Viruses: 1725563
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Entry
1725563 CDS
T40000
Symbol
HCRSVgp1
Name
(RefSeq) Hibiscus chlorotic ringspot virus; RNA-dependent RNA polymerase
Virus
53181
Hibiscus chlorotic ringspot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_3
RdRP_4
RdRP_2
Motif
Other DBs
NCBI-GeneID:
1725563
NCBI-ProteinID:
NP_619671
RS:
NC_003608
UniProt:
Q9IR83
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Position
NC_003608:31..2238
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AA seq
735 aa
AA seq
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MLSHAFSIAFETASLGAALCVAPFAAAVEIITHPRIAPRDPCIAEELCMRDELEVADPTD
EEPEACLENISGTSSDKKVSKIKRRHRGKFALHAAIAAKLHFGGTPTPTRSNELAVRRWL
ASYCKERRLVDTHAIQAIALATPLVLTPGAAEITERAILNSAVFGMRRAALAEASKPTSL
TYQMVFEPHRPRTWLRAWRKVVGLPDFQGYSPVKXGCLREIAGVDTKIVRGEHQSMAVFP
REGISKPRRIFQVCGMGNGTTFGVHNNSLTNLRRGLVERVFYVEDACKNLVPTPQPLPGK
FQELKYLARRVARIAGHHTPIPREHYPGLYKGRRYQIYADAVNSLASNPVHRRDSFLKTF
VKAEKINFSAKPDPAPRVIQPRDPRYNVEVGRYLKPYEHHLYRALDVVWKGPTVLKGYTV
SEIGSIMHSHWSQFQKPCAVGFDMKRFDQHVSVDALRFEHSVYGRSFCSKELDRLLEWQL
LNSGVGHANDGYIRYKVDGCRMSGDVNTAMGNCLLACLITKHLLKGIRCRLINNGDDCVL
FFNTPDLAAVTERLAHWLDFGFQCVVEEPVYELEEVEFCQMKPVFDGEEWVCVRNVHVSV
AKDTYSINPWNNECDAGRWIRAIGECGEALTGGIPVLNAYYKVFKRAYKAPGRVKESLAF
DSGMYRLSQRCSRSFHEPTEEARVSFFKAFGVDPMAQMAIEEFYDSMDIELEFAPEGKLD
DISLLWLLRNRMIAS
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgctctcacatgctttctcaattgctttcgaaactgcttctctcggtgcggcactatgt
gtcgcacctttcgccgcagctgttgaaattatcacgcacccccgtatcgctccacgagat
ccttgcatcgctgaagagctctgtatgcgcgatgagcttgaggttgctgatcccactgat
gaggaacctgaagcttgtctggaaaatatttccggtacttcaagcgataagaaagtgtct
aaaatcaaaaggcgacacaggggtaagtttgctctccatgcggcaatcgcagcaaagcta
cattttgggggcactccaaccccaacgcgctcgaatgagcttgctgtgcggcggtggctt
gcaagttattgcaaggaaaggaggttggttgatacacacgctatacaagcgatcgctctg
gccactcctctggtacttacgccaggggccgctgaaatcactgagcgagcgatcctcaat
agcgctgttttcggtatgcggagggcggctctcgctgaggcctctaaaccgactagtctc
acataccaaatggtatttgagcctcatcggccgaggacttggctcagagcctggcggaaa
gtggtgggtctccctgattttcaggggtactcgcccgtgaaataggggtgccttagggaa
atagctggtgtggacaccaaaattgtccgtggagagcaccagtctatggccgtattccct
agggaaggaatctccaaaccccggcgcatcttccaagtctgtggaatgggtaatgggacc
actttcggagttcacaacaattccttaactaatttaaggagaggtcttgttgagagagtg
ttctacgtggaagatgcctgcaaaaatttagtcccgacccctcagcccctacctgggaag
ttccaggagctgaagtatctggctcgacgtgtcgcgcgcattgctggtcatcatacccct
atccccagggaacactaccctgggttgtataagggcaggaggtaccaaatttacgccgat
gcggtcaacagtttggcatctaatccggttcaccggagagattcctttctgaagactttc
gtgaaagctgagaagattaacttttcagcgaaaccagacccggctcctagagttatccag
cctagggatccgagatataatgtagaggtaggtagatatcttaagccctacgaacaccat
ctatatagagctctagatgttgtttggaaagggcctaccgtgcttaagggatatactgtc
agcgagattggaagtattatgcactcgcattggtcacaattccagaaaccatgtgctgtg
ggttttgacatgaaacgatttgatcagcacgtttctgtggatgcgttgcgattcgagcat
tctgtgtatggaaggagtttttgctctaaggagcttgacagattgctcgagtggcaactc
ctcaattccggggttggacacgccaatgacgggtacattaggtacaaggttgatggatgt
aggatgagtggggacgtgaacactgctatgggtaactgtctactcgcttgtctcatcacc
aaacacttattaaaaggcatcagatgtagactcatcaacaatggagacgactgtgtcctc
ttcttcaacactcctgatctagctgcggtcactgaaaggttggctcactggcttgatttt
gggttccagtgtgttgtcgaggaaccagtctatgaactggaagaagttgagttttgccaa
atgaagcccgtgtttgatggtgaagagtgggtgtgtgtgcgtaatgttcacgtgtcggta
gcgaaggatacctactctatcaacccttggaataatgagtgtgacgctggtaggtggata
cgggctattggggaatgcggtgaggcactcaccgggggcatcccagtgctgaatgcatat
tacaaggtgttcaaaagagcgtacaaagcaccaggtagggtgaaggagagccttgcgttc
gattccggtatgtaccggctctcccaacgatgttctagaagctttcatgaaccaacagaa
gaagccagggtgagtttcttcaaagcctttggggtggaccctatggctcaaatggccatt
gaggagttttatgactccatggacattgagcttgagtttgccccggagggaaaacttgat
gatatctctctcttatggcttctccgcaatcgaatgatagcttcatag
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