Viruses: 29061065 Help Entry 29061065          CDS       T40000                                  Symbol BI088_gp1 Name (RefSeq) Ligustrum virus A; replicase   KO K26628   Betaflexiviridae RNA replication polyprotein Virus 1899566  Ligustrum virus A Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Vmethyltransf RdRP_2 Peptidase_C23 Viral_helicase1 AAA_14 2OG-FeII_Oxy_2 2OG-FeII_Oxy AAA_22 AAA_19 AAA_16 AAA_30 ATPase_2 DEAD YobI-ATPase KAP_NTPase Peptidase_C65 AFG1_ATPase Herpes_UL42 Motif Other DBs NCBI-GeneID:  29061065 NCBI-ProteinID:  YP_009288956 RS:  NC_031089 UniProt:  A0A1C9IAW9 LinkDB All DBs Position NC_031089:86..5992 Genome browser AA seq 1968 aa AA seqDB search MALTYRSPMEEIVTCYESSVQSSIASASANFYKEVEAGNFQLFNYHLSPEAKRKLSIAGI YLSPFSAMPHSHPACKTLENYILYKVLPSYLDNRFFFVGIKQFKLELLKKRDPNLDLITS INRYVTSADKSRYGSDFVRLSSPEVLGLKRHASCLADSTLRDLAPALAARKGKYVFLHDE IHYWTTRDLLTFLEVLAPEQVLATMVYPPELLVGATSSLHSWCYTFDVQGKTLYFYPDGV RSEGYEQPVQGGFLLRTKKLHLPDGTTYCVDLLHSKFAHHLVSITRGDSCTPKARSFGPF EATGCKSLSLLTTTPNCFIPVAFEVVSRLYRYLRSLKKPDQQSAMAKLSQLLPEPTGTEI KFTHDFAKLVMKTGEVESMLGTQHLKLWMGKWLSRLPNVLARQFTLAKEVALDSFISELA PFCFTIKLEDVNWTTQYLQELLEPVDYEEDVDLVQELDRLYDGGKSPEWDRQRTPYSLLL SLTNQRQSILALNAASFSKGLAQVYTKMCTSDCTRRISRFEVHSVLSNLILDGSHLLPKA ACLRELAKSEYFDAIVRKIVALVTQKVRLYFHEIGILWFRSNFRGFTNYIGMQGESGTTF KDLHKSYQSAVVDFFRFGVIPPLKKCRYVHDVSYNRVSPLTTEQREQVSEPIDVPVQEEQ PLIVRDIGSANCSCGIIFQIDSLVYQDHNFIATDNLRGRRAGWYTRDCNVDYKYNGGSHI SRGWPDWLRLWCEVNEVDLKYDSCLFQEYSFGASIGFHADDEPIFARGEEILTVNLCGTA DFCIRGDGCNGVIELQGPAKFTMPHNFQESHKHSVRNCSERRQSVTFRVLKKEAEIILKI QEDCEIEIEPRAGFERSFCEIDVKISELDTEMEYKEVNVPGDGNCFWHCMGHALCIDATV LKKRALNVELDTPELCARLKEQGGIDCFAEDEAIMACAIESRTAIFVHCPEQDICVRYCP KVQKSRVQLMLVKEHFTLLLPKNGCVVEAIANAIGRNPTEVLHVINEQCDESITKEIWAG DGVSKLDLECLFTLFGIEAQLFEGSNVKVLNQGGRNRACFELEKDHISYSPRRKAVAALV LRDAGFSSRISDTQFEFLSNAGTQLFYLASKSRAELLSQCLLDGSTGIISSSLFDGKKNL LRNSEERQTVPRDVVGIFGTFGSGKSTMLKKFFKANPRKMITYISPRKALAEEFKKMLSL NVRNQQTRKKLGQEHWTVSTFEKFLQNAELTKSGCVLIFDEIQLYPPGYLDLVSYLVPAD VRIVVAGDPCQSDYDSEKDRLFLGMIEADFKRLLTGASYNFVIQSKRFINPNFIDRLPCS FGNLGGTKDKEEYLMYDGVDGLAKIPEQFLEAILVSSFDEKKIVYSYIGQDSNVMTFGES TGLTFDYGTVIISSVSSMTSEQRWVTALSRFKKNICLVNLTNVLWSQLALDYRGKVLHKF LTGTASVTDLSAFLPGEPKFTHSYDLNVGKDEGVKEEKLAGDPWLKGMIFLGQAEDCEEI QEIATEVKEQWFKTHLPQADLEGVRATWVHKIMAKEMREVRLGYLVSDQFTDEHSKQLGK QLTNAAERFETIYPRHRANDTVTFIMAVKKRLRFSNPAKEMGKLGQAKLYGKFLLDEFLK KIPLKRQHDKVMMDAARQAFEDKKTSKSAATIENHSNRSCRDWLIDIGLIFSKSQLCTKF DNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEMKLHEVLPSNYYIHSGKGLEELNDWVLR GKFEGVCTESDYEAFDASQDQYIVAFEMAVMKYLGLPQSLINDYVFIKTHLGSKLGNFAI MRFSGEASTFLFNTMANMLFTFLRYEIKGNEFICFAGDDMCASRRLPIKKEHDGFLSKLK LKAKVAFTNKPTFCGWNLTPDGIYKKPQLVMERMCIAKETNNLANCIDNYAIEVSYAYRL GEKALNRMDEEEAAAMYNCVRIIIKNKHLLKSDVATLYTTKSGFSSLA NT seq 5907 nt NT seq  +upstreamnt  +downstreamnt atggcacttacttacagaagtcccatggaggaaattgtgacatgttatgaatcttccgtt caatcatctattgctagtgcttcggcgaacttctacaaggaggtagaagcggggaatttc caactgtttaattatcatctatcgcctgaagctaaacgcaagttgagtattgcaggcatt tatcttagcccattttccgctatgccacactcacatccagcatgtaagaccttagaaaat tatattttgtacaaagttttgccttcttatttagataatagatttttcttcgtaggtatc aagcaatttaagttggagctgttaaagaagagagatccaaatctagatcttattacaagc attaacagatacgtgactagcgcagataaatctagatatggatctgattttgtacgtttg agtagtcccgaggtcttaggcttaaaaaggcatgcttcctgtctcgctgattctaccctg agagatttagcccctgcacttgctgcgcgcaaggggaagtatgtctttctgcatgatgag atacattactggacaactcgggatctcttgacatttcttgaagtccttgctccagaacaa gtgctcgctacaatggtataccctcctgaattacttgttggcgccacgtcaagtttgcac agttggtgctacaccttcgatgtgcaagggaagacgctttacttttatccagatggcgtt agatctgagggttatgaacaaccagtgcaagggggtttcttactacgaacaaagaagttg cacttacctgatggtaccacttattgtgtagatctgttacacagtaaatttgcacatcat cttgtaagtattacgaggggggattcctgtactcctaaggccagatcatttgggccattt gaagccactgggtgcaaaagtttgagcctcttgacaaccactcctaattgcttcatacct gtggcatttgaggtcgtctctagattatatagatatcttagatctctcaaaaaaccagat caacagtctgctatggcaaaattgagtcaattgttgcctgaacccacgggaactgaaatt aagttcactcatgattttgcaaaattggtcatgaagactggtgaagtggaatctatgctg gggactcaacatttgaaattgtggatgggtaaatggcttagtaggttacccaatgtccta gctcggcagttcactctagcgaaagaagttgcactggactcttttattagcgagctagcc cctttctgttttactatcaaattggaggatgttaattggactacgcaatatttgcaagaa ttactggagcccgttgactatgaagaagatgttgatttggttcaagagttagatagacta tatgatgggggcaaaagtcctgaatgggatcggcaaaggacaccatattcccttttactg agtctgacgaatcaaaggcaatcaattttagcactcaatgctgcatctttcagtaaagga cttgcgcaggtgtatacaaaaatgtgcacctcagattgtactcgaaggattagccgcttt gaagttcattcagttctatctaacttgattttagatggatctcaccttctacctaaagct gcttgtttgagagaactcgcgaaaagtgagtactttgatgcaatcgtgaggaaaattgtt gcactggttacgcaaaaagtgcggctatattttcatgaaatcggaattctctggttccgt agtaacttccgcggttttaccaattacatcgggatgcaaggagagtcaggcaccacattc aaggatctgcacaagagttatcaatcagctgttgttgatttcttcagatttggcgttatt ccgccacttaagaaatgcagatatgtccatgatgtaagttacaatagggtgtcaccactc actacagaacaaagggaacaagtgagtgagccaattgatgttccagttcaagaggagcag cctttgattgtgcgggatattgggagcgcaaattgttcatgtggaattattttccaaatt gatagcttggtctatcaagatcataatttcatcgcaacagataacctcaggggtcgccgt gctgggtggtatactagagattgtaatgtagattacaagtacaatgggggctctcacatc agccggggttggcctgattggttaaggctttggtgtgaagttaacgaggttgatttgaag tatgattcttgcttgttccaagaatactcatttggagcttcaatagggtttcacgctgat gatgaaccaatatttgcccgtggagaagagattttgactgtgaatctttgcggcactgct gacttttgtattcgtggagatggatgcaatggagttattgagttgcagggtcctgctaaa tttacaatgccacacaacttccaggagtctcataagcactctgtccggaactgtagcgag cgaaggcagtccgtaactttccgcgtgctcaaaaaagaagcagaaatcatactcaagatt caagaggattgtgaaattgaaatagaaccgcgagctggctttgagaggagtttttgtgag attgatgttaaaatttcagagctcgacacagaaatggagtataaggaggtaaatgtgccc ggagatggcaattgtttctggcactgtatgggccatgctttgtgcattgatgcaactgtt ttgaagaaaagagctttaaatgttgagctagacacaccagaactttgtgccaggttgaaa gagcagggcggtattgattgcttcgctgaggatgaggctattatggcttgcgccattgag agccgcaccgcgatttttgttcattgtccggagcaggatatatgcgtgcgttattgccca aaggtacaaaaatcaagggtgcaattaatgcttgtcaaggaacatttcacacttttgctg cccaaaaatggttgtgttgtcgaagcaattgctaatgctattggacggaatcccacggag gtgctgcacgttataaatgagcaatgcgatgagtcgataactaaggagatctgggctggt gatggcgtgagtaaacttgatcttgaatgcctcttcacacttttcggcattgaggcccaa ctttttgagggttcaaatgtaaaggtgcttaatcaaggtggacgaaatcgtgcttgcttt gaacttgaaaaagatcatatttcatactcaccaagaaggaaagcagttgctgcacttgtg ctgagagacgctggttttagttcaagaattagcgatacgcagtttgaatttctctctaat gcaggcactcagttgttctatttagccagtaagagtcgagctgaacttttgagtcagtgt ttgctcgatggtagtactggaatcataagttcaagcctgtttgatggtaagaagaattta ctgcggaattctgaggagaggcaaactgtgccaagggatgtcgtgggtatatttgggact ttcggttcagggaaaagcacaatgcttaaaaagttttttaaggctaatccaaggaaaatg atcacttacatatcaccaagaaaagccttagctgaagagttcaagaaaatgttgagcctc aatgttcgaaatcagcagacgaggaaaaagttggggcaggagcattggacagtgagcact tttgagaaattcttgcaaaatgctgaattgactaaatcaggttgcgtactcatcttcgat gaaattcaattgtacccgcctggttatctggatctagtctcatacctcgtccctgcggat gttcgtattgttgttgcaggtgatccctgtcaaagtgattatgactctgaaaaagatcga ttattccttggtatgattgaagctgatttcaaaaggttgctgactggtgcaagttacaat tttgttattcaaagcaaacgattcatcaaccctaattttatcgatcgattgccatgcagt tttggtaatcttggtggaacgaaagacaaagaggagtacctgatgtacgacggtgttgat ggactcgcaaaaattccagagcaattcctcgaagcaatactagtgtcgtcgtttgacgaa aagaaaattgtgtactcctacattggccaggatagcaatgtgatgacgttcggtgagagt actggactcacatttgattatggtactgttatcataagcagtgttagttcaatgacatct gaacaaagatgggttactgctctctcaagatttaagaagaatatttgcttagttaacttg actaatgtgctttggagtcagcttgcattggattaccgtggtaaagtcctgcacaaattc ttaacaggaacagctagcgtaacagatctatcagctttcttgccgggagaacctaaattc acacattcatacgatttgaatgttggcaaagatgagggagtgaaagaagagaagcttgca ggggatccatggcttaaagggatgattttcttaggccaagcagaagattgtgaagaaatt caggagattgcaacagaggttaaagagcagtggtttaaaacacacttaccacaagcggat ctcgagggtgtgagggcgacgtgggtccacaaaatcatggctaaggaaatgagagaggtc agattggggtatttagtatctgatcaattcactgatgaacattcaaagcaacttggcaaa caactgacaaatgcagccgagagatttgagactatttacccaaggcaccgagctaatgat actgtcacattcattatggctgtaaaaaaaaggttgagattctcaaatcctgcaaaggaa atggggaaactaggccaagctaagctttatggaaaatttttacttgatgaattcttaaag aaaattccattgaagcggcaacatgataaggttatgatggatgcggctcggcaggcattt gaggataaaaagactagtaaaagtgctgcaactattgaaaatcattcgaaccgttcttgc cgggattggcttattgatatcggtctgatcttctccaaaagccagctttgtaccaaattt gataatcggtttcgcgttgccaaagcagcgcagagtatcgtttgctttcagcacgaggta ctttgtagatttgcgccctacatgagatacattgaaatgaagctgcatgaagtactaccc agtaattattacatccattcaggtaagggacttgaagagctgaacgattgggttcttaga gggaaatttgaaggtgtttgcacggagtcagattatgaagcctttgatgcctcgcaagat caatacatcgttgcatttgaaatggctgtaatgaagtacttgggactaccacaatcattg atcaatgactatgtgttcatcaagacccatttgggttctaagcttggtaattttgcaatt atgaggttttcaggtgaagcaagtacttttctcttcaatacaatggccaacatgctcttc acatttttgagatacgagattaagggcaatgaattcatatgttttgcaggggatgacatg tgtgcatcgaggcgcctgccaatcaagaaagagcacgacggatttctgagcaagctgaag ctgaaagcgaaagttgctttcacaaataagccaactttttgcgggtggaacttaacacca gatggtatctacaagaaaccgcagttggtgatggagagaatgtgcattgctaaggagacg aataatcttgcaaattgtatcgacaattatgccattgaggtctcttacgcatatcggttg ggtgaaaaagcattgaatcgaatggatgaagaggaagcagctgcaatgtacaattgtgtg aggataatcattaagaataagcacctgctcaagtccgatgttgctaccctgtatactaca aagtctggatttagttcgttagcttag

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