Viruses: 27964209 Help Entry 27964209          CDS       T40000                                  Symbol A9P86_gp1 Name (RefSeq) Culiseta flavivirus; polyprotein   KO K24570   Flavivirus structral polyprotein Virus 1821222  Culiseta flavivirus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Flavi_NS5 Flavi_NS5_thumb Flavi_DEAD Flavi_NS1 FtsJ Peptidase_S7 Helicase_C DEAD Flavi_glycoprot ResIII RdRP_1 Flavi_propep Cas3-like_C_2 Methyltransf_23 Motif Other DBs NCBI-GeneID:  27964209 NCBI-ProteinID:  YP_009256193 RS:  NC_030290 UniProt:  A0A142K0N4 LinkDB All DBs Position NC_030290:92..10282 Genome browser AA seq 3396 aa AA seqDB search MKKVTQSKKGNTLGGGGKRGTQMMGPQTKQNGNKNERRPSRSILKMDIGKALELALAMLI SMVRGLIARVSQLETRVGRLERKKTRSARSTLPFLTLISLTCGLTLTYSPGKYGDQLIGG GKNYTGIMHQFKLPGDMCHEGIHVEKHCPQVTSLDAVDKIDCASVYTEFVLAYERCEHLK RHRRNAPSAPVATGGIKDKIADVESLVTKWLQENKLTMTVVVVATGIVLKWPLWIVAIMV ITCWGTTLAEHAEPFLIMDGREQTMVRTQLYPHGSIAIMTRAGLFEIKAGAFSVSEGQGV KTLLSECHVNATYSTDCCPMGCDIDMEKLNLVGRVCTERSIQRGWASGCLEFGMGAVATC VEVACSHQLKVSSFGEKNIKVNVTGYFHSETVNVTLIPSAGRNMVFGELGSAIIICNLGM SDTLNTYVVSGEKHKVLLPKGTIDVWTGLFRVGSETHGAETAVLWGRATPTEVKVKAILD PKISWEEGVNVEKGLSDGLFLNCDIVVDKLLVDTTRKCDQVADISFTQNQIGTGGRVQVT LQAPASAECVVNLSCEGCELTSPIVFFSEHSKTSATALACEAPVASIKADKKVVNVKCKV SRMISAWNTLLHTTERYQRYGIEGVKHSVWDLMGGFNLGRLSSWWAQIAIALIALTFLVD KRIIVLGLLGGYFVYANADFGCGVDTQRKTFTCGNGLFVFRDLFSWPTSEQHVEIDNYGL FESYIENMFVKYDKVCILCEDNLQCAAARAAAEDYGYNHVDIHYNVSLSYHRYFPAIEKS IVKVKIGDVETQLAVQEQDHDVDSSALGTLRKPMWQYANKAENVTDKVLRVVSSGHATEK VCQRSVAFQYDFTAFKRRAWGSSLGVAISSVMRRTCPMYLAGLVVKNNQTIYTDGSLWMM SEYDGENYTISELNLYQSHQCIWPPRFTADKWAHDDKRLFVPPGWGAPQSAANYIPGYIS QTNFPWDKYPVEMVKGPVPGTTVEMTPHCKGRGKALKVEAKAFSKWCCETCLEQGNIFHF RVGTDLYYPMEIRTLEAADAKKPTVTIEEEVIATVSEDDVQNELPKTWNEGFSQSYAQAS HMNQDFRIGQADHLSRILVLSIGLMCLTARTRRKWMFRATGTWLILLFIGLPLLSDWHAW GWLALSQGLAGHTGYTMWMCHLWMAIQTGTGHVWFLAMMWRRKLWATLEVKCFVMILQWA HAAVIQHLGLIGTLFDIGLLIVTGLAMSTASENMGFHEWLISLILLVSSWQIAMYSTCAV LVILLGQASWRLLTSSSTGWKSGLRSVARPSGNFHHTNAWSCLWNGSRLTLGFLLARCLV FLPVSTDLITPGCAPFLVVAFSIYFTTHIRSQERGGINWFQQSKFVAASGVIIAAVWLLE RAQRPELAVLIFVLAGCCWAFFGLTAKVSLELIQIPGDACEHGEPKDVDLGDVTGTRGPH GVQILGVDDVGSTTVNVYAFVGLLGVFAINWPAGLVGVLWYVASGSNRFIPALIDSIFRW NLRSDVSTDFFQTNSFEEEQLQVHATFDYLPQGAYYIHSVTQFSSTICGSGFAKEGVFHT LYHVTQGNPLKWRGKYVSMSGGSVIRDTACYGGAWKLQFEDSETYTIKACLPDGTVQFDT YKRKIMKVDGEDVPVIPYDYGNGSSGSPIFSQGGEAVGLYGFGFYMHDRYISLITTDVVS AEAESIMPRESVGRVFIDWHPGRGKTRRVVVEEAKSAMLGNHRILVLTPTRVVKNEVLKV LREKLPDMRLGDAIGHTMNTVTVACHATFTQRAFSSGLKNLKYSTIIMDECHYLDPMSIA ARGVMEALHQRNTRLVYMSATIPGRPPTTGSNYEISVEITRFPVELNAQFVSNHAGAKTV VFVPTKRECDKLHAATPQSISLHSETFEENAPKAMRDNIRVIFTTDISEMGANFNVDTVI DTRTTIKPVLAGENQVALVKVGAPLSSRIQRQGRTGRRASGRYVMPVLDPPPSDCLNWIC WMEAQMILDQIACGPMPEEATFFNVPGSYTLPDRERRLFLELSEKPVTYWLAWHWVQNLH DVDTIIFKGEHDGELRISTSHGMRHYKPKFVDRRFEDAPDDMKVASITKLLKCRSTSIMD FYNALSYFFTSGAAQAKFFEILESMYVVSRLDEDDVPAVTKDRMVTVLMAVSMGSVGMLL LWFMFCILRSMGSMLLRSKNAQTVVTDEIPKAWGTMWALASYHLGVPFAIIFVIGGAVSL IRIVAGNNTTRSIEYAVITRFIITGMVFVLGLICWEKELTPTIRRDLTHMFSTVSGGSLP IDATAKPVWNLPTWGHEFLLNAYVVIVGLNQIVLTFLENNIAKQFMGDMGRASAIGGIQL STLPMYAIVPLLPAAIFGTTHVAKILGWVAGFFVLLIFMAEHRFKMSEKVLSNFNAEKQK REVESLLGREQRDRRKNVFAGIMAALSIMWAFLVQDWAAFLVCTAVCLHSIWVVRDPKNP NHAHFELGHILLIFGVARMQDTTLYVSCLLLRCLSGGLAKSLHGPGLNSINKTPVGGMGY SWKRELNKKSQEDFNTYRSRGVNETDKGDYVSRGGLKMEELINKFGWEPKGRVVDLGCGR GGWTQRLVADKRVTKVNAYTLGGQERENPQPFTTTGYNLATFKTGVNVYTMERQNVNTIV CDIGESDAKPEIELSRTIKVLNLLEEWLEVNPQAAFVCKVLSPYHTDVLRKIETLQHKYN GRLVRVSHSRNSTAEMYYISGIRQSPVASTYAVLAVLGRRFTVDDPVFKTDPPKLAKGTR SDPSSKIKSLDDSKVTTRIRRLKDENARTWFFDDENPYNSFKYFGSFVTDTRSAGGQTVN PMIRRVMWPWEELKKTTSYMMTDVSTYAQQKVLREKVDTLTEEPPANIKRVNRLIMKHFV KMFKEKRLRPRILSSREYAENVQSHAAIGAWSKEIPWKNVADALSDSNFWDMVDRERTKH LAGDCEMCIYNTMGKKEKKPTVAGLAKGSRTIWYMWLGSRFLEYEALGFLNEDHWVAREN FPCGVGGEGVNYFGYYLEDIAKRGKYLVADDVAGWDTRITQADLDDEEFFILELIDDPYH RKLVQSLFTFAYKHVVALFPRDHPKYASGTVMDVVVRTDQRGSGQVITYAMNTITNAKTL VGRSMEANGVLDASDKEIDAWLKEWCLDFLQRSVIAGDDAVVATNNPKFMTSLQYITLAG KIRKDIGLNAPSRFSTNWEEVEFCSHHYHKLHMKDGRDLIGPCRDQFEVIGRSRIQKGGV VSLGDSACLAKAYSQMWALYFFHRRDLRLGFAAVNSCVPSEWMPTGRTTWSLHHGSDWMT TEDMLSVWNRVWILDNKWMLDKTLVTSWSDVPYLHKKQDILCGSQIGTHARSVWARDLES HIEKIRKTVVLENGHQEFPDALNIFTRYAKPELSLF NT seq 10191 nt NT seq  +upstreamnt  +downstreamnt atgaaaaaggtgactcaaagtaagaagggaaataccctgggaggaggaggaaaacgcggt acccaaatgatggggccgcaaacaaaacaaaacggaaacaagaatgaacggcggccaagc cgttccattttaaaaatggacatcggaaaggcgctggaactggctttggccatgctcatt agcatggttagaggcttaattgcacgagtatcgcaactggaaacacgagtaggacgactc gaaagaaagaagactcgatcagctagatcaacgctgccattcctgaccctgatctctcta acatgtggcctgacgctaacgtattcgccaggaaagtatggagaccaactcattggaggt gggaaaaattacaccggcattatgcaccaattcaagctgcccggagatatgtgccatgaa gggattcatgtagaaaaacactgccctcaagtaaccagtctagacgccgttgacaagatc gactgcgcctcagtatatactgagtttgttctggcatacgagagatgtgaacatctaaaa cgccatcgccgtaatgctccgtctgcccctgttgcgacaggaggtataaaagacaaaatt gctgatgtggaatcgttggtaacaaagtggttacaagaaaacaagttaacaatgactgtt gtggttgtagcaaccggaattgttctaaaatggcctctgtggatcgtcgccataatggtc atcacatgttgggggacgactcttgcagaacatgcagagccatttttaataatggatgga cgagaacaaacaatggttcggacacagctttacccgcacggatccatagcgatcatgaca cgtgccggactgttcgaaataaaagccggagctttctcagtgtcagagggacaaggagtg aaaactttgttatctgaatgccatgttaatgcgacgtactcaacggactgttgtcccatg ggatgtgacattgatatggagaagttgaacttagtaggacgggtgtgtactgaacgttcc atccaacgtggatgggcatctggctgtctcgagtttggaatgggagccgtggcgacctgt gtcgaagtggcgtgttcacaccaactcaaagtgtcaagctttggagaaaagaacatcaaa gtcaatgttacgggatatttccatagcgaaaccgtgaatgtgacgttgataccatcggct ggacggaacatggtttttggagagctgggttcagctatcattatatgtaaccttggaatg tcagacacgctgaacacgtacgtcgtctcaggagagaaacacaaggttcttttaccaaaa ggaacaattgatgtttggactggactttttcgcgttggttctgagactcacggagcagaa actgctgtgctctggggtagagcgaccccaacggaagtcaaagtaaaggcgatcctcgac ccgaaaatatcttgggaagagggagtgaacgtggaaaaaggattatcagatggactattc ctgaattgcgatatcgtggtcgataaactgcttgtcgacacgaccagaaaatgtgaccag gttgccgacatttcatttacccagaaccaaattggaactggagggcgagttcaagtaacg ctacaagcccctgcttccgcagaatgtgtggtcaacctttcctgcgaaggatgtgagttg acctctcctatcgtgttcttttctgaacactcgaagacatctgccacggctcttgcttgt gaagcccctgtggctagcatcaaagcggacaaaaaagtcgtgaacgtaaaatgcaaggtt tcccgcatgatttctgcatggaacacactgttacacacaactgagcggtaccagaggtat ggcatagagggagtgaaacactccgtgtgggatctcatgggagggttcaacctcggtcga ctgtctagctggtgggctcaaattgcgattgcattaatagccctgacctttttggttgac aaacggatcatcgttttagggctacttggaggatacttcgtgtacgcaaatgcggatttt ggatgcggtgtggacacacaacggaaaactttcacttgtggaaacgggttgtttgttttt cgagatttattcagctggccgacgtccgaacaacatgtagagattgacaattatggtctt tttgaaagctacattgaaaatatgttcgtgaagtacgacaaggtctgcatattatgtgag gacaatctacaatgcgcggcggctcgtgcagctgctgaggattatgggtacaaccacgtt gatatccattacaacgtctcattgtcttaccaccggtactttccagctattgagaagtcg atagtgaaagtgaagatcggcgatgtggagacccagctagccgtccaggaacaggaccat gatgtggactcgagtgctctgggaacattgcgaaagccaatgtggcagtatgccaacaag gctgagaacgtgactgacaaagtcctacgagttgtatcgagtggacatgccactgagaaa gtgtgtcaacgatcagtcgccttccagtacgatttcacagcgtttaaaaggagagcctgg ggatcatcactgggagttgccatatcatcagtcatgcgaaggacctgtcccatgtatttg gccgggttggttgtaaagaacaaccagactatttacacggatgggagtttgtggatgatg agcgagtacgacggagaaaactacaccattagtgaattgaatttgtaccaatcacaccaa tgcatctggcctcctcgatttaccgctgacaaatgggcccatgacgacaaaaggttgttc gttccacctggatggggggctccccaatcggcagctaattatatccccggatatattagc caaacgaactttccctgggacaagtacccagtcgaaatggtaaagggaccagtccctgga acaaccgttgaaatgacgccacactgcaaagggcgaggaaaagccctcaaggttgaggca aaggcattctcaaaatggtgctgtgaaacctgccttgagcagggaaacatcttccatttc cgtgttggtacagacttgtactaccccatggaaatccgcacgctagaggctgctgatgcc aagaaaccaaccgtgacgattgaagaagaagttatagctactgtcagtgaagacgacgtg caaaatgaacttccaaaaacctggaatgaaggtttttcgcaatcatacgcacaggccagc catatgaaccaggattttcggataggccaagcggaccacttgagccgcatcctggtctta tctataggtttgatgtgcctgactgcccgaacccgcaggaagtggatgttcagggctacg ggaacctggctcatcttgttattcattggattaccgctcttgtcggattggcatgcatgg gggtggcttgctttgtcgcaggggctcgccggacacacaggatatactatgtggatgtgc catctgtggatggcgattcagaccggaacgggccacgtgtggttcttggcaatgatgtgg cgacgcaagttgtgggcgaccctggaagtgaaatgcttcgtgatgattctccagtgggct cacgccgcagtaattcaacacctcggactgatcgggacactattcgacataggactccta atcgtgacagggcttgcgatgtccactgcctcggagaacatggggttccacgaatggtta atctcgttaattctcttggtttcatcgtggcaaatagccatgtattcaacgtgtgcagtc ttagtgattcttctcggccaggcttcttggcggttactaacctcgtcctcgacaggatgg aagagtggattgcgcagtgtagcgcggccgtctgggaacttccaccataccaacgcttgg tcttgtctgtggaatggcagtcggctcacacttggtttcttgttggcgcgctgtctggta tttctaccagtgtcgaccgatttgatcacccctggttgcgctcctttcctcgtagtagcg ttctcgatttactttacaacgcacatcagatcacaagagcgtggagggatcaattggttt cagcagagcaaattcgtggccgcgtcaggtgttatcatcgcggccgtttggctgctcgaa cgagctcagcgtcctgaattagctgtcttgatcttcgtcttggctggttgctgttgggcc ttctttggactaactgcaaaagtcagtttggaactaatccagatacctggagacgcatgt gaacatggtgagccaaaggacgttgatttaggcgatgtaaccggaacgcgtggaccccac ggagtacaaattttgggcgttgacgacgttggctcgacaactgtgaatgtttatgcattc gtcggattgctgggagtgtttgccatcaactggcctgcgggactcgttggagttctttgg tatgtagctagtggctcaaaccgtttcatcccagcgcttattgactctatcttccggtgg aatttaagaagtgatgtctcaactgacttctttcagacaaattcctttgaagaggaacag ttgcaagtccatgccaccttcgattacttaccccaaggagcatactacatccacagcgtg actcaattctcgtctacaatatgcgggtctggattcgcaaaagagggtgtgtttcacaca ctgtaccacgtgacgcagggtaatcccttgaaatggcgaggaaaatatgtgagtatgtca ggcgggtcggtcatccgtgacacagcgtgttatggaggagcgtggaaactgcaatttgaa gactccgaaacatacaccatcaaagcttgtctaccggacggaacagtgcaatttgacact tacaaacggaaaatcatgaaagtcgatggagaggacgttccagtcattccgtacgattat ggaaatggatcgtctgggtctccaatattttcgcaaggaggtgaagctgttggcttatac ggatttgggttttacatgcacgatagatacatatcgctcataacgacagatgtggtttcg gctgaagcagagtctatcatgcctagagaatctgtaggacgggtattcatagattggcat cctggtcgtggcaagactcgaagagttgtcgtcgaagaggctaagtctgccatgcttgga aatcaccggattttggttttaaccccgacgcgagtggtaaagaatgaagtgttgaaggtg ttacgtgaaaaattaccggacatgagactaggtgatgcaattggtcacacaatgaacacg gtgacggttgcatgccatgctacattcacacaacgagcgttttcttcaggattaaaaaat cttaagtattcaacaatcattatggatgagtgtcattacctggatccaatgtccatagcg gctcgtggcgtgatggaggctctgcaccagcgcaacacgcgcctagtctacatgagcgcc acaatacctggcagaccaccaactaccggctccaactacgagattagtgtggaaatcact cgatttcctgtggagttaaatgcgcaatttgtgtcgaaccacgctggggcaaagacagta gtttttgttccaacaaaacgagaatgtgacaaactgcatgcggcaacaccccaaagcata tcactacacagtgaaacttttgaggagaacgcaccaaaggcaatgcgtgataacattcga gttattttcacgaccgatataagcgagatgggggcaaatttcaatgtggacactgtgata gacacgaggaccactatcaaacccgttctagcgggtgaaaatcaagtggccctggttaaa gtcggagcaccactgtcttcacgaatccaacgccaaggaagaactggaagaagagcgagt gggagatatgtgatgcctgttttggaccctcctccatctgactgtctgaattggatttgt tggatggaagctcaaatgatactggaccaaattgcatgtggaccgatgccagaggaagcg acattctttaatgttcctggttcatacacactccctgaccgtgagcgccggttgttcttg gagttatccgagaaacctgtcacatactggttggcgtggcattgggtgcaaaatttacat gacgttgacaccatcatcttcaaaggtgaacacgatggagaattgcggatcagcacgagc cacgggatgcgacattacaaaccgaaatttgtggatagaaggtttgaagacgcccctgat gatatgaaagttgcctccattaccaagctgctaaagtgccgaagcacgtcaatcatggat ttttataatgcgttgtcgtatttcttcacttctggcgcggcacaagcaaaattcttcgag atactcgagagtatgtacgttgtgtcgcggttggatgaggatgatgtacccgccgtcaca aaagatcgcatggttaccgtgctcatggctgtgagcatgggaagtgttggcatgttgcta ctctggttcatgttttgcattctcagatctatgggatcgatgttgttacgtagcaaaaac gcccaaaccgttgttactgatgagattccaaaagcctggggtacaatgtgggcgctagcg agttaccatttaggcgttccatttgcgatcatattcgtgattggaggcgccgtgagtttg attcgcatagtagctgggaacaacacaacccgtagtattgagtacgcagtcataaccaga tttatcatcactggtatggtgtttgttctaggcctgatttgttgggaaaaagaacttaca cccacaattagacgagacttaactcacatgttcagcacagtatcaggtgggtccttgccc attgatgccactgctaaaccggtgtggaacttgccaacatggggacacgaatttttacta aatgcgtatgtggtcattgtaggtctaaaccagatcgtgttgactttcctggaaaataac atcgcaaaacagttcatgggcgacatgggtagggcttctgcaattggaggaatccagctg tcgactctccccatgtatgccatcgtgcctctcctgccagctgctatcttcggaaccact cacgtcgccaaaatattaggttgggttgcaggtttcttcgttctgctcatttttatggct gagcataggttcaaaatgtcagaaaaggttctcagtaactttaacgctgagaagcaaaag agagaagttgaatctttgcttggacgcgaacaaagagatcgtcgcaagaacgtatttgcg gggatcatggcagctctgtcgattatgtgggctttcttagtacaggactgggccgctttt ctggtgtgcacagctgtttgcttacattcaatttgggttgtgagagacccgaagaatcca aaccacgcgcattttgaactcggccacatactcctcatttttggagttgctcgaatgcag gacaccacactttatgtgtcatgcctgcttctccgatgcttgagtggaggattggcaaaa agtttgcatggaccaggactaaactccatcaacaagactccagtcggcggcatgggctat agttggaaacgagagctcaacaagaagagccaagaagatttcaacacgtacagatctcgt ggagtgaatgaaaccgacaaaggggactatgtctctcgtggagggttaaaaatggaagag ctcatcaacaaatttggttgggagccaaaaggacgtgttgtggatctgggatgtggccgc ggtggctggactcagcggcttgttgctgacaagagagtgacaaaagtaaatgcatacact ctcggtggtcaagaaagagagaatcctcaaccatttaccacgacaggatacaacttggct acgttcaaaaccggagtgaatgtttacactatggagcgacagaatgtaaacaccattgtg tgcgacattggagaaagcgacgcaaagccagagattgagcttagtcgaacaataaaagtc cttaacctcctggaagagtggctggaggtgaacccccaagcagcttttgtgtgcaaggtg ttgtctccgtaccacactgatgtgctccggaagattgagacactgcagcacaagtacaat ggacgacttgtccgggtctcccacagtaggaactcaactgctgagatgtactacatctct ggaatccgacagagcccggtcgcttccacgtacgcggtgctagccgtgttggggagacgt ttcaccgttgacgatcctgtattcaaaacagatcctccgaaactagccaagggcacacga agtgacccctcatctaagataaagagcctagatgactcgaaggtgacgacccgcattcgc aggttaaaagatgagaatgcaaggacgtggttttttgatgatgagaatccatacaacagt ttcaagtactttggttcatttgtaactgacaccagatcagctggaggacaaactgtaaat ccaatgatccgacgagtaatgtggccatgggaggaattgaagaaaacgacctcatacatg atgacggatgtttcaacctacgcacagcagaaagtactacgagaaaaggtggacactttg accgaggaacctccagcgaacataaagagagtcaatcgtctcataatgaaacactttgta aaaatgtttaaggagaagagacttcggccacgcattttatcatctcgagaatatgcggag aacgtccagagtcacgctgccataggtgcctggagcaaagagattccttggaaaaatgtc gctgacgcactatctgactcaaatttctgggacatggttgatagagagcgaacaaaacat ctggccggagattgtgagatgtgtatttataataccatggggaaaaaagagaaaaagcca accgtggctggtttggctaaaggatcaagaacaatttggtacatgtggcttggaagtcgt ttcctcgagtacgaggctctagggttcctcaatgaagatcattgggtagcccgcgagaac ttcccctgtggcgtagggggagaaggagtcaactactttggctattacctcgaggacata gcgaagcgaggtaagtacttagtcgccgatgatgtggccggatgggacactcggatcacg caagcggatttggacgatgaagagttcttcatcttagaactcatagatgatccgtaccac aggaaactcgtccagtccttgttcacattcgcatacaaacatgtggtggctctgtttcca agggaccatccaaagtacgcgagcggaactgtgatggatgtcgttgtccgtactgatcaa cgcggatcaggccaagtgataacgtatgccatgaatacaataacgaacgcaaaaactctt gtgggaagatccatggaagccaatggagtactagacgcttcggacaaagagattgatgct tggctcaaagagtggtgtctagactttctccagcggtctgtgattgccggagatgacgcc gtggttgccactaataatccaaaatttatgacatcgctacagtacataacattggcagga aaaatacgaaaggacataggtctcaacgccccttcacgattctcaacgaattgggaggaa gttgagttttgttcgcaccactaccacaaactacacatgaaagatggtagagatttgatc ggcccatgtcgggatcaatttgaagtcattggccgtagtaggattcaaaaaggaggggtt gtctcattgggagatagcgcttgcttggcaaaggcttactctcagatgtgggcactgtat ttcttccacagacgtgacttacgacttggtttcgcggcagtcaattcatgtgttcctagt gagtggatgccaactggccgaaccacatggtctttacaccatgggagcgattggatgact actgaggacatgctctcagtgtggaaccgagtgtggattttggacaacaagtggatgttg gataaaactctagtgacatcctggagtgacgttccgtatctgcacaaaaaacaagacata ttatgtggaagccagattggaacacacgcaagatctgtttgggctcgagatcttgaatcc cacattgaaaaaattagaaaaacagtggtgttagaaaatgggcatcaggaatttcccgat gctctgaacatattcaccagatacgcaaaaccagagttgtctctcttctag

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