Viruses: 22921849
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Entry
22921849 CDS
T40000
Symbol
TH96_gp3
Name
(RefSeq) Rubus yellow net virus; polyprotein
Virus
198310
Rubus yellow net virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Caulimovir_coat_dom
RVT_1
RT_RNaseH
RVP
RT_RNaseH_2
zf-CCHC
RVT_3
zf-CCHC_2
MP
gag-asp_proteas
Asp_protease_2
Peptidase_A3B
Motif
Other DBs
NCBI-GeneID:
22921849
NCBI-ProteinID:
YP_009116631
RS:
NC_026238
UniProt:
A0A097DCZ5
LinkDB
All DBs
Position
NC_026238:1431..7361
Genome browser
AA seq
1976 aa
AA seq
DB search
MSRSHTRLQAPPATERATSSSDSGTPTLEDQIRGYRRSARMRHQAQQRLRRTFGRDFRNT
IERQLDPDAELSLSRRRRANLVPAEVLYAHNGQEPVNRVYEHYSELSAHVVDRQQDFRFI
EEASYQRLTREGMQFIHVGMAMVRIQMLHRTDAGISALVVFRDTRWSDDRQVIGSMSVDM
TRGAQLVYIIPNAMMSIHDFYNRIQVSIQTRGYGTGWEGGDSNMIITRSLVGRLTNTSIT
SFEYRIDNVTDYLASNGVACIPGQKWSVANRSGEWELQPSRIAAPLAVPTDARLRQNPNG
NISLRFTDFRDQRIVEEGETSEPEGRPETKEDESTHYVLMFKHSSPRWDTLGQPSGKYDY
MVRYDAPEPTTWPTTNRGWDDDPPKPPSPKGSYEVSLRGEKKLKEKELAEFTPETDLVSQ
WLNQLSNSAHNSGASSSDDEPKFDEADDEDDVYNQKTWEKEDQEKRELELQGWKPTGRPG
LYEMIPEQEEEVYLRYEAEDEEEDQELQVIGAATMDEPEMEYPTRLEKVMGKLKNVSMEK
LFPVSGMDSESSITGGGGGFIPPSPVPGAQGYPPATTSTMSTIGPADMQGWGGRVPRSRS
PLGYGRPQQPWSLPSAQSDNGCMLVLPQDFTLIPDVINRWESITVNLINKMMFDSLQDKA
DYVENLLGEREKETWMTWRMQYEEEYKQLLTMSGDVRNITAAVKRVFGVHDPHTGSVHIQ
NQAYAELERLYCKRTDDVIPFLYDYYQLAAKSGRMWLGPELSEKLFRKLPPEIGPTIEQA
YKDRYPGLTIGVLARANFILEYLQNVCKQAALQRSLKSLSFCRNMPVPGYYEKKQYGIRK
AKTYKGKPHPTHVKVIKNKYKHTQGKKCKCYLCGIEGHYARECPKKVVKPQRAAYFNGMG
LDDNWDVVSVEPGEEDDDEICSISEGENTGGMHELMAFKTQLPYPVEYEASTPQFLMPWT
QVPVEKSDKPSWRRRKDISQVQKDCTHTWSDTQEVPISDRVCSICSDETPHGRRVTCTTC
NINLCPICARMDYGIMLIAAKDTKSAAHWQYQNKDELIQHLYEHNAFLTRKVAELTSQLQ
EFHNRRPEDLISLADDLEDVSILDNASNRGKEEKELFQFGTTIPIDHIQNLENVAKIIEK
WKDTPRVVIKETPESSTSNTIGALLAEEGIEELAAAVDTAYTEMPKGGLNKLYNTIVEFV
IPQEKGAPTKFRVRAVIDTGCTCTCINSKKVPKEALEEAKYQMNFAGVNSTGETKLKMKN
GKMIVSGSDFYTPYIAAFPMELPDVDMLIGCNFLRAMKGGVRLEGTEVTIYKKVTTIQTT
LEPQKISLLRAEAEVGEELERMYYANDYSEEGISRLKNHRLLQELREQGYIGEEPMRHWA
KNGIKCKLDIKNPDIVISSKPPDSVSKETKAQYQRHIDALLKIGVIQPSKSKHRTAAFIT
HSGTSIDPITKKEVRGKERMVFDYRSLNDNTHKDQYTLPGINTIISAIGNAKIFSKFDLK
SGFHQVLMDEESIPWTAFVTPVGFYEWKVMPFGLANAPAVFQRKMDQCFAGTSEFIAVYI
DDILVFSKTLKEHEKHLSIMLGICRDNGLVLSPSKMKLAATEIDFLGATIGDGRIKLQPH
IIKKIAEVDDESLKTLKGLRSWLGVLNYARNYIPKCGTLLGPLYSKTSEHGDRRWHASDW
ALVKRIKGLVQNLPDLKLPTEEAYMIIETDGCMEGWGGVCKWKPMKADSASKEEICAYAS
GKFPTVKSTIDAEIFAVMESLEKFKIFYMNKDEVTIRTDCQAIITFYEKLNAKKPSRVRW
LAFCDYITNSGVRMKFEHIKGKDNQLADNLSRLTQLITFVKWLPTELKDLAAELTRKDDG
TPAKKEVQEEISCFLEAALRRAKRSVTTHQSEPRHVLWQKWQNPEGWLYCDERRSSTALP
NTSATRSSSPESTLRQQRPEQPGTTGMLTSHQHWNDEPPQHGSSWPLTRNSPRVRM
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagccacacaaggctccaagcgccccccgcaactgaaagggccacaagcagc
tcggattcagggacaccaaccctggaagaccagatccgaggatacaggagatctgcacgc
atgaggcatcaagcgcagcagagactacggaggaccttcggaagggacttcagaaacacg
atcgagagacaactcgatcctgatgcagagctctccctcagtcgaaggagaagagccaac
ttggtaccggcggaagtgctctacgcacacaacggacaagaaccggtcaaccgagtatac
gagcactacagtgagctcagcgctcatgtggtagacaggcagcaggacttccgatttata
gaggaagcgtcctatcaaaggctgaccagagaaggaatgcagttcatccacgtaggtatg
gcgatggtcaggatacaaatgctgcacaggacagatgcgggtatatccgcactagtggtg
ttccgagacacccgatggagcgatgacaggcaggtcatcggtagtatgtcagtcgatatg
acacgaggagcgcagttggtatacatcatacccaacgccatgatgtcgattcatgacttc
tacaaccggattcaggtcagcatacagaccagaggatacggcacaggctgggaaggaggc
gacagcaacatgattatcacaagatcattagtcggccgactcacaaacaccagcatcaca
agcttcgagtacaggatagacaacgtgacagactacctagccagcaacggcgtagcctgc
attcccggacagaagtggtccgtggcaaacaggtctggagaatgggaactccagccaagc
aggatagcagcaccacttgcagtccccacagatgccaggctaagacagaacccaaacggc
aacatcagcctgaggttcacggatttccgcgaccaaaggatcgtggaagaaggagagaca
tccgagccagaaggaagaccggagacgaaggaggatgagagcacgcactacgtgcttatg
ttcaaacactccagccctaggtgggatacgctcggacagcccagcggtaaatacgactac
atggtccgatatgacgcaccagaaccgaccacatggccaacaacaaacagaggatgggac
gatgaccctcctaagccaccaagcccaaaaggatcctacgaggtaagcctaagaggcgaa
aagaagctgaaagaaaaggaactcgcagagttcaccccagagacagatctggtcagccag
tggctaaaccaactctcgaactcggcacacaacagtggagcttcaagctcagacgatgag
ccaaagttcgatgaggcagacgacgaggacgacgtctacaatcagaaaacctgggagaag
gaagaccaggaaaagagggagctggaactccaagggtggaaacccacagggaggccaggc
ctctatgaaatgatccctgagcaagaagaagaagtctacctcaggtacgaggcagaggac
gaagaggaggatcaggagttgcaggtcataggagccgcaacaatggatgagccagagatg
gaatacccaaccaggctcgaaaaagtaatgggcaaactcaaaaacgtaagcatggagaag
ctgttcccagtgagcgggatggatagcgaatccagcataacaggaggtggtggaggtttt
ataccaccaagcccagtaccgggagcacaaggataccccccagcaacaacatccactatg
tccaccattggaccagcagacatgcagggatggggagggagagtgcccagaagtaggtca
ccattagggtatggcagaccacaacagccatggtcactaccatcagcacagtcagacaac
ggctgcatgctagtccttccacaggacttcaccctaataccggatgtcatcaaccgatgg
gaatccataacagtcaacctcatcaacaaaatgatgtttgactccctgcaggacaaggcc
gactacgtcgagaaccttcttggagaacgagaaaaggagacgtggatgacatggcggatg
caatatgaagaggagtataaacaactccttacgatgagcggagatgtgaggaatatcaca
gccgcagtcaagcgggtcttcggagtacacgatccgcatacaggatcagtccacatccag
aatcaagcatatgcagagctcgaaaggctctactgcaaacggacggacgacgtgatcccc
ttcctatacgactactatcagctagcagcaaaatcgggaaggatgtggctcggacccgag
ctatcagagaagctgttcagaaagcttccacctgagataggacctaccatcgagcaggcc
tataaggatcgatatccagggctgaccattggagttttggccagagcaaacttcatcctg
gaatatctacagaacgtgtgcaagcaggcagcactgcagcgttcgctaaaaagcctgagc
ttctgcaggaatatgccggtccccggatactatgagaagaagcaatatggtatcagaaag
gctaaaacctacaaaggtaagcctcatccgacccacgttaaggtgataaaaaacaagtac
aagcatacgcaggggaagaaatgcaagtgctacttgtgtgggatcgaaggtcactatgcc
cgagagtgcccaaagaaggtggtcaaaccacaacgagcggcctatttcaatggcatggga
ctagacgataactgggatgtagtctcggtcgaaccaggagaagaagacgacgacgagatc
tgcagcatctcagaaggagaaaacactggcggaatgcacgaacttatggcattcaaaaca
caactcccttatccagtggagtatgaagccagcacaccacagttcctgatgccatggaca
caggtacctgtggaaaagagcgacaaaccttcctggagaagacggaaggatatctcacaa
gtccagaaggactgcacacacacctggagtgacacccaggaagtgcctatcagcgacagg
gtttgcagcatctgtagtgacgaaacacctcacggtagaagagtcacctgcactacatgc
aacatcaacctctgtccgatatgtgcaaggatggactatgggatcatgctgatagcagca
aaagacaccaagagcgcagcacattggcagtaccaaaacaaggatgagctcatacagcac
ctgtacgaacacaacgcttttctcaccaggaaagtagcagagctcactagccagctgcag
gaattccacaaccgcaggcctgaagacctgatcagcctagcggatgacctggaggacgtg
tccatcctggacaacgcctcaaacagggggaaggaggagaaggaattgttccaatttgga
actacaattcccatcgaccacatacaaaaccttgaaaatgtggccaagatcatagaaaag
tggaaagatacccccagggtcgtaatcaaggaaacaccagaaagcagtaccagtaacacc
atcggagcacttctagctgaggaaggaatcgaagaactggctgcagcggttgacaccgcc
tataccgagatgccaaaaggaggcctcaacaaactttacaacacaattgtggagttcgtc
atacctcaggaaaagggagcacccacgaagttcagagttcgtgctgtgatagatactgga
tgcacctgcacgtgcattaacagtaaaaaggttcccaaggaggcactcgaagaagcgaag
taccagatgaacttcgcaggggttaactcaacaggggagaccaagctgaaaatgaagaac
gggaagatgatcgtgtcaggcagcgacttctacaccccgtatatagcagctttcccaatg
gagttgccagacgtagacatgctgattggctgcaacttcttgcgagccatgaagggaggc
gtaagactcgaaggaacggaagtgactatctacaagaaagtcaccacaatccaaacaacc
ctagagccacagaagatatccctcctccgagcagaggctgaagtcggagaagaactagag
cgcatgtactacgccaatgactattccgaggaaggaataagtcggctgaagaaccacagg
ctgctgcaggaactcagagaacaagggtacattggtgaagagccaatgagacactgggca
aagaacggcatcaaatgcaagctggatatcaagaatccagacatagtcatcagcagcaaa
ccgcctgactctgtatcaaaagagacgaaagcccaataccaaaggcatatagatgccctg
ctcaaaatcggagtaatccagcccagcaagagcaaacacaggacggcggcttttatcaca
cactcgggtacgtcaattgacccgattaccaagaaagaagtcagagggaaagaacggatg
gtattcgactaccgaagtctcaacgacaatacccacaaagatcagtacacactgccgggt
atcaataccatcatatccgcgattggcaacgctaaaatatttagcaagttcgatctaaag
tccggattccatcaggtgctcatggacgaagaatccataccatggacggctttcgtaacg
ccagtcggattctatgaatggaaggtcatgccctttggccttgccaatgctccagctgtc
ttccaaaggaagatggaccaatgcttcgctggaacttcggaattcatcgcagtctacatc
gatgacatcctggtgttcagcaaaaccctaaaggagcacgagaaacaccttagcatcatg
ctagggatatgccgtgataacggtttggttttatcgcccagcaaaatgaagttggccgcc
acagagatagacttccttggcgccaccataggcgatggaaggatcaagctccagcctcac
atcataaagaagatagccgaggtggatgacgaatccctgaaaaccctcaaagggttacga
agctggttgggagtgctcaactacgcgcgcaactacatcccaaagtgtggcacactgtta
ggcccactatacagcaagaccagcgagcatggtgatcgtaggtggcacgcgtctgattgg
gccttagtcaaaagaattaagggcctggtccaaaacctcccagacctaaaactccccacg
gaagaggcatacatgatcattgagactgatggatgcatggagggctggggaggagtctgc
aaatggaagcccatgaaggcagactcagcaagcaaggaagaaatctgcgcttacgccagt
ggtaaattccccacggtaaaatcaacaatagacgcagaaatcttcgcagttatggagtcc
ttggaaaaattcaagattttttacatgaacaaggacgaggtcactatcaggactgattgt
caagcaataatcaccttctacgagaagctgaatgcaaagaaaccttcgagggtaaggtgg
cttgccttttgcgattatataacgaactccggggtaagaatgaagttcgaacatataaaa
ggtaaagacaaccagctcgcagataacctcagccgtctcacacaactgattacatttgtg
aaatggcttccaaccgagctcaaggacctcgcggcagaactaaccaggaaagacgacggg
acgcccgcgaagaaggaagtgcaggaggaaatctcctgttttctcgaagctgccctccgc
cgagccaagagatccgtgactactcaccaatccgagccacgccatgtactatggcagaaa
tggcagaatccagaaggctggctctactgcgacgagaggagatcttcaacagccttgccc
aacacatcagcgacacggtcttcatcaccggagtcgaccttgcggcagcaaaggccagag
caaccagggacaactggtatgctgacatcacaccaacactggaacgacgagccaccgcag
catggaagctcatggccgcttacgaggaattcgccacgtgtaaggatgtga
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