Viruses: 28378533
Help
Entry
28378533 CDS
T40000
Symbol
74, BEN60_gp133
Name
(RefSeq) Gordonia phage Smoothie; tRNA splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Virus
1838078
Gordonia phage Smoothie
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RtcB
RE_endonuc
Motif
Other DBs
NCBI-GeneID:
28378533
NCBI-ProteinID:
YP_009269187
RS:
NC_030696
UniProt:
A0A160DED2
LinkDB
All DBs
Position
NC_030696:47387..48604
Genome browser
AA seq
405 aa
AA seq
DB search
MPEMIAPKVLNYASILDDMTTQQAGEISSLPFIHPHVALMPDAHGGKGSAVGTVIPTVDA
VIPAAVGVDIGCGMIGVETWVQKSDIADLSLADLRERVEIAIPLSPGNYNVDGRWAEHTE
GRIARLEAMAEEKGVDLKHSPKWREQLGSLGGGNHFIELCESVYNQGPGEIWLFLHSGSR
GVGNKIAQKHIKIAQKLCKKWHIQLANPDLAYLPSGTDEFGDYIRELRWAQAFALENRAE
MMDRFVHVFTRWLEYSDAVEFDELGRDVELRRINCHHNYTERVEIAGKKVWLTRKGAIDA
SEGRYGLIPGSMGTKSYVVRGKGNESGLFSAPHGAGRQYSRTQAKKLFTLDDLADRMKGI
EYRHGEEWIDEIPDAYKDIDQVMEDAKDLVEVEAVLSQLMNVKGV
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaatgatcgcacccaaggtgcttaactacgcatcgatcctcgacgacatgacc
acacaacaggccggcgagatctcgtcgctgccgttcattcaccctcacgtcgccctgatg
ccggatgcacacggcggcaaaggatctgccgttggcacggtgattcccaccgtggatgcc
gtgatcccggccgcggtcggcgtggacatcggctgcggcatgatcggcgtcgaaacctgg
gtgcagaagagcgacatcgcagacctcagcctcgcggacctgcgtgagcgcgtcgagatc
gccatcccgctctccccagggaactacaacgtcgatgggcgctgggccgagcacaccgag
gggcgcatcgcacgcctggaggcaatggccgaggagaagggggtcgacctcaagcactcg
ccgaagtggcgcgagcagctgggttcactgggtggtggcaaccacttcatcgagctgtgc
gagtccgtgtacaaccagggcccgggtgagatctggctgttcctccactcggggtcgcgc
ggcgtcggcaacaagatcgcgcagaagcacatcaagatcgcccagaagctgtgcaagaag
tggcacatccagctcgccaaccccgacctggcctacctgccgtccgggaccgacgaattc
ggcgactacattcgcgagctccggtgggcacaggctttcgcgctcgagaaccgggccgaa
atgatggaccgtttcgtccatgtgttcacccggtggctcgagtactccgatgccgtcgaa
ttcgacgagctcggtcgcgacgtcgaactccggcgtatcaattgtcaccacaactacacc
gagcgggtcgagatcgccggcaagaaagtgtggctcacgcgcaagggtgcaatcgacgca
agcgagggtcgatatggactgatccccggatccatgggcaccaagtcctatgtcgtccgc
ggcaaagggaatgagtccggcctcttctctgcgccccatggtgccggccgtcagtattcg
cgcacccaggccaagaagctgttcaccctggatgacctcgccgaccgaatgaagggcatc
gaataccgccacggcgaagagtggatcgacgagatcccggacgcctacaaggacatcgac
caggtgatggaagatgccaaagacctggtcgaagtcgaggcagtgctgtcccagctcatg
aacgtgaaaggtgtctga
DBGET
integrated database retrieval system
