KEGG   Viruses: 1494001
Entry
1494001           CDS       T40000                                 
Symbol
ClYMVgp1
Name
(RefSeq) Clover yellow mosaic virus; replicase
  KO
K26615  Alphaflexiviridae RNA-directed RNA polymerase
Virus
12177  Clover yellow mosaic virus
SSDB
Motif
Pfam: Vmethyltransf Viral_helicase1 RdRP_2 2OG-FeII_Oxy_2 2OG-FeII_Oxy AAA_22 AAA_14 AAA_33 TetR_C_19
Other DBs
NCBI-GeneID: 1494001
NCBI-ProteinID: NP_077079
RS: NC_001753
LinkDB
Position
NC_001753:95..5107
AA seq 1670 aa
MARVRASLSQFTDPSQKILIQSDQYENVKKTLGTYKLTNPYAHSESTADLLEDLGIATNP
FAAEPHTHGAAKAIENDLYYIASTRMTKEEPVTFMFMKRAKLQYFRRGPQQNDTFINQIV
EPKDVARYDEDTLHSTIPTIETKTVFIGDTLHFLPPSFLTKLFARNPKIQTVLATMVLPT
EALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLRFGHIIDG
KVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIKKT
LVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIAKTSAVTSF
DSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVLPVKTHDWR
RMGVADSNDPFTYPIEEEKKNPKWIHDFVSHFFGVNKAAQEDSPPEDNNELHYQHYLKLL
EAQTLTAEEEAALQVLNRVIEEGESQEEDDKPGTDVPEQGNPQNLAQTQHPPAIQKNTIS
PEEMSPTQLLSISGLCSMSMDYAALEREQAAWKAAEEEIQRQQKPQLAVPPPPQTIIKAQ
ELAAQIKQTELIPTKEPIHELTQPALTEDLELDLEALQHITEEVSSSSVNRKTTEVEGLQ
QLSSNCPTGRLEEPVTIQTVLTDILKGRKAAFHSRGGEPYSYTGFTHQAQPWNQTLDQII
QSAGFQPTDFDHCLIQRYQNGYHLRPHSDNEPCYPEANPILTINTEGQAEFIISRGEVKT
SYRLGPNSWLLMPSGLQETHKHEVIAMSEGRTSLTFRSTKPLTLPKRIIEPDTKQETPEL
PWKLWLGVLNSLNFKGNQRILDGNGQLIFPIKDNKSLPKYEGRLPEPHLLEQLKEASRYP
CPYRIDHKQGRAFASDVKNNRTGSLTTKQPDEWKEAFTRMAESPEQRTVALTVIHGAGGS
GKSQLLQRYLMENPECKINTILPTNELRNDWLTKLPKMPLTAIQTFERALISPQKPVVIF
DDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTFHESNEQAMINHLSKSTEHFSQFSRY
YINATHRNKQDLARFLGVYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSYTEMGYKTST
YAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRAVHAVHFINTSATSSAFWDKLNSTPY
LKTFLSTLREDRLREEGPKPETPEEPKPATTHFPVENENLSLEDKVEELLEKHERELYSS
DHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANMEEFRMKKNVGDVLW
LNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFL
KSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYMRRIRQAFQPPNIQLNCEQTP
QQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQFEVLKAKHHNIPEAIIQGYIDIKTN
AKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRFHISDDTAQLYAGDDTAFSKIPIEKV
SFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITPLGLIKEPKKLQANLTLAIKQNKIKD
TVNSYSQDVALAYQHKDELYEIFDENQMRDHQTTVRTLVKFGGNEILANY
NT seq 5013 nt   +upstreamnt  +downstreamnt
atggcccgtgtacgagcatctctctcccaattcaccgacccatcacaaaaaattctcata
caaagcgaccaatatgaaaatgtaaagaaaacacttggtacatacaaactaaccaaccca
tacgcccactccgagtccaccgctgacttattagaggatttaggtatagcaactaaccca
ttcgctgcagaaccacacacacatggagctgctaaagctatagaaaacgacttatattac
atagcttcaaccagaatgactaaggaggaaccagtaaccttcatgttcatgaaaagagct
aaactgcaatacttccgtagaggcccccaacaaaatgacacattcataaatcaaattgtg
gagcccaaagacgtggcgagatacgacgaagacacccttcattccaccatccccactata
gagactaaaacagtctttataggtgacactctccacttcctcccaccatcatttctaacc
aaactcttcgctcgtaacccaaagatccaaacagtgttagctacgatggtgctacccacg
gaagcactatacggcctaacatctctatatccaaacgtgtactccctgtcataccataaa
ccctccaaattcaggagaaaagctctcttctcttatgcaccagggggacacaaaggagct
gaatatgtgcacgaactcaaacagatcgattggttgaggttcgggcacataatagatgga
aaggtatgcatcaccgcccaaaaactagaaactaaagcggccaaccatctgttcatttat
aagagaggtaagtacttcacaccggagatccgaaacttcaacacgcaaacgaagtacgta
actctaccaaaaatcttcctcccagcacagtttaaccacagagtgccgatcaagaaaacc
ctggtcatgcaactattcatgtacgtcaagaccgtctcagcggcaaaggagcgtgacata
tgggcaaagataagacagcttataaaaaccgaagacttgcaagaatattctcccacagaa
atagttcacctggtcaactactttctgttcatagcaaagacttcggcagtaacgagtttc
gactccatgctggacgggtcaatcataaagaagatattccgacctgtgctagcctggttc
aaaagtggctaccagagaatattcggcctctctgaattcaaccagctgctagaagccctc
tcttgggatgaaatcgatctgacactcgatgtactacccgtcaagacgcatgactggaga
aggatgggagtagcagatagcaatgaccccttcacctaccccatcgaggaggagaaaaag
aaccccaaatggattcacgacttcgtaagccatttcttcggagttaacaaagctgcgcaa
gaggactccccaccagaggacaacaatgagctgcattaccaacactacctgaagctcctt
gaggctcagaccctcacagcagaagaggaagcagcactccaagtcctgaacagagtaatt
gaagagggagagtcccaagaagaggacgacaaaccaggcactgacgtcccggagcaggga
aacccacaaaacctggctcaaacccaacacccccccgcaatccaaaagaacacaatttcc
ccagaggagatgagcccaactcagctactgtcaatctcaggtctctgctcaatgtcaatg
gactatgctgccctagaaagagagcaagcagcctggaaagcggccgaggaggagatccaa
cggcaacaaaaaccgcagctcgctgtcccgcccccaccacaaacaatcatcaaagcccaa
gagctggccgcccaaataaaacagacggagctcattcctacgaaggaaccaatccatgag
ctaactcaacccgcgttgacggaagacctagagctggatttggaagcactacaacacatc
actgaagaggtgtcgagctccagcgtcaacagaaaaacgactgaggttgagggactacaa
cagctatcctcaaactgccccaccggtagactagaagaacctgtaaccatccaaactgta
ctcaccgacatcctgaagggcagaaaagcagccttccacagccgaggaggtgaaccctac
tcctacactgggttcacccaccaagcccagccctggaatcaaaccctcgaccaaataatc
caatcagcaggcttccaaccaacagacttcgaccattgcctcatacagagataccaaaac
ggataccatctgaggcctcactccgacaatgaaccctgttacccagaagcaaaccccatc
ctgactatcaacactgagggtcaagcagagttcatcatttcgagaggagaagtcaaaacc
agctacagactgggacccaacagctggctcttgatgccctcgggactccaagagacccac
aagcacgaagtcatagccatgagcgagggcagaacatctctaaccttccggtcaacaaaa
cccttgaccctaccaaaacgcatcatagagccagacaccaaacaggagactccggaacta
ccctggaaactttggcttggagtactgaacagtttgaacttcaaagggaaccaaaggatt
ctcgacggcaacggccaactaatctttcccatcaaggacaacaaatccctgccaaagtat
gaaggacgcctcccggagccacacttgctagaacaactcaaagaggccagcaggtacccc
tgtccatacagaatcgaccacaaacaaggccgtgcctttgcttccgacgtcaaaaacaac
cggaccggttccctcaccacaaagcaaccagacgaatggaaggaggccttcaccaggatg
gcggaatccccagagcagagaactgtggccctaacagtaatccatggggcaggaggatcg
ggcaaatcacaactcctccaaaggtacttgatggagaacccagaatgcaagatcaacacc
atcctccccaccaacgaactccgcaatgactggcttaccaaactcccaaaaatgcccctc
acagcaatccaaacgttcgaaagagccctcatctccccccaaaaacccgtggtgatcttt
gatgattactcaaaactcccggctggttacatagacgccttcctctccctgcacaagaac
gtcgaatgggctattctgacgggagaccccaggcaatccacttttcatgagagtaatgag
caagccatgatcaaccacctctccaaatccaccgagcacttctcccagttctccaggtat
tacatcaatgccacacacaggaacaagcaggacctagctagattcctgggggtatactca
gagaaaacaggcctgacctcaattagcatgtcctcaagacctgaacctgactggcatcta
ctagttccctccctcattaagaaacgttcctacacggagatgggatacaagacctcaaca
tatgcaggctgccagggcatcacagctgacagagttcaggtacttctagacacagacaca
acactatgctccgaccaagtgctctatactgccctatccagagcggtacatgcagtacac
ttcatcaacacctcagccacctcatcagctttctgggacaagctcaacagcaccccatac
ctcaaaaccttcctcagcactctcagagaagaccgacttagggaggaaggccccaaaccg
gaaacaccagaggagcccaaacctgcaacaacccatttcccagtggagaatgagaaccta
tccctggaagacaaggtggaggaacttctggagaaacacgaaagggagttatacagctca
gaccatggatactctaattgtgtccaaaccgatgacccagtggttcagctcttctcccac
caacaagccaaagaccagaccctactgtgggccaccatcgaagccagattaaagatctcc
aatccaaaagccaacatggaagaattcaggatgaagaaaaacgttggtgacgtactctgg
ctgaactacaagagagccatgaaactcccagacaagcccatagaattctcacatgagtta
tggcatgcatgcgcggaagaagtccaaaagacttaccttagcaagccactaaacatgata
aagaatggagagaacagacagagccccgacttcgacaagcacacaatctccctcttcctg
aagtcacagtgggtaaagaagttggagaagcttggagccccaaagattaaaccaggccaa
accatagcctcatttcaacaagccacagtcatgctctacggaaccatggcacgctatatg
aggaggatcaggcaagcattccaacccccaaacattcagttgaattgtgagcagacccca
caacaattgaccaccttcatcaaggaccagtggagtttcgatcagccagcctacgccaac
gacttcacccagttcgaccaatcacaggatggtgcgatgttgcaattcgaggtcctcaaa
gccaaacaccacaatataccagaggcaatcatccaaggctacatagacatcaaaacaaat
gccaaggttttcaccggcgtactagcaatcatgcgtctaacgggagaaggacccacattt
gatgcaaacaccgagtgtaatatagccttcaaccacacaagattccacatatcagacgat
actgcccagctgtatgccggagatgacactgccttctcaaagatccccattgagaaagtc
agcttccaaggggtggctaaacaactcgccctcacctccaaacccttattctacaagcaa
aagaaaggggagtgggcagaattctgcggctacagcatcacccccttgggactgatcaaa
gagcctaagaaactgcaagccaacctcactctagccatcaaacagaacaagatcaaggat
acagtaaacagttacagccaagatgtggcactcgcttatcaacacaaggacgagctgtat
gaaatctttgatgaaaaccagatgagggaccaccaaacaaccgttagaacacttgttaag
tttggtggtaatgagattctcgcaaattactag

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