Viruses: 1494007
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Entry
1494007 CDS
T40000
Symbol
RdRp, CymMVgp1
Name
(RefSeq) Cymbidium mosaic virus; RNA dependent RNA polymerase
KO
K26615
Alphaflexiviridae RNA-directed RNA polymerase
Virus
12178
Cymbidium mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
Viral_helicase1
RdRP_2
AAA_16
Cu2_monoox_C
Motif
Other DBs
NCBI-GeneID:
1494007
NCBI-ProteinID:
NP_054025
RS:
NC_001812
UniProt:
O10688
LinkDB
All DBs
Position
NC_001812:73..4326
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AA seq
1417 aa
AA seq
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MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTEEEADCLENLGVTVNP
FAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYLRRAANNKDIFRNQHIE
PKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQNSPKLKILLATLVLPVEA
LHRHPSLYPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQWLTLGKLIINDPLKVKKPL
TLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQIFHPKGMNANKPLSKRRAM
QLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTHLVNYLLFISHLSSVSSYDDI
LSSNIFQHFTIPIKNKIRELVQLFTGADQFNQLLKALDWQTFSYSMPVETIHTRAANYQV
AKTVRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQDPSSSEAEDSEDDTDSVDFNLP
PTHDLPPNFDPLDKGKSIIVDTDNPSTSTAPAVTFAAGINSSASTNISFGSFTPEAEATP
PPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELICPITEIKTVPHCPFPDKVPDGCVLA
LKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLPAMNMPWKASLAYVTQHGDREIPGVV
IHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLGRRNDWLNKIGSYEQTNIKTFEKALIQ
PVNDVVIFDDYTKLPPGYIETMVYHHHNLDLIILTGDPMQSAYHETNRDAYISLIPDASA
SFSEYCEFNINATHRNVAELACLLGVYSERQGKLAVSFSTAPLSKGKVPILVPSRMKQEA
FADVGNRCMTYAGCQGLTAPKIQILIDNHTAFCSEQTLYTCLSRAVDQIHFINTGPNSQA
FWTKLESTPYLKAFLDNYREEQTERLTSTAPEREVREPAPPKTHIPVENTSGLRISALDL
PEKHSREIFNKAHGFSNAIQGEGVAPMFQHQQAKDETLFKATIDARLSITHPDENKREFA
MKKDTGDVLFVNYKAIMNLPHEPVPFEPRLWNICKAEVQNTYLAKPIANLINGTLRQSPD
FPANKIALFLKSQWVKKIEKIGAIPVKPGQTIASFMQETVMLYGTMARYLRKMRQRYQPA
HIFINCEKTPEDFNKFVLEHWSHKQVAHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDV
IEGYIQIKLTAEIFLGTLSIMRLSGEGPTFDANTECSIAYNATRYHINEDVTQVYAGDDM
AMDHVCPEKKSFKALEKKLKLTSKPLYPKQKPGDWADFCGWTITPYGIIENPKKLDACLQ
LHTQLGDADKVARSYALDAKYAYDLGDRIHEILNADEMTSHFNVIRQLHKLHQQDVLVPP
ETTVATAVKSQPDMEDLWLRALSFPDWTDRAQLLKRG
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagtacgtgacacccttgacaggctccgtgatccgtcggtccttacctcaatt
aacgaggaagcccaccgacatatccgccctgtccttgcctcggcactcgtaaactgccct
tacgcgttgaccgaggaagaggccgactgtctcgaaaatctcggcgtgacagtcaatccc
ttcgccatccaaacgcatacacatgctgcagctaaaactgttgaaaatcgcatgttggaa
attgttggcacccaccttcctaaagaaccctccaccttcatattccttaagcggagcaag
cttcgctacctacgacgcgccgccaacaacaaagacatatttcgaaaccaacatattgag
cccaaagacttattgcgttacgatgacgagtcttgtgaagtaatgccagaatgctccaca
agcacagcctacatcagcgatgctctccatttcttgagctacgctcagcttgggaaaata
ttccagaattctcccaagctgaaaattctgctggcaaccctggtcctccccgtggaagcc
ctccataggcacccatctctttatcctgccatctatactttgaactaccacaaagatggc
tttgaatatatacccggcaatcacgccggaggtgcctacttccacgagtactccactctg
cagtggctgactctcgggaaactaattatcaacgatcctttgaaagtaaagaaacccctt
actcttaccgtacagctaatagaaagtctaggggctaaccatcttctacttatcacccga
ggggatcttcgcacacccaaactgcggacattcgctaaagatacccatgttctactacca
caaatattccatcctaagggtatgaatgcgaacaaaccattgtccaaacgtagagctatg
cagttgtggctctacgccaaatctgttaaagaggtgagcgaacgggatctttatgctaag
gtgaggcaattgatcccgacttctgagttagacctttttgaccctgtggaggtgacccac
ttggtcaattacttactattcatcagtcacctttcctccgtatcttcgtatgacgacatc
ttgtcgtctaatatattccaacatttcaccattccaatcaagaacaagatacgggaattg
gtccaactattcaccggagcggaccaatttaatcaactgctcaaagctctcgactggcaa
acattttcgtactctatgccagtagagaccatccatacacgtgcggccaattatcaggtc
gctaaaaccgttcgcatgtgcagagacctaccatgcgatgaatatgatcgtgtaaaggat
gtcctcagacagctccctgacggagtgacgttgtttgaggaaaacgacaagcaagatccc
tcaagttctgaagccgaggactctgaggatgacactgactccgtcgacttcaaccttccc
cccactcatgacttgcccccaaactttgatcctctagacaagggcaagtccattatcgtt
gacaccgacaacccttcaacttccacggcacctgccgtcacttttgctgccggtatcaac
tcctcagcctccacaaatatttcatttggaagcttcacacctgaggctgaggccaccccc
cctccccccatggaaaagttaccatgggatctttggattcccctactggaacaacatggc
tttaaaggaaagagtaagctgtacaaacccacgggtgaactaatctgccccataactgaa
atcaaaacagttccccactgcccctttcccgataaagtcccggatggctgtgtgcttgcg
ctcaaatctattaagcgtttcgccacaaaaatgactatgctcagttctcgagcttccgcc
tacacttccgacattaagaatagtagaactgggaagctcctacccgccatgaacatgccc
tggaaagcctctctcgcctatgtcactcaacatggtgatagagaaattcctggcgtcgtg
atccatggcgccggtggctgtggcaaatcttatgccatccaaaaatggttgagaagctgc
tctgatccttgtgcagctactgtggtatgcccaactctaggacgacgtaatgactggctc
aataagatcggaagctacgaacaaacgaatatcaaaactttcgagaaagctttaattcag
ccagtcaacgacgtagttatttttgatgactacaccaagctaccccctgggtacatcgag
accatggtgtaccatcaccacaacctcgacctgatcatattaactggggatcctatgcag
agtgcctaccatgaaactaacagggatgcctatatctctttaatacctgatgcctctgcc
agttttagtgagtactgtgagttcaacatcaacgccacccaccgtaatgtagctgaactc
gcttgcctccttggcgtctattccgaacgccaaggcaaactcgccgtctccttcagcacc
gccccactttctaaaggtaaagtacccattctggtaccctctagaatgaagcaagaggct
tttgctgatgtcggcaaccgttgcatgacttatgccggttgccagggtctcactgcccct
aaaatccaaattttgatagacaaccacactgcattctgctctgaacaaacattatacact
tgtctatcacgagctgtggaccaaatccacttcattaacactggtcccaactcgcaggct
ttctggaccaaattggaatcgacgccgtacctaaaagctttcctcgataattaccgtgag
gaacaaactgaacggctaacatctaccgccccagagcgtgaagtccgtgagccagcgccc
cccaaaacgcacatccctgtcgaaaatacatctggcttacgtatttctgcacttgacctg
ccggaaaagcactctcgcgaaatcttcaacaaggcgcatggcttttccaatgctattcag
ggggaaggcgtagcccctatgttccagcatcaacaggcaaaggacgaaacccttttcaag
gctaccatagacgctagactctctataacacatcctgatgaaaataaaagagagtttgcc
atgaagaaagacaccggggacgtcctttttgtcaattacaaagctataatgaatctaccc
catgagcctgttccttttgaacctcgtctctggaacatctgcaaggccgaagtgcagaac
acatacctagccaaacccattgcaaatcttatcaatggtaccttaaggcaatcacctgac
tttccagccaataaaatagccttattcctgaaatcgcaatgggtaaagaaaattgagaaa
attggagccataccggttaaacctggacagactattgcatcatttatgcaagagactgtt
atgctgtatggcaccatggcacgctacctccgtaagatgcggcaaagatatcaacccgca
catatatttatcaattgtgaaaagactccggaggacttcaataaatttgtacttgaacac
tggtcacacaagcaagttgctcacactaatgattttactgcttttgaccaatcgcaagat
gctgccatgctccaatttgaagtcatcaaagctaggtacttcaatatccccgaggatgtt
atagaaggatacatccaaattaagctcactgctgaaatcttcctcgggacactttccatc
atgcgcctatctggtgaagggccaactttcgacgccaatactgaatgctctattgcctac
aatgccaccagataccatattaatgaagacgtcactcaagtatacgccggtgacgacatg
gctatggaccatgtgtgccctgagaagaagagcttcaaagctttggaaaagaaactgaaa
ttgacctcaaaacctctttatccaaagcaaaaacctggagactgggccgatttctgcggc
tggactataacgccttatggcatcattgagaatcctaagaaacttgatgcatgcctacaa
ttgcacacccaattgggcgatgccgataaagtcgctaggtcatacgcactcgatgccaaa
tatgcttatgatctgggcgatcgcattcatgagattctgaatgctgatgaaatgaccagc
cactttaatgtcataagacagttgcacaaactgcatcaacaagatgtgctggtcccaccc
gagaccaccgtagccacagcggtaaagtctcaacctgacatggaggatctgtggctccgt
gcgcttagcttccctgactggacggaccgcgcccaacttttaaaacggggttaa
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