Viruses: 28480548 Help Entry 28480548          CDS       T40000                                  Symbol BFS45_gp1 Name (RefSeq) Senna mosaic virus; RdRp   KO K26615   Alphaflexiviridae RNA-directed RNA polymerase Virus 1881013  Senna mosaic virus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Vmethyltransf Viral_helicase1 RdRP_2 2OG-FeII_Oxy 2OG-FeII_Oxy_2 AAA_14 Motif Other DBs NCBI-GeneID:  28480548 NCBI-ProteinID:  YP_009270630 RS:  NC_030746 UniProt:  A0A1B1V3I5 LinkDB All DBs Position NC_030746:106..4725 Genome browser AA seq 1539 aa AA seqDB search MANLRNVLDQLNDPSLRAVIQEEAYREIRKSLEETKAYNPYAQALPAADSLEKMGILTNP LAVRAHTHAAAKSIELNMYSIVATYLPKENPVTFMFMKRAKLQYFRRGPQHNDIFLNAHI EPKDVARYPLGELFDPHRTPKIQTSTAFMGDALHYMEPEVIPKLFTTSDTLQSLYATLVL PPEAMHRMHSLHPSIYELEFHKEHFLYKPGGSSGAAYVHTYNQLVWLKIGRFKWKDDQGR SWVVTAQVLETKGANHLMLFQRGNLLTPELRSFGVETKFITIPPIFLPEKYNARLPIKKN CAQQLFLYVKSVKGVTERDIWAKIRQLIKTSELQDYSAKELTLLVNYFYLISRLKSENCF QDVLSGGIINRLCKPLIAWYQELKMKMLGKEEFVQLMEALEWVDVNLTYEVFDFEFGSTY KDLSNGRNWLHGEDLPEKAEEPEDQEPSDPDWYQKYIQLLENTNSRVGGQEQGSQSSQSG VTEDEEAKPGNETPGETGTDSLGAPENSESSGKKNTTLQCPCGLELPIAEANFPEIPVLE HPDRLKGRLAYFFSKDNKPYSYTGGSHASRGWPNWLDSILATVGKSMMLPEFNQCLVQKY ERGASIPFHRDNEPCYPKGHQVLTINLEGQAEFSVSCKSGNATTRMEKGTYFLSPPGFQE SHQHAVKSLSASRISLTFRCTQIQNVFGEGLSSEVIDQLPWKAWLEKIRHLGFQGTSLQY DYNGALISPIERVQSLPKVFPKGAPGDLLSTLDKWSRAPTPYCPSKLRAKAYSSDVKNLR VGALLRQQGKEWAMRFDSLVESGERELAISVIHGAGGSGKSKLLQCYIQDNPETNITIVL PTNELRIDWLKKLKEVRESKFKTFEKALLSPPTPVVIFDDYGKLPAGYIEAFCLYFSTVE LIILTGDSKQSVHHEPNENAMTSQLEPFVWEAEKFCRYYINATHRNKRDLANRFGVYSEV TGVTEITHGSTPIPGRHMLVPSIYKKLAFTEMGHKVSTYAGCQGITAPSVQILLTEETAL CSKEVMYTALSRAVHSIHFINTSPNNKAFWSKLECTPYLKAFLSTLREETAVEDKPKGAE PTPVEPPKTHIAKDSAMPIYENIIEEMPEKHEREIFSNSHGHSNCVQTEDPFIQMFSHQQ AKDETLLWATIEARLKISNPKANWQEYLEKKPVGDVLFESYRQAMKLPDQPIPFSEELWE SCMHEVQATYLKKPEVMIKNGMGRQSPDYDPHVISLFLKSQWVKKMEKLGAVKIKPGQTI ASFHQATVMLFGTMARYMRRMREVFQPRNIKINCETTPEELTEWLAPDRGGWTFKGPSLA NDYTAFDQSQDGAMLQFEILKAKHHSIPEDVLNAYLDIKLNSKIFLGVLSIMRLTGEGPT FDANTECNIAFTHTKFQIPEGTAQIYAGDDSAIDAVPPIRPSFKLVEQKLTLRSKPVVAM QERGDWAEFCGYRITKFGFIKDPKKLHASLMLEIKRGNLKNVKDSYEIDLGLAYYHKDRL HEIMSEEELRCHYETVRTLVRSGGGKWLKTFISKDESLY NT seq 4620 nt NT seq  +upstreamnt  +downstreamnt atggccaatttgaggaacgtcctagatcaacttaacgatccatcacttagggcagtgatc caggaagaagcataccgggaaatacggaaaagcctggaagagaccaaagcctacaaccct tatgcacaggccctgccggctgcagattcattagaaaaaatgggaattttgacaaatccc ttggcagtcagggcacacacacatgcggccgcaaagagtatagaactaaatatgtacagt atagtagcaacttacttacctaaagaaaaccccgtcacttttatgtttatgaaaagggcg aaattgcaatacttcaggcggggtcctcagcacaacgacattttcctaaacgcacatata gaaccaaaggatgtagctaggtatccgcttggggaacttttcgacccccacagaacccca aagatccaaacaagcactgccttcatgggagatgcactccactacatggagcctgaggta atcccaaaactgttcacaacatcagacacattgcagtctttgtatgccacactagtcttg cccccagaggcaatgcacaggatgcactccctacaccctagcatctacgagctcgaattc cacaaagagcacttcctgtacaagcctgggggaagttcgggagcagcctatgtgcatacg tacaaccaattagtgtggctcaagattggcagattcaaatggaaagatgatcaaggcaga agttgggtagtgaccgcacaagtccttgaaactaaaggggccaaccatttaatgctgttc caacgagggaatctcctgacaccagagctgagaagttttggggtggaaaccaaattcata acaatacccccaatattcctcccagagaagtacaatgcccgactacccataaaaaaaaac tgtgcgcagcagctgttcctgtacgttaagtctgtcaaaggagtgactgagcgagatatt tgggcaaagattaggcagctaatcaagacatcagagctgcaagactactctgcaaaagaa ctcacacttctggtaaactacttttacctaatctccagactgaagtcggagaactgcttt caggatgtgctgtccggaggaataatcaacaggttgtgcaaaccactgattgcgtggtac caggaactgaaaatgaaaatgctaggcaaggaggagtttgtgcaactgatggaagctcta gagtgggtagatgtcaatctgacctacgaagtgttcgactttgaatttggaagcacctac aaagacctttcaaacggcagaaactggctacacggagaagacttacccgaaaaggctgag gagccggaagatcaagagccatcagacccagattggtaccaaaaatacattcagctgtta gagaacaccaactcaagggtaggaggtcaagagcaggggagtcaaagtagccagagtggc gtgactgaagatgaggaggccaagcctggcaacgaaacccctggggaaactggcactgat agtctgggcgctccagaaaactcggaaagttcagggaagaaaaacaccacacttcaatgc ccatgcggacttgagctcccgatcgcagaagcaaacttccccgaaataccagtactagaa catccagaccgtctgaaaggaaggctcgcctattttttctccaaagacaataaaccatac tcctacacaggaggctcccacgcttcccgcggttggccaaattggcttgactcaatccta gctaccgtggggaagtcgatgatgctaccagagtttaaccagtgcttagtgcagaaatat gaaaggggagcgagcataccatttcatagggacaatgagccatgctacccaaagggccat caggtgctcaccataaacctcgagggtcaagcagaattttcggtgtcttgcaagtcgggg aacgcaaccacccgcatggaaaagggcacatatttcctctcacccccaggatttcaagag tcacaccagcatgcggtgaagagcttgagtgcgtcgagaatctcgctcacgttcagatgc actcaaattcagaatgtcttcggggaaggcttgtcttctgaggtgatagaccagcttcct tggaaagcttggttagaaaaaatcagacatttggggtttcaagggacgagcttgcaatac gactacaacggagctttgattagcccaatagagcgagtccaaagcttgcccaaagtcttc ccaaagggagctccaggggaccttttgagcaccttggacaagtggtcgagagcacccaca ccctattgtccaagcaagttaagggccaaagcttactcttctgatgtcaagaaccttaga gttggggccttgctaaggcaacaaggaaaagagtgggcaatgaggtttgactctttagtg gagtctggagagagagagctggccatatcagtaatccacggcgcgggaggttcagggaaa tccaaattgctccaatgctacatccaggacaacccagagacgaacattaccatcgtcctg ccgacgaacgagctcagaattgactggttaaagaagttgaaagaggtaagggagagcaag tttaagacttttgagaaagctcttcttagtccccctaccccggtagtgatcttcgatgat tatggtaaactcccggcaggatacattgaggcattctgcctatatttctccaccgttgag ctcatcattttgacaggagactcaaaacaaagcgtacatcatgagccgaacgagaatgcc atgaccagtcaactagaaccctttgtgtgggaagcggaaaagttttgcaggtactatata aatgccacacataggaacaaaagggacctggccaacagatttggagtgtactcggaggta actggggttacagaaataacacacggaagcacaccaataccggggcgacacatgctggta ccctccatatataagaaattggctttcacagaaatggggcataaggtgtcgacctacgcc ggctgtcaaggaattactgccccaagcgtgcaaatactgttgaccgaggagacggccctt tgctcgaaagaggtgatgtacacagccttgtccagggcggttcattcaattcacttcatc aacacctcccccaacaacaaagctttctggtccaaattggaatgcacgccttacctcaaa gctttcttgtccaccctcagggaggagaccgcagtggaagacaagcccaaaggcgctgag ccaacccctgtcgagcctccaaagacgcacatagccaaagattcggccatgcccatctat gagaacatcattgaggaaatgccggagaaacatgagcgagagattttctcaaactcacat ggccacagtaactgcgtacagacggaggacccgttcatccaaatgttctcccaccagcag gcgaaggacgagacgctgctttgggccaccattgaagctcggttgaagatttccaacccg aaagccaactggcaagagtacctagaaaagaagccagtgggagatgtactcttcgaatca taccgtcaggcgatgaaactgcccgaccagcccattcccttctcagaggagctgtgggag tcctgcatgcatgaagtccaagccacatacctgaaaaaacccgaggtcatgatcaagaat ggcatgggtaggcagtccccagattacgacccacacgtaatttcccttttcctcaaatct caatgggtgaagaaaatggaaaagctgggtgctgtgaaaataaagcctgggcagactatt gcatcatttcaccaggcaacagtgatgctcttcggaacaatggctaggtacatgaggaga atgcgggaggtcttccagccgagaaacataaagataaactgcgagacgacccccgaggag ttgacagaatggctggcaccagacagggggggttggacattcaaggggccctcactggcc aacgattacacagccttcgaccaatctcaggatggggccatgttgcaatttgaaatactc aaggccaagcaccactcaatcccagaggacgtactcaacgcctacttggatataaagctg aactcaaaaatcttcttaggggtgttgtcaattatgagactgacaggagagggccccaca ttcgacgccaacaccgagtgtaacatagccttcacccacaccaagttccaaattcctgag ggcactgcccaaatttatgcaggggatgattcggcaatagatgcagtgcccccgatccgg ccaagctttaaacttgtagagcaaaaactcacactcaggtccaaaccagtcgtggccatg caggaaaggggtgattgggctgagttctgcggctatcggataacaaaatttggtttcatc aaagatccgaagaaactgcatgcttctctcatgctggagattaagagaggaaatttgaaa aatgtgaaggactcttacgaaattgacctcggtctggcatactaccacaaagatcgtctc catgaaatcatgagcgaggaagagcttagatgccactacgagacggttagaactctagtt aggtcaggaggtgggaaatggttgaaaaccttcatttccaaagatgaatcactttattaa

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