Viruses: 1496970
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Entry
1496970 CDS
T40000
Symbol
CSSVgp3
Name
(RefSeq) Cacao swollen shoot virus; polyprotein
Virus
31559
Cacao swollen shoot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Caulimovir_coat_dom
RVT_1
RT_RNaseH
RVP
RT_RNaseH_2
zf-CCHC
Asp_protease_2
RVT_3
gag-asp_proteas
MP
Beta-prop_RSE1_1st
TcaA_2nd
Retro_M
Motif
Other DBs
NCBI-GeneID:
1496970
NCBI-ProteinID:
NP_041734
RS:
NC_001574
UniProt:
Q66233
LinkDB
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Position
NC_001574:1272..6776
Genome browser
AA seq
1834 aa
AA seq
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MSRARPQHPVPSVTTTTSEQNREGPLYEDQIRDYRRGQRRIFNLRRRARRLRRSMMGSRY
QETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVD
RAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQM
EIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNT
PNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRN
LVDGSISIRFHDYEAATSASRPHYNEEDEEVESETESEIREHTIAVWIGEEEIPDQTGRK
KVWEESSNGNGRFFRYYTPPPTFEGQIIATGWGSDDDNEKTPPKWDESPDEEGPTEPIWD
QEEEEDEYDPNVYRAYLQKEEDEWQEITASLREEMEYPKRRPQTEMAFSETVDYTPPGDT
MMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFLKRDEYTEWWQLPSSQGTTGALFV
MPKQMGLFHEVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAE
YQQLLTQADGRQGTQNILSQIKRIFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFL
NDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILFAYRY
LEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTSKYGMRKSRTYKGKPHASHARVEKRKHL
IRNKKCKCYLCGDEGHFARECPNQRRDVKRVAIFEGIDLPEGFDIVSVEEGEEESDAIYS
ISENEDGELDTEVVHEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYHCMHQWEHNKEIL
VVAHINCHFCKQPTQLRSRIHCPTCQLTSCFMCAPIYCNMIVQQQPKPPVPFNTHTLLQQ
QAAYIQWLEKENQRLTEAVEFYKKEAEELRLERDLEQDRRSLEPTLLDKGKKVQILDPDE
DQHTAYLEEDTISRVIGHTVEQQEVRKPVKKGNMLYNLDVVLHIPEVGRPIKVKAILDTG
ATTCCININSVPQTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAFPL
SLGDGIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTRLAAVMVGGTTASELGGGEE
SKSDSESMFDLSETEEFDSETHQQIVSHVAAQAQQQKLDPKLQQLMVQLQDQGFIGENPM
QHWAKNKILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHIKALLDIGVIRPSKSKHRTT
AFIVESGTVIDPVTKKTIHGKERLVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKVFSK
FDLKSGFHQVAMAEESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFI
AVYIDDILVFSENMAEHTKHIGIMLKICQENGLVLSPSKICLAQREIEFLGTVISQGQMK
LQAHVIKKIVNKANIELETTKGLRSFLGLLNYARIYIPNLGRKLSPLYAKTSPTGEKRFN
RQDWHLIKEIKDMVQKLPNLAIPPARCYIIIESDGCMEGWGAVCKWKLAKEDSRTTEKIC
AYASGKFGVVKSTIDAEIYALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTSTHKPS
RIRWITFSDYITGLGVPVTIEHIDGKENQLADTLSRLVYTTWNQSQTHQPEEEELEKSQH
LSFAGLAIPIAWPMMGSYNKRRTPLLTGQSLWQRNKPSQHSSTASKSRQPRKHYWPYVTY
RAYSTSRETIWPLLPLETTGLATDCQLPNKTQPP
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgagcacgaccgcaacacccagttcctagtgtgactacaaccactagtgagcaa
aacagggaaggacctctatacgaggatcagatcagagactaccgaagaggacaaagaagg
atctttaaccttcgaagaagagccagaaggttaagaagatcaatgatggggtctagatat
caagagaccctagaacaagaaatagatccacagacaacactgaggttgtccatgcaagaa
cgagcaagactagtaccagctgaggtactgtacagatccaggcgagacactgttcatcac
agagtctacacacaccgatctgaagagtcagtcctatgtgttggcggaagccaagtggat
agggcgtttatacagcctgaaagtctggaacaactccaaaggacaggaatgtcctttatt
catatcggaattctgcaagtgaggattcagattctgcaccgacaagaagaaggcaccatg
gccttggtagtattcagggataacagatggtcgggagatcagtctattttcgctcaaatg
gaaatagacctaacaaaaggaagccaattggtgttcgttataccagacaccatgatgacc
atcggagactttgcccggaacgtacaactatccatcctcacaagagggtatgaaaattgg
cagaacggagaagccaatctcctgataacacgtggcatgacagggcgactgtccaacact
cccaatgtcgcctttgcttaccaaattgccagcgcaacagattacttggcaagtcacggt
gtaaaagctatcgcaggaaagaaaatgaatctgcaacacctgcgaaaccaacagtggata
ctacgtccaccacaaacggacatcactccaatgcaaccaagatcggttgaaacaagaaat
ctcgtagatggaagtatctccatcagattccatgattatgaggcagctacttcagcttca
agacctcactacaatgaggaagatgaagaagtggaatcagaaacggagtcagaaataagg
gagcatactattgcagtctggataggagaagaagaaattccagaccagacagggagaaag
aaggtatgggaagaatctagtaatggaaatggaagattcttccggtattacactcctcca
ccaacatttgaagggcaaatcattgctacaggatggggaagtgatgatgataatgaaaaa
actcctccaaaatgggatgaaagcccagatgaagaaggacccacagaacccatatgggat
caagaagaagaagaagatgaatatgatcccaatgtctatagggcatacttacaaaaggag
gaagatgagtggcaagaaatcacagctagtctcagggaagaaatggagtacccaaaaaga
cgaccacaaacagagatggcgttctctgaaacagtcgactatactccacctggtgacact
atgatgacacctgtcggataccccccggcctcgtcatcaagatcaacagtcacaacgcca
agtagaccgccactttttgaaggaaggaccacacacgtgccacgattcctaaaaagggat
gagtacacagaatggtggcaattaccatcatcgcaaggcacaacaggggcgttatttgta
atgcctaaacaaatgggcctattccatgaagtcttctcgagatgggaatccatcaccaaa
aactacgttgcggcccaaggttttacggacccaacagaaaagatggagttcatggaaaat
ctgttaggagaaacagaaaagctaacctggatccaatggagaatgaattacgaggctgaa
taccagcagctgctaacccaagcagatgggcgacaaggaacccaaaatatcttgtcccag
atcaagagaatcttttctttagaagacccagcctctggatccacgagaatacaagatgct
gcatacagagacctggagagattaacctgccacaacataaaagacatagttcaatttcta
aatgactatggaaggcttgcagcaaagagtgggcgactgttcttaggaactgagctcagt
gaaaagttatggatgaagatgccaccagaactagggcatcgaatgaaagaagcatttcaa
aaggagtattcaggcaatgaagtaggagtcttcccgcgcatcttgtttgcctacagatat
ctggagcaagagtgtaaagatgcagcttttaagagaagcctgaagtcattaagcttctgc
aaagacatgccattaacaggatactatgataaaacctccaagtatggcatgagaaagtca
agaacctataaaggaaaaccacatgcatcacatgcaagggtggagaagaggaagcacttg
atcagaaataaaaagtgcaaatgttatctctgcggggatgaaggacactttgcccgggaa
tgccccaatcagaggagagatgtcaagagagtagccatttttgaaggaattgatcttcct
gaaggctttgatatcgtctcagtagaagaaggagaagaagagtcagatgctatttatagc
atatctgaaaatgaagacggagaacttgacactgaagtagtccatgagaaagtcttcatg
atgagagaagaagaccagtcctattggttaggaaagacaaaccattggacggctatggtg
cgagtcagcagtcagcaatatcactgcatgcaccaatgggagcacaataaagaaatatta
gtggtggcccacatcaactgccacttctgtaagcaacccactcagttaaggagtcgaata
cactgtcccacgtgtcaactcaccagttgcttcatgtgtgccccaatatactgcaatatg
atagtccagcagcagcctaaaccaccagtaccgtttaatactcacacactgctccaacaa
caagcggcttatatccagtggttggaaaaagaaaatcagcggttaactgaagccgttgaa
ttctataaaaaggaggctgaagaattaaggctcgaaagagacttagagcaagatagaagg
agtctggaacctacgttgttagacaaaggaaagaaggttcagattcttgatccagatgaa
gatcagcacacagcgtatcttgaagaagataccatcagccgtgttatcggccatactgtg
gaacaacaagaggttagaaagcccgttaaaaagggaaacatgctctataacctcgatgtg
gtgttacatatcccagaggtaggaagacctatcaaagtcaaagcaattctagacactgga
gcaaccacatgctgtataaacatcaactctgtaccacaaacagcaattgaacagaacact
tttctggtacaattccgaggcataaattccacgcaatctgtggataagaaactcaaatat
gggaggatgactatcagcaatcaccagttcagaatcccgtactgttatgcctttcctcta
tcccttggtgatggaatagagatgatcctagggtgtaatttcatccgtgggatgtatggc
ggtttgcgtattgaaggtcacacaatcaccttctacaaaaatgtcactacaatccaaacc
cgccttgctgccgtaatggttggtggtacaaccgcttctgagttagggggaggggaggag
tccaaatccgattctgaatccatgtttgacctctcagaaacagaagaatttgactcagaa
acccaccagcagattgtgagtcatgttgcagcccaagcccaacaacaaaaattggatcca
aaactccaacaactaatggtccaacttcaggatcagggctttattggggaaaatcctatg
caacattgggctaaaaacaagatcctatgtcgactagatatcaagaatcctgatcttata
atagaagacaagcccatcaagcatctaacaccggccatggagaaacagttccagaagcac
atcaaagcactcctggacattggtgttatcaggcctagtaagtcaaaacacaggactacg
gccttcattgtggaatcaggcactgttattgatccagtcacgaaaaagactatacacggt
aaagaacgtttggtcttcaactacaaacgcctgaacgacaacactgaaaaggaccagtac
tcgctacccggtatacagaccatcctaaagcgggtgggcaacaagaaggtcttcagcaag
ttcgatctaaaatcgggcttccatcaagttgccatggcggaagagtccatcccttggact
gctttctgggtaccgcagggcctttatgaatggttagtgatgccctttgggctcaaaaac
gctcctgcagtatttcaaagaaaaatggaccaatgcttcaaaggtacagaagaattcatt
gcagtgtacattgatgacattttggtcttcagcgaaaatatggcagagcataccaagcac
attggaatcatgctcaagatctgccaagaaaatgggctggtactaagcccaagtaagata
tgtcttgcccaacgcgagattgaatttttgggcacagtcatctcacaaggacaaatgaag
cttcaggcccatgtaatcaaaaagatagtcaacaaagccaacatagagctagaaacaaca
aaaggcctgagatcctttttgggcctcctcaactatgcccgtatctacatacccaacctg
ggtagaaagctaagtccactatatgccaagactagtcccaccggagagaaaaggtttaat
cgacaagattggcatctgataaaggaaatcaaagatatggtccaaaagctcccaaacctc
gctatcccaccagcaagatgctacattatcattgaaagcgatggctgcatggaaggatgg
ggggccgtatgtaagtggaaattagcaaaagaagattcccgcactactgaaaagatttgt
gcgtacgctagtgggaaattcggtgttgtcaagtctaccatcgacgccgaaatttacgca
ctcataaaagcattggaatcttttaaaatcttctatctggacaaaaaacatttggtggtg
cgaacagactgtcaagcgatagtgacattttacaacaagacaagtactcataaacccagt
agaatacgttggatcaccttttccgactatataacggggttaggagttccggttactatc
gaacacatagacggaaaagagaaccagttggctgatacactaagcagactcgtgtataca
acatggaaccagtcccaaactcaccaaccggaggaagaagagctggagaagtcccaacat
ctcagcttcgcggggctagctatccctatagcttggcctatgatgggctcctacaacaaa
agaaggacgccattactcacgggacaatcactctggcaacggaacaagccatctcagcac
agctctaccgcatcgaagagcaggcagccaagaaagcactattggccctacgtgacctac
agggcgtactccacttcaagagagactatttggccgctactgccactagagacaactggg
ctagcgacagactgccagctgcccaacaagactcagccgccctag
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integrated database retrieval system
