Viruses: 20712494
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Entry
20712494 CDS
T40000
Symbol
NI67_gp1
Name
(RefSeq) Carrot thin leaf virus; polyprotein
Virus
114922
Carrot thin leaf virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C6
Poty_coat
RdRP_1
Potyvirid-P3
Poty_PP
Peptidase_C4
Peptidase_S30
DEAD
Helicase_C
Flavi_DEAD
ResIII
Cas3-like_C_2
DUF5126
Motif
Other DBs
NCBI-GeneID:
20712494
NCBI-ProteinID:
YP_009091824
RS:
NC_025254
UniProt:
S4U1E6
LinkDB
All DBs
Position
NC_025254:150..9350
Genome browser
AA seq
3066 aa
AA seq
DB search
MASIQFGTLPAVSLAITQDGARINAPKELKPTRTTYVSVGRTLIAKNEAMVSKAFEQLNA
KLKTTMERHDRSRVVKAGPRWRLREFTEQQIKEFHARQLKRLRSEANFQQTEHMVSKFSI
AGGAMPSETQAGSCCLQRGKPRALSQRRVSTMHKKIFASESAVQNFVNQIAKISIEKLMT
VEIIGKRSRPLKLQTVKFNDGRYVKFPVKHLQGHKLNVDIHLSAEQESLVYPFIRASAYK
KDVSMHQITYGCSGLAIGAQQVTKGTMNEYTIVRGSFRNKLVDARTYVDNHTKLSMTYYS
SIGEEFFNAFSDKFVELREEQNHTCESNFDVKEVGEVCAIVWQTLMPCGKITCRRCAQDF
RMGQDSHENFKLARRLERAQHEIKTNHKEFPHALELLSTCKFPLRGLPSNDGEFQEVKRL
LDEKKTAPFSHLTLINEKLLEMSLYSPHEAQAASKALLEVTRWHVKRKEGIEGGSLTAFR
NKVSAKSYFNMSLTCDNQRDQNGNFKWGERAYHAKRFFSNYFETIDPAQGYSQYVVRLNP
NGSRKLAIGNLIVTTNLSNFRNQMLGESIEELPLTNSCISKVKGSFKHNCCCVTSDEGIP
LYSEMKAPTKNHLVLGNAGDSKYVDLPTDASLSLYIAKEGYCYVNIFLAMLVNVNEQDAK
NFTKQVRDMAISKLGKWPTLMDLATVCYQMTLFYPDTSDAELPKILVDHKHNMMHVVDSY
GSLTTGYHMLKANTVSQLVQFANDQLESEMKFYQVGGKFEGIRVGGDAMKLLIKSIYRPG
LMKEIIEEEPYLIVLSVLSPGVLLALANSGSLEVGIRRWIRDDAPVARMFAAIYTLAGKM
TLARTLEEQLVFIRQASPILFEEVVHGCKLSASYQVALETVTLIHERNSTDNSLFEIGFK
TLEDKSAAMLEKSYLRELEESWGELSLYGKYLAVKQAYKYRNVSSEFFNPAKQADLKGRY
HISLRSCLIRTRDGFKSGVTRGVNYVGQGFFRMLTASLTFSLRRISKHLPEVFALMNVML
VLSLFVEILNKLQIFVLNHRQLKLESLERKGDDEWLELMSVHKLMKAQNGEDPTIEEFEE
YIHNYHPRLVGVMKEALGDDVQHQGKKRIEEIQMERIIAFVSLVMMMFDAERSDCVYKIL
NKLKGLTNTIATDAVQHQSLDDYQTIDLEKNLTVDFELDTNDHIGTSPREHTFEQWWENQ
ISRGNTIPHYRTEGKFMTFTRASAASVVNEIAHGVHKDVLLQGAVGSGKSTGFPFHLSKK
GKVLLLEPTRPLAENVCKQLASEPFYTNATLRMRGSSVFGSAPIHIMTTGFALHYLMNNQ
QLLNEYDYIIIDECHVLDANAMAFRCALVEYGFHGTIIKVSATPPGRETEFQTQHPVKLL
IEGNMSHESFVNSLGTGANSDVTSRGDNILVYVASYNEVDSLSKKLIDKGHSVTKVDGRT
MKMGSVEIATVGTSKKKHFIVATNIIENGVTLDVDVVVDFGTKVVPILDVDNRCVRYNKT
CVSFGERIQRLGRVGRNKPGTALRIGATEKGLVEIPAKIATEAAFLCFSYGLPVMTNNVS
TSLLANCTVRQARIMQQFELDPFYMINLVRYDGSMHPAIHDILKKFKLRDSETPLNTFAI
PYSDVPRWLTVRDYRKVGVNVNLDEGIRIPFYVKDVPEKVTQSIWEAVTNFKNDAQIKPL
SSASAAKIAYTLKRDIHSIPRTLQILDGLIQSEMERREHYLALTANSCSGTNFSIMNVVN
SIRSRFVTDHSADNIEKLSRARDQIREYKNLHTDVSDLETLKAYGSLECVQHQSKDAISK
HLRLKGIWNKSLMVRDTLVCAGVFVGGAWMLASWYFSKSGEIVEHQGYNKRQRQKLSFRN
ARDAKVGREVYADDDTMEHYFGEAYTKKGKNSGKTRGMGSKKRQFTTFYGCAPDDFSLIR
YVDTLTGHTIDADPLEPAHRIQNQFFDQRMKLIAEDMLEPQHLDTDKAQHIEAYLQRKNT
TNVLRADLRAHVPTLVCKNGNIAGYPERENEMRQTGALRQGVMPDKNEFQEFKHESKALF
KGLRDYNPIASIICKLTNDSSEMRQTLYGIGYGGFIITVQHLFRQNNGTLFVQTRQGEFT
VKNTTQLKMFPCLGRDVLVIQMPKEFPPFPRKLQFRSPIKNERVVMIGSNFQQKSTSSTI
SDTSPIIPRENCHFWKHMISTKDGDCGLPMVSVNDGCIVGVHSMTSVTSTANYFTDFPES
LKTEVLDSPEAVDWIKNWNYNVNTVCYGPMHIIESKPTGMFKPTKLVSDLMREMVAVQGA
QTNWLYDQIEGNLKAIAHVPNQLVTKHVVKGKCTLFETYLATHPEEEKTFQPYMGAYAKS
ALNKAAYTKDVMKYSTTITVGTVSTDNFEKAVKSLIANMEEWGFDKCSYVTDEEAIFNNL
NMKAAVGALYSGKKKDYFADYSVQDKETIVAESCKRLYMGKMGVWNGALKAELRPIEKVQ
ANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSMHTKCPWSVGMTKFYGGWDSLLKSFPDGW
VYCDADGSQFDSSLTPYIINAVLQVRLHFMEDWDLGEQMLKNLYTEIVYTPIATPDGTVI
KKFKGNNSGQPSTVVDNTLMVIIALYYSLHELGYERSQFDQVCKFFVNGDDLIIAVNPSE
VQMLDELQSLFRQLGLNYDFSSRSRDIKELWFMSHQGMEREGKLIPKLEIERIVSILEWD
RSTEPEHRLEAICASMVEAWGYDWLIHEIRKFYSWVLEQFPYNELATQGKAPYIAETALR
KLYLDVDATAEELEAYGDIFQWEDEDEETVYHQEDKDADKVMNAGIGDQPKDKGKNTETD
ANKQLSASKDKDVNVGTSGTFAVPKLKGMASKMRLPKVRGKTVLNLEHLIQYNPEQTDLS
NTRSTHNQFNNWYDGVKKDYELNDDQMEIILNGLMVWCIENGCSPNINGMWVMMDGEEQI
EYPIKPLIDHAKPTFRQIMAHFSDAAEAYIEKRNAEKAYMPRYGLQRNLNDPSLARYAFD
FYEMTAKTPNRAREAHLQMKAAALRNASNKLFGIDGKVSSQEEDTERHTTDDVNRNMHSM
LGVRTM
NT seq
9201 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcattcagttcggaacactaccagcggtctcactagcaatcacccaagatggt
gcaaggattaacgcacctaaggaacttaaacccacacggaccacttacgtgagtgtcggg
cgcacactaattgccaagaatgaggcaatggtgtcgaaggcatttgagcaattgaatgca
aaactcaaaacgacaatggagcgacacgatcgttcacgtgttgtcaaagctgggccacgt
tggaggctcagagagtttaccgagcagcaaattaaggaatttcatgcaagacaactcaag
aggcttcgctcggaagcaaatttccaacaaactgaacacatggtaagcaaattcagtata
gctgggggtgcaatgccatcagaaactcaagctggatcatgctgtctgcagagagggaaa
ccacgagcactttcacagagacgtgtatcaacgatgcacaaaaagatatttgcttcggag
agtgcggttcaaaactttgtgaaccaaatagccaaaatttcaatagaaaaattaatgacc
gtggagatcattggtaagagaagtagaccgctaaaactccaaacggtaaagttcaatgat
gggaggtatgtgaaatttccagtgaaacatcttcagggacataagctgaatgttgacatt
catttgagtgcagaacaggagagcttagtttatccttttattcgagcctcagcttataaa
aaggatgtaagtatgcaccaaataacatatggttgtagtggcttggctataggagcacag
caagtgactaaaggcacaatgaatgagtacacaatagttcgtggatcctttcgcaacaaa
ctagtggatgctcgtacatatgttgataaccacactaaactctcaatgacatattactct
agcattggtgaagagtttttcaacgcttttagtgataaattcgttgagttacgagaggaa
cagaaccacacctgcgaatcaaattttgacgtgaaagaagttggagaggtgtgcgctatt
gtttggcaaacgctaatgccatgcgggaaaataacatgcagacgatgtgctcaggacttt
agaatgggtcaagattcacacgagaatttcaaactcgcaagacgacttgaaagagcacag
catgagattaaaacaaatcataaggagtttccgcatgctctcgaactcttgtcaacttgc
aagtttcccctcagaggtttaccaagtaatgatggtgagtttcaagaagtgaaacggctg
ctcgatgaaaagaaaacagcaccattctcacaccttacccttatcaacgaaaaacttctt
gaaatgagtttatattcaccacatgaagcccaagcagcatcaaaggctcttttagaagtt
acaagatggcacgtcaaacgaaaagagggcattgaaggaggctcactaacagctttccga
aacaaagtgtcagcgaaatcatacttcaacatgtccttgacgtgtgacaaccaacgggat
cagaatggaaatttcaagtggggcgaaagagcgtaccacgcaaaaagatttttcagcaat
tattttgagactattgatccagcacaaggttacagtcagtatgtagtgcgactcaatcca
aatggctcaagaaaattagccatcggaaatcttattgtaacaacaaacctttcaaatttc
aggaaccaaatgcttggtgaatcaatcgaggaattgcctttaaccaactcatgcataagt
aaagtgaagggctcattcaagcacaattgttgttgtgtaacatccgatgaaggaattcct
ctgtactctgagatgaaagcaccaacaaagaaccatttagtgcttggaaatgctggagac
tcaaagtacgtggatttacccactgatgctagtctctctctctatatagcaaaagaagga
tactgttacgttaatatatttttggctatgctagtcaatgttaatgaacaagatgcaaag
aatttcacaaagcaagttagggatatggctatatcgaaacttggcaagtggcctactctg
atggatcttgcgacagtgtgctatcaaatgacacttttctatccagacacatcagatgct
gaattaccaaaaattttggttgatcacaaacacaacatgatgcatgttgtcgactcatat
ggttctctcacaacagggtatcacatgctaaaagccaacacagtatcacaacttgttcaa
tttgcaaacgatcagttagagtcagagatgaaattctaccaagttggaggaaaatttgaa
ggtattagagttggaggagatgctatgaagcttttgattaagtctatttatagacccgga
ttaatgaaggaaatcattgaagaggagccttacttgatcgtgctaagcgttttatcccca
ggtgtgttgctagctttagctaatagtggttctcttgaagtcgggattcgtagatggatt
cgagatgacgcgccagttgctagaatgtttgcagccatctataccctagctggaaaaatg
acattagcaagaacactggaagagcagctagtttttattagacaagcgagtcctattctc
tttgaagaggtggtgcatggttgcaaactgtctgcctcatatcaagttgcacttgaaacg
gtgacgctgatacatgaacgaaattccactgataacagtctttttgagattggtttcaag
acacttgaggataagtcggcagcaatgctcgaaaaaagctatctgcgcgaattagaggag
tcgtggggagagctaagtttgtatggaaaatacttagccgtgaagcaggcgtacaaatat
cgcaatgtttcttcagaatttttcaacccagcaaagcaagcagatttgaaaggcagatat
catatatcactgcgatcatgcttaatacgaacgagagacgggttcaagagtggtgtaacg
agaggcgtcaattacgtagggcaagggttcttcagaatgctcacagcgagtctgactttt
agtctcaggagaattagtaagcacctacctgaggtgtttgccctgatgaatgtcatgtta
gtgctatccttgtttgtggagatattgaacaaacttcaaatctttgtgctaaaccataga
caactgaagctcgaaagtttagaacgaaaaggagacgatgaatggttggagttgatgagc
gtgcataaactgatgaaagcccagaatggtgaggacccaacaatcgaggaatttgaagaa
tacattcacaattaccacccgagactcgttggtgttatgaaggaagcattgggcgatgat
gttcaacaccaagggaagaaaagaattgaggagattcaaatggaacgaataatcgctttc
gtttcattggttatgatgatgtttgatgcggagagaagtgattgtgtatacaagatattg
aataaattgaaaggattaacaaacacaattgctactgatgcagtgcaacaccaaagccta
gatgactatcagactatagatctagaaaagaatctcactgttgatttcgaacttgacacg
aatgatcacattggcacgtctccaagagagcacacttttgagcagtggtgggagaatcaa
atttcaaggggaaacacaataccacactacagaacagaaggcaagtttatgacattcaca
cgagccagtgcagctagcgttgttaatgaaatcgcacatggagttcataaagatgtgttg
ctgcaaggagcagtcggttctggcaaatcaacaggatttccatttcatctttcgaagaaa
ggcaaagtgttattactggagcccacaagaccattagctgagaatgtatgcaagcaacta
gccagtgagccattttacacaaatgcaacattgagaatgcgaggttctagtgtttttggc
tcagcaccaattcacatcatgacaactgggttcgctctacattacttgatgaacaatcag
caattgttgaatgaatacgattatatcatcattgatgaatgccatgtgcttgacgcaaat
gcaatggcatttaggtgtgctctcgtagagtacggctttcatggaacaataataaaagtt
tcagcaacaccaccagggagggagacagagtttcaaacacagcatccagtaaaactcctc
attgaagggaacatgtcgcatgagtcatttgttaactcattaggaactggcgcaaatagc
gatgtcacgtccagaggggataacatcttagtgtatgtagctagttataatgaggttgac
agtctcagtaaaaagttaatagacaaaggacactctgtgacgaaagtggatggaaggacg
atgaaaatgggctcagttgaaattgcaacagttggcacctcgaagaagaagcactttatt
gttgcaacaaacataattgagaatggtgtcactttagatgtagatgttgtagtagatttt
ggtacgaaagtcgtaccgattttagacgttgataatagatgtgtaaggtacaataaaaca
tgtgttagctttggtgagaggatacaaaggctaggacgagttggtagaaacaaacctggt
acagcactgaggattggggcaactgaaaaaggactggtcgagataccagcaaaaattgca
acagaagcagccttcttgtgctttagctatgggttacctgtaatgacaaataatgtctca
acaagtttactcgcgaactgcacagttaggcaagcacgaataatgcagcaatttgaacta
gatcccttctacatgatcaatttagttcggtacgatgggtctatgcatccagcaattcat
gacattctcaaaaagttcaaactcagggattctgaaactcctcttaatactttcgccata
ccatacagtgatgtgccgaggtggctaacagtgagggattacaggaaggttggtgtcaac
gtgaacttggatgaaggcattcggatacctttctatgtcaaggatgtgcctgagaaagta
actcaaagcatatgggaggcagtcacaaattttaagaatgatgcacagataaaaccctta
tcttcagcatcagcagctaagattgcttacaccttaaagagagacatccattccatcccc
cgaactttacaaattcttgatggattaattcaaagtgaaatggagaggagagaacattac
ctggctctcacggcaaatagttgcagtggaacgaatttttcaataatgaatgttgtcaac
tctataaggtcgcgattcgtcacagaccactcagcagacaatattgaaaagttgagcaga
gctagggaccaaattagagagtataaaaacctccacaccgatgtatcagatcttgagact
ttaaaagcatatggatcactggaatgtgtgcagcaccaatctaaagatgcaatctcaaag
cacttaaggctaaaaggaatttggaataaatctctcatggtgagagatactttggtgtgt
gctggagtattcgttggaggagcatggatgttagcttcatggtatttctcaaagagtgga
gaaattgttgagcatcaaggttacaacaagagacagagacagaagttaagcttcagaaat
gctcgtgacgcaaaagtcgggagggaagtatatgcagatgacgacactatggaacattac
ttcggggaagcatacactaagaaaggcaagaatagtgggaaaacaagaggaatggggagc
aagaagcgacaattcacaacattttatggatgtgccccagatgatttttcactaattcgg
tatgtggacaccctcacagggcacactatcgatgcagacccacttgagccagcacataga
attcaaaaccagttctttgaccagagaatgaagctcatagcggaagacatgctggagccc
caacatctggacacagataaagcacaacacatagaagcgtacttgcaaaggaaaaacaca
acaaatgtgttaagagctgatttgagggcacatgttccaacacttgtttgcaaaaacggg
aacatagctggatacccagaacgggagaatgaaatgagacaaacaggagccttaagacaa
ggagttatgccagataagaacgaattccaagaattcaagcacgagagtaaagcactattt
aagggcctcagagattacaaccctatagccagcatcatttgtaaattgacaaacgattcc
tcagagatgcgacaaacgctatacggaattgggtatggaggattcatcatcacagtacag
cacttgttcaggcaaaacaacggcacattgtttgttcagactaggcaaggagaatttaca
gttaagaacacaacacagctcaaaatgtttccctgcttaggaagagatgttcttgtaatt
caaatgccaaaagagtttccaccgtttccacggaagttacagttcagaagtccaatcaag
aatgagagagttgtcatgataggtagcaattttcaacaaaagagcacctctagtacaatt
tctgatacgagccctattataccacgggagaattgccacttctggaaacatatgatcagc
actaaagacggggattgtggtttgccaatggtttcagtgaatgacggatgtatagtagga
gtgcatagtatgaccagtgtaacaagcacagccaattatttcactgactttccagaatca
ttaaagactgaggtcctggatagcccggaagcagttgattggataaagaattggaattac
aatgttaacactgtatgctatggaccaatgcacataatagagagtaaaccaacgggtatg
ttcaagccaaccaagttggtttcagatttaatgagagaaatggttgcagttcaaggagca
cagactaactggttgtatgatcagattgaaggaaatttgaaagccatagcacacgtgcca
aatcagctagtcacgaagcatgttgtcaaaggtaagtgcactttgtttgagacatactta
gcgacacacccagaagaagagaagacctttcaaccctacatgggagcttatgctaagagt
gcgttgaataaagccgcttacacgaaggatgtgatgaaatactcaacaactattacagtt
ggtacagtatccacggacaatttcgaaaaggcagtcaagagcttaatagcaaacatggaa
gagtggggtttcgacaagtgttcatatgtaacagatgaagaggcaatctttaacaatttg
aatatgaaagcggcggttggagctctctacagtggaaagaaaaaggactactttgcagac
tacagtgtccaagataaagagaccatagttgcggaaagttgcaaaaggttgtacatgggg
aagatgggtgtatggaatggtgcattgaaagctgaattaagacctattgaaaaagtgcaa
gcaaacaagacaagatcattcacagcagcacctatagatactctgctcggtggcaaagtg
tgcgtagacgattttaacaatcaattttattcgatgcacacgaaatgcccatggagtgtt
ggtatgacaaaattttatggcggttgggattcattactcaaatcattccctgacggatgg
gtttattgtgatgcagatggctcacaatttgatagctcactaacaccgtacatcatcaat
gcagtattgcaagtaagattacactttatggaagactgggatcttggggagcagatgctg
aagaatctgtatactgaaattgtttacaccccaattgcaacaccagatggcactgtgatt
aaaaagttcaaaggtaacaatagtggtcaaccatcaacagttgttgacaacacactcatg
gtaattatagctttatattactcacttcatgagttaggatatgagagatcccaattcgac
caagtttgtaaattcttcgtgaatggtgatgacttgatcatagcagtgaatccaagcgaa
gttcagatgctagatgagttacaatctttgttcaggcagttgggtctgaactatgacttt
tcatcgcgctcacgtgacataaaagagctatggtttatgtcacaccaaggaatggaacga
gagggaaaactcatacccaagttggagatagaaagaatcgtgtcaattcttgaatgggac
agatctacggaaccggagcatagattagaagcaatttgcgcatcaatggttgaagcatgg
gggtatgactggttgattcacgagatcaggaagttctatagttgggttttagaacaattc
ccatacaatgagttggccacacaaggaaaagcaccatacatagctgagactgccctgagg
aaattgtacttggatgttgatgctacagcggaagagctagaagcgtatggagacatattt
cagtgggaagatgaagatgaagagacggtttatcaccaagaagacaaagatgctgacaaa
gtaatgaatgctggaattggtgatcaaccaaaagataagggaaagaacactgaaactgat
gcaaacaagcaactttcagcaagcaaagataaagatgttaatgttggaactagcggaacc
ttcgcagttcccaagcttaaaggaatggcatcaaaaatgagattaccaaaggttagaggg
aaaacagttctaaatttagaacatttgatacagtacaatccagagcaaactgacttgtca
aatacaagatcaacccataaccaatttaacaattggtatgatggtgttaagaaggactac
gaacttaatgatgatcaaatggaaatcatattgaatggtctcatggtatggtgcatagag
aatggttgttctccaaacataaatggaatgtgggtgatgatggatggtgaggaacagata
gagtacccgataaaaccattaattgatcacgccaaacctacatttcgccaaataatggcc
catttcagtgacgccgctgaagcgtacattgaaaagagaaatgccgaaaaagcatacatg
cccagatatgggcttcagcgcaacttaaacgatccgagtcttgcacgttatgcattcgac
ttttacgagatgactgcaaagacaccaaatagagccagagaagcccacctgcagatgaag
gcggcggctctaagaaatgctagtaataagttatttggcatagatggaaaggtgagttca
caggaagaggacacggaaaggcacaccactgatgatgtgaatcggaacatgcatagcatg
cttggcgtgcgtactatgtaa
DBGET
integrated database retrieval system
