KEGG   Viruses: 17778764
Entry
17778764          CDS       T40000                                 
Symbol
X811_gp1
Name
(RefSeq) Carnation yellow fleck virus; polyprotein 1a
  KO
K21077  Closterovirus replicase polyprotein 1ab
Virus
940280  Carnation yellow fleck virus
SSDB
Motif
Pfam: Vmethyltransf Viral_helicase1 Zemlya Peptidase_C42 AAA_19 AAA_30
Other DBs
NCBI-GeneID: 17778764
NCBI-ProteinID: YP_008858530
RS: NC_022978
UniProt: V5IV38
LinkDB
Position
NC_022978:109..8103
AA seq 2664 aa
MAFFNINAVPSTFSVSLNAFLARRDLKLLDSVPHSLRESNAISKVRLTLSLSAAVPRPFA
SNVRLQFCSSAEMPYPSVPLGFCLETVILEFNGCLTTFSLPSPLLNLVLCRPFSVLPTGV
LSLSSRVVPSDTFTKLCEFIFFFSLSSPFCEQVLLSALRFPLNRFVFHPGPLSVTTESFC
FAAKTLPRGRLLQFHKSKRTNRPETLVIHTSGLTFKTSAVGITSKPNSRPVTVKSATGES
YEAYEILRSDFRNLRVKREVPFSRPQKPRKVKKVVEPFSLPEEVREKKKSKFQLERNERA
IEPGYIMFGSFKCALPPLKTDGKVIPRVPLLSGDAKEPTSSPLPPQSSRKRAPENRAVPR
KSLSSDSNLRRSPVKTFKPVVTSDSKFLTENTMGVRRVRTDRVLKNASHTFTYKKVPITR
FHKANKSFYVKRSPTVSSCRVYQSALVAYDNVLKNLPLYHPLSERLRFLIHFIGSDFEIE
VQPLRERRLSVTLILPRGEAYCIVTPRIPNYHIALSIARGERRPPTQLLRYQPGEGLCYL
THAAFCCAHFQRTFKEEDFYVGVYTTKHIVARKLIEKLGPESLNYHVRGRQTARDLFHCD
LMSTTSYPFYSLPKFLGGKKTRRRLKITSSLKHKAIESAFERIPNNKDNLLARSVEKDLV
DFKEDVKKFTREKPIVKVPFYMGESVQSCLTRSYPQFNLQFTHSTYSDHPAAAASRLLEN
ETLTSIVRTRFSDIGGCPLFHIKRGSVDYHVCRPVYDVKDAQRRVLREFQAKNVVEGMTL
EQLVEAHTRVSVCPHVLGGCDVKSDALILVQVYDASLSEIASAMIKKNSKVAYITMITPG
ELLDEREAFSIESLDCDVIVDCHRDVVQYKFGSSCYSHKLSNIRNIMLTPAFTVGDDLFS
VEMYENRMGVNYYKVTRSAYSPEVRIVKTLRYRRACSEVVQVKLPRFDKSLKTFLPGYDF
IYLDAKFVSRVFDYVVSNCSVVNSKTFEWVWSYIKSSKSRVVISGKVIHRDVQIDLKHSE
CFAAVMLAVGVRSRNATEFLAKNLNYYTGDASCLEIVSFFFREWSRRMFAEVNRSFRSLM
RNILSASLDYEFLDLDDSLQHLLEYSETEVRVSIARKGEIDCNEENRVLTEIIAQAADSK
AVLQGLTSALNDVPRKSPAGGLRGGSKHGSGFFLALVENLKNIFFCVSDAVRFVSASLQV
FAQCKCVKFLRALLSLAEKVSPFISVVSLGNWLYEAFNVLLTSGNLDYASGAFKDFLSKT
VSFLAVVTPVKELFKTILKLLLNASELSKSVRRKTKIFSGAYWDIWFESILGDSEEYNYI
ELLSSALTAFLSNSNLLLRGVNASVVVTEILLDFAVTPSLELLLKSVSPPDRTSASALYR
RVLSSVLASFRGMERRSLFSNLFFVCGFLPVMVRKFFSSFVSARSKNLTLGFWEFGLDNF
FFLKYAASVVRSYLLTTSCDLAEFLIDSISSRLTGAAKERVSGLKSTVKNFCCRMFTKNS
LFAGREPTDSDDEEFFSSDESYPGLRGGSTELTILQLLVAFSRFLSRSRASLESACYQTY
ERLERSMKLYFFPLGDSSDSVSGLQRCSGSFTFSSDDEGFLEDDLLRQSYENYYSSDEEY
INYGGEPTMIRSLLNVCKNFLKTYCCGSELRIKVSSFLLMLNDRLCALTPRVDRSVNNGP
GLKGGSLHLTISSIIKGCLSFACNSWLHLCLARLARECRGTRYQEVVFYLRIATSAVFPS
SFVFVLTALHPKNFSAALERLLEWFRFHRLPISAHFVRNLLSVCHTYARSRSRLILLNFV
YSRTPPGDGVGAPFIGGEVNAQPGVEVFHIDALPEIEVDDIRIDRSWEPDTSDSDEDSPN
SVLTTPGLRGGSKNGRAYARFFLKLSWKIVARIPKLLYFFRNLIAFSFENCASNSALRVL
LSLLRFFDNQSLTTLLFVVKHRESFLLALSDVELVLLNSGRVGSLRFVSFVRRFFDHLCS
VVPHPTTISSSLRKFFHLTKIFISGSSDSGTFMGAAKTKGKFIPPASSDSTTLKYERLEA
LKTDIREHVISTCCGDDARSCDEDSENASEVRSVLPTVVRRSITGGECSYSTERSANERA
NLLPHVGKIVTDNRDRRTLHQGKRNLHGVSEFLNAINTSNEQPKPVIVDYCPDTGGLTNS
VREFYYLNELALSELSNKLREYYDQLNVVGFKRKESLCDKDEDLFVLRAGEGSVEGRNSK
VPLKSFRTHEFCFRSEGLVPYDGLNRMNTLFHTQSSFVASNAFLSGFLSYRTFKFTNLAV
NILLYEAPPGGGKTTTLIDTFCETISKVDSLILTANKSSQVEILAKVSRLVAGRDDVTCD
LREKILTIDSYLMNNRGKTCKVLYLDECFMVHAGAAIACIEFTKCASAVLFGDSKQIHYI
DRNEYDVAVLSDLNRFVDDSHRVYGEVSYRCPWDVCAWLSTFYPKTIATTNLTSVGSSSM
RIREIESVEDVECSADYVYLTMLQSEKKELKKYLRKNNSGNTVLTVHEAQGETYARVNLV
RTKFQDDDPFRSENHITVALSRHVESLTYSVLSSRRDDAIAQAIAKANQLVEAFRVHPTS
FGGSVLDISVSPSTTDRSKCKASSAPYEVINTFLESVVPGTTSFDFGDFSQELSSQAFES
GADKVVIRDSAPVNSSTDHDPQRV
NT seq 7995 nt   +upstreamnt  +downstreamnt
atggccttcttcaacatcaacgctgtccccagcaccttttccgtctctttgaacgctttt
ctagcgaggagagatttgaaattgctcgatagtgtcccgcacagtcttcgcgagtcgaac
gcgatatccaaagttcgtctaacgttgtcacttagcgccgctgtccctcgcccgttcgca
tcgaacgtacgtttgcaattttgctcttcagctgaaatgccctatccatccgttccccta
ggtttctgtcttgaaactgttattcttgagtttaacggttgcttgaccactttcagttta
ccttcccctcttttgaaccttgttctttgcagacccttttcggtgctgcccacaggtgtt
ctttcgctcagttcccgtgttgtgccttctgacactttcacgaagttgtgcgagtttatc
tttttcttttctttatccagtcccttttgtgaacaggttcttctatctgctcttcggttt
ccgttaaaccgatttgtgtttcaccccggtcccctttcagtgactaccgaaagtttttgt
ttcgccgcaaaaactcttcctcgtggtcgccttttacagttccacaaatcaaaacgcact
aaccgacctgaaactctagtcattcacacgagcggactgactttcaaaacttctgcggta
ggtattacctcgaaacctaactcgcgccctgtcaccgtgaaatctgcgaccggtgaatct
tacgaagcctacgagatccttcgtagtgactttcgtaacctccgtgtgaagcgtgaggta
ccgttttctcgtccccagaagccccggaaagtgaagaaagtcgtggaacctttctctctt
cctgaagaagtgagggaaaagaagaaatctaaatttcaacttgaacgcaacgagcgtgcg
atcgagccgggctacataatgttcggttcgttcaagtgcgctttacctccgttgaaaact
gacggtaaagttattccgcgcgtccctctcttatcaggtgacgctaaggagccaacctct
tcaccacttcccccacagtcctcaagaaagcgcgcacccgagaatcgcgctgttcctcgg
aaatcgcttagttcggactccaatcttaggcggagtccggtcaagacgtttaaacccgtg
gttactagcgacagtaaatttcttactgagaacacgatgggcgtccgccgagttagaact
gatcgcgttctgaagaacgcctcgcacacctttacttataagaaggttcccatcacaagg
tttcacaaagccaataaatccttctatgttaaacgttctccaactgtgagtagctgtcgc
gtttatcaaagtgcccttgtcgcttacgataatgttttgaagaacctgcccctgtatcat
ccgctttcggaacgtctcaggttcttgatccactttattggaagcgactttgaaattgag
gttcaaccattgcgtgaacgcagactgagtgtcacgcttattcttccgaggggtgaagct
tattgtatcgtaaccccgagaattcccaactaccacattgctcttagcatagcgcgcgga
gagcgccgaccgcctacacagttgttgcgttaccaaccgggtgaaggcctttgttacttg
acccacgcggctttttgttgtgctcacttccaacgtacctttaaagaggaagatttttac
gttggtgtgtatacgactaaacatattgtcgctaggaagttgatcgagaaactgggtccc
gaatctctgaactatcacgttcgtgggaggcaaaccgctagggatcttttccactgcgat
ttaatgtcgacaacttcgtaccctttttatagcttgccaaaatttctgggtgggaaaaag
acgaggaggcgcctgaaaataacttcttctttgaagcacaaggctattgagtctgctttt
gaacgcatccccaacaacaaggataatttgttggctcggagcgtcgaaaaagatttggtc
gactttaaggaagatgttaaaaaatttaccagagaaaaacccatcgttaaagttcccttt
tatatgggtgagtccgtacaaagttgtttgactcgctcctaccctcagtttaatttgcag
tttactcacagtacttactccgaccacccagcggcagccgcctcgcgtttactcgaaaac
gagaccttgacttctatagtgagaacgcgtttctccgatatcgggggatgcccacttttt
cacataaaaaggggtagcgtcgactaccacgtctgcaggcctgtttacgacgttaaagat
gcgcagcgaagggttctaagggagttccaagcgaagaacgtcgtagaaggaatgacctta
gaacagcttgttgaagctcatactcgcgtctcagtttgtccacacgttctcggtggttgt
gatgtaaaaagcgatgccttgattttggtgcaggtatacgatgcttcgttgtccgaaatc
gcctcggcgatgataaagaaaaattctaaggtcgcttacatcacgatgattacaccgggc
gaacttttggacgaacgggaagctttctcgattgaatccctagactgtgacgttattgta
gactgtcaccgtgacgtggtccagtataaattcggttcttcttgttacagccacaaactg
tcgaacattaggaacataatgctcacacctgcctttaccgttggcgatgacttgttttcc
gtggaaatgtacgagaataggatgggtgtcaactattacaaggtgactcgttcggcttat
tctccagaagtacgaatcgtgaagacactacgttaccgtagagcgtgtagtgaagtcgtg
caagtgaaacttccgcgattcgataaatctttgaaaactttccttcccgggtatgacttt
atatacctggacgcgaaattcgtttctagggtttttgactacgttgtgagtaattgcagc
gtggttaatagtaaaaccttcgaatgggtgtggagttacataaaatctagtaagtcgcgc
gtcgtcatcagtggtaaagtgatacacagagacgtgcagatagatcttaaacattctgaa
tgcttcgctgccgtgatgcttgctgtaggtgtgcgttcccgtaacgccactgagttcctt
gcgaagaacctcaattactacacgggtgatgcgtcgtgtttagaaattgtcagttttttc
tttagggagtggagtagaagaatgtttgcggaagtaaaccgtagttttcgatcgctcatg
agaaacatactttccgcaagtttggattatgagtttctggatttagacgattctttgcaa
catttgctcgagtattccgaaactgaagtgcgtgtctcgatcgctcggaagggtgaaatc
gattgtaacgaagagaatagggtactgaccgaaattatagcgcaagctgctgatagtaaa
gcggtcttacaaggtctaaccagcgccctgaatgacgttccgagaaaaagcccagccggt
ggtttgcgtggtggaagtaaacatggttcagggttctttctcgcgttggttgaaaactta
aagaacattttcttttgtgtcagtgatgctgtacgtttcgtctcagcgagcttgcaggtt
ttcgctcaatgcaaatgtgtcaaatttctccgggcgttgctgagtctggctgaaaaagtt
tcaccttttatctcagtcgtttcgctgggtaattggttgtacgaagcttttaatgtgctt
ctaactagtggcaatctcgactacgcttccggagcctttaaggatttcttaagcaaaacc
gtctcatttttggcggttgtcactccagtgaaggaactctttaagacgatcctgaaactg
ttacttaacgcttcagagctaagtaagagtgtgaggaggaaaacgaaaatattcagcggc
gcttactgggatatttggtttgaatccatacttggcgatagtgaagagtataattacata
gaacttctcagcagcgctcttacggcgtttttgtcgaactctaatcttctcttgcggggg
gttaatgcgagtgtcgtggtgaccgaaatcctcctagacttcgctgtcactccttcgttg
gaattgttattgaagagtgtttcccctccagatcgcacatcagcctccgctttgtaccgg
cgtgtgttgagcagtgttttggcgagctttcgcgggatggagaggagaagtctcttttcg
aacttgttcttcgtttgtggattcctccccgttatggtcagaaaatttttctcctctttc
gtttcggcccgaagtaaaaaccttacgctgggtttttgggagtttggactagataatttt
ttctttttaaagtacgccgcttcagtagttagaagttatcttctgactacctcctgtgac
ctagctgagtttctcatcgattcgatttcgtcgagacttactggtgctgcgaaagagcgc
gtgtcaggtctcaaatcgactgtaaaaaacttttgctgccgtatgttcaccaagaattcc
ttgtttgcaggtcgagagccgaccgacagcgatgatgaagaattcttctcgagcgatgag
tcttatccggggttaagaggaggttcaacggagttaacgattttgcagttgttggttgcg
ttttccaggttcttaagtcgttcacgcgcttctcttgaatccgcttgttaccaaacctac
gaaagactggagagaagcatgaagttgtatttcttcccattaggagactctagtgatagc
gtgtcgggattgcagcgatgcagtggtagcttcactttctcatcagatgatgaaggtttt
ctcgaggacgatttgctgcgtcagtcgtatgagaattactattctagcgatgaagaatac
ataaattacggaggcgaacccacaatgattcggagtctactgaacgtatgcaaaaatttt
cttaaaacttattgttgcgggtcggagcttcgaatcaaggtgtcgagctttcttttgatg
cttaacgaccgcttgtgcgcgttaacgcctcgcgttgacagaagtgtgaataacggcccg
ggtttgaaaggtggttcactgcacttaaccatttcgtcaatcattaaaggttgtttgtcg
tttgcatgcaattcctggttgcatctttgtttagctcgtctcgctcgcgagtgccggggc
acacgttatcaagaagtagttttttacttgagaattgctacttcagccgtgtttccttct
tcatttgtttttgttctaactgctttgcacccaaaaaatttttctgcggcgcttgagcgt
ctacttgagtggttccgctttcatcgactgccgatttccgcccacttcgtcagaaattta
ctgtcagtgtgccacacgtatgcgagatccaggtcacgcttaatcctactgaattttgtt
tatagtcgcacacctccgggtgatggagttggagccccttttataggcggcgaagttaat
gcacaacctggagtcgaagtcttccacatcgacgcgctacccgaaattgaagtggatgac
attcgaatcgatcgaagttgggaacccgacacttctgatagcgatgaagactcaccaaat
agtgttctaaccaccccaggattgcggggcgggagtaaaaacgggagagcttacgcaagg
ttcttcttgaagttgtcgtggaaaatcgttgcaagaattccgaaactgctttactttttt
cgtaacctcatcgctttttcgtttgaaaactgcgcatcaaacagtgctcttagggttctc
ctcagtttgctgaggtttttcgacaatcagtcgctgacgactctgctttttgtcgtgaag
cacagggagtcttttctgttagccttgtccgacgtggaacttgtgctattaaactccggt
cgtgttggttcgctacgtttcgtttccttcgtaagaaggtttttcgatcatttgtgctcc
gtggttccgcatccgaccactatctctagctctctaagaaaatttttccacttaacgaag
attttcatttcgggatccagcgacagtggtacttttatgggtgcagcgaagacgaagggg
aaattcattcctcccgcttcgtcggattccacgaccctaaaatatgaacgcctcgaagcg
ctgaaaacggatattcgtgaacacgtcatatccacctgttgcggggacgacgcgcgttct
tgcgacgaggatagcgaaaatgcaagcgaagtacgttccgtccttccaaccgttgttcga
aggtctataaccggaggtgagtgttcttactcgacagagcgtagtgcgaacgaaagagcg
aatctgctacctcacgtgggaaaaatcgtgaccgacaatcgcgaccgaaggacccttcac
caggggaaacgtaacttacatggcgttagcgagtttcttaacgccatcaacaccagtaac
gaacagccaaaaccagtcattgtagactactgcccggacacaggaggtttgactaactcc
gtgagggagttttactacctcaatgagcttgctttatctgaattaagtaacaagcttcgt
gagtattacgaccagttaaacgttgtcgggtttaaaaggaaagagagtctctgcgacaag
gacgaagatctcttcgtgcttcgcgcgggagaaggctcagtcgaaggtagaaactctaaa
gtaccattaaaatcttttagaactcacgaattctgttttcggtctgaaggtttggtgccc
tacgatgggctaaacagaatgaatactcttttccacactcagtcttcatttgtcgcttcg
aatgcctttttatcaggtttcctttcgtacagaactttcaagttcacgaatttggcggtt
aacatacttttgtacgaagctcctccgggtggaggaaagacgaccactctgatagacacg
ttttgcgaaactatcagtaaagttgattcgttgattttaactgccaacaagagttcacaa
gtggaaattttagcgaaagtgtctcgtttagttgcaggtcgtgatgatgtcacctgtgat
ctacgagagaaaatcctgactatcgactcttacttgatgaacaacagagggaaaacttgt
aaagtgctgtaccttgacgaatgtttcatggtccacgccggcgccgctattgcgtgcatc
gagttcacaaagtgtgcttccgctgtgctatttggagatagtaagcagattcactacata
gaccgtaacgagtacgacgtagctgtactttcggatctgaatcgcttcgttgacgatagc
caccgagtgtacggtgaagtgtcgtataggtgtccttgggacgtgtgcgcatggttatca
actttttaccccaaaaccatagctaccactaacctgacttcagtaggttcgtcgtccatg
cgcattcgagaaatcgagagcgttgaagacgttgagtgctcggccgactatgtgtacctg
accatgctacagtccgaaaagaaagagttgaaaaaatatttgaggaagaacaactctgga
aataccgttctcacagtgcacgaagcgcaaggtgaaacttacgctagggttaacctcgtt
aggaccaaattccaggatgacgacccttttcggagtgaaaaccacattaccgtggcactt
tccaggcacgtcgagagtctcacgtattcggttctgagttctaggcgcgacgatgccatc
gcccaggcaatagctaaggctaaccagttagtcgaggccttccgggttcaccctacttcc
ttcggtgggagcgttctcgatatcagcgtgagtccttccactacggataggagtaagtgt
aaagcctcgtccgcaccgtacgaagtgataaatacgtttcttgagagcgtcgtcccaggt
accacctccttcgattttggtgatttttctcaagaactaagctcgcaagcgtttgagtct
ggtgccgataaggtcgttatcagagattctgctcctgttaacagctcaacggaccacgac
cctcagcgggtttag

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