtacgatgaatggcaagctgca
cgtagagaattcgtcaacgcacacgacatgactgcagaggagtatcttgcaatgaagaac
aaagctgccatgggaagtgacgaccaagactccatcatgttcaggagctggtggacccgg
agacaactgagacctgaagaggaccaggtcaccatcgttggcaggagtggagtgagaaat
gaagtcatccgcaccagagttagacaaactccaagagggccaaagacgctagacgatggt
ggcttttatgacaatgactatgagggtttacctgggttcatgagacacaatggcagtggc
tggatgatccacataggcaacgggttgtacatttccaacactcataccgccaggtcaagt
tgctcagaaattgtcacatgctcacccaccactgacctgtgcctcgtcaagggtgagtca
atccgcagtgttgctcagatcgctgaaggtaccccagtttgtgactggaagaagtctcca
atctcaacctatggcatcaagaagacattgtcagactccacaaagattgacgtgctggcg
tatgacggttgcacacagaccacccacggggactgtgggctgccgttgtatgactccagc
gggaagattgttgccatacacactggcaagttgttggggttttcaaagatgtgcacattg
attgatctcaccattacaaagggagtttatgaaacgtcaaacttcttctgtggtgagcca
attgactatagaggcatcactgcacataggctcgtcggtgcggaacccagacctcccgtt
agtggaaccaggtatgctaaggtcccgggtgtgcctgatgagtataagaccgggtacagg
ccagccaaccttgggcgtagtgacccagacagtgacaagtcactcatgaacattgcggtg
aagaacttacaggtgtaccaacaagagccaaagcttgacaaggtggatgagtttattgag
cgagcggctgccgacgttttgggctacttgcgcttcctaaccaagggggagcgccaggca
aacctgaactttaaagctgcgttcaacactctagacctgtcaacctcttgcgggcccttt
gttccaggaaagaagattgaccatgtgaaagatggagtgatggatcaagtcctagctaaa
cacctttacaagtgctggagcgttgccaactccggcaaagcccttcaccacatatacgcg
tgtgggttgaaggatgaacttagacctcttgacaaggtgaaggagggaaagaagaggctg
ttgtggggctgtgacgttggtgtcgccgtgtgtgctgccgctgttttccacaacatatgc
tacaaactaaagatggtcgcgcggtttggccccattgcagttggcgttgacatgacatct
cgtgacgttgacgtcatcatcaacaacctcacctccaaggccagcgacttcttgtgcttg
gactactcaaagtgggactccaccatgtcaccgtgtgttgtcaggctagccattgatatc
ttagcagattgttgtgagcaaacggaactcactaaaagtgtcgttctcacactgaaatcc
caccccatgaccatacttgacgccatgatcgtgcaaactaagcgtggccttccgagtggc
atgcccttcacctcggtcatcaactccatttgtcattggttgctttggtccgcagccgtt
tacaagtcttgtgctgaaattggcttacactgctccaacctgtacgaggacgccccattc
tacacgtatggcgatgatggcgtgtatgccatgactccgatgatggtgagtcttttgcct
gctataatagaaaatttgagagactacggtttgtcacccaccgccgcagacaaaacagag
ttcatagatgtttgcccactcaacaagatctcgttcttgaagcgcaccttcgagctcacg
gacattgggtgggtgtcaaaactagacaaatccagcatactcagacagttagagtggagc
aaaacaacatctagacacatggtgattgaagaaacatacgacttggccaaagaagagcgt
ggtgtgcagctagaggaactgcaagttgctgccgctgcacatggccaggagtttttcaac
tttgtttgcagggagctcgagcgacaacaggcatacacccagttcagtgtttacagctac
gatgctgctaggaagatacttgcagatcgtaagagagtcgtctcggtagtacctgacgac
gaatttgtgaatgttatggagggcaaagcccgtgcagcgccgcaaggcgaagcagcgggc
actgccaccacagcatcagttcccggaaccacgactgatggcatggatcctggcgttgtg
gccactaccagcgtgatcactgcagaaaattcatccgcatcgattgcaacagcagggatt
ggcggaccaccccaacaggtggaccaacaagagacatggagaacaaatttttattacaat
gatgttttcacttggtcagtcgcggacgcccctggcagcatactttacaccgtccaacat
tctccacaaaacaacccattcacagccgtgctgagccagatgtacgctggctgggctggt
ggcatgcagtttcgcttcatagttgccgggtcaggtgtgtttggtgggcgactggtccgg
gctgtgataccaccaggcatcgagattggaccagggttggaggttaggcagtttcctcat
gttgtcatcgatgcccgttcactcgaacctgttaccatcaccatgccagacttgcgtccc
aacatgtaccatccaactggtgaccctggccttgttcccacactagtccttagtgtttac
aacaaccttatcaacccgtttggtgggtccactagtgcaatccaggtgacagtggaaaca
aggccaagtgaagactttgagttcgtgatgattcgagccccctccagcaagactgttgac
tcaatttcgcccgcaggcctcctcacgaccccagtccttactggggttggcaatgacaac
aggtggaacggccaaatagtgggactgcaaccagtacctggagggttttctacgtgcaac
aggcattggaacttgaatggcagcacatatggctggtcaagccctcggtttggcgacatt
gaccatcgaagaggcagtgcaagttactctgggagcaacgcaaccaacgtgcttcagttt
tggtatgccaatgctgggtctgcaatcgacaaccccatttcccaggttgcaccagacggc
tttcctgacatgtcgttcgtgccctttaacggccccggcattccagctgcggggtgggtt
ggatttggtgcaatctggaacagtaacagcggtgcccccaacgttacgactgtgcaggcc
tatgagttaggttttgccactggggcaccaggcaacctccagcccaccaccaacacttca
ggtgcacagactgtcgccaagtccatttatgccgtggtgactggcacagcccaaaaccca
gccggattgtttgtgatggcctcgggtattatctccaccccaaatgccagcgccatcaca
tacacgcctcaaccagacagaattgtaaccacacccggcactcctgccgctgcacctgtg
ggtaagaacacacccatcatgtttgcgtctgtcgtcaggcgcaccggtgacgtcaacgcc
acagctgggtcagccaacgggacccagtacggcacaggctcccaaccactgccagtgaca
attggactttcgctcaacaactactcgtcagcacttatgcccggacagtttttcgtttgg
cagttaacctttgcatctggtttcatggagataggtttaagtgtggacgggtatttttat
gcaggaacaggggcctcaaccacactcattgacctgactgaactcattgacgtacgccct
gtgggacccaggccgtccaaaagcacactcgtgttcaacctggggggcacagccaatggc
ttttcttatgtctga
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integrated database retrieval system
