Viruses: 2943107
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Entry
2943107 CDS
T40000
Symbol
TRSVs1gp1
Name
(RefSeq) Tobacco ringspot virus; RNA1 polyprotein
Virus
12282
Tobacco ringspot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
DUF5957
Motif
Other DBs
NCBI-GeneID:
2943107
NCBI-ProteinID:
NP_919040
RS:
NC_005097
UniProt:
Q88893
LinkDB
All DBs
Position
NC_005097:101..7015
Genome browser
AA seq
2304 aa
AA seq
DB search
MGFTCPNSDCLYSRSEWSNRALREEGLSFSMRCPGACCGAMLVRKQQEPEAVDQRHSPER
VRIAPHQNVCAGLPGVGPSKCPKHSQVPLAPKSKSVPARATVSASPLKKQHCDVVVTVGP
PADLELVYPALVSKGSANPPKVGKKSFNEALLEKRAAYQVRTAVPPPGPIRVVKTAATPV
KVEKVRFPKGAVAFNGANFIDAKGYVVLSAGALKILRGVQKLRRQQARSARRMAACRRVR
LAVFAARLPSLLRKADEATSGGFKYVDLNAPRVVRKAEKRPKKKPAKKAVRPASPVEEEI
NWDDFIIPESERTASPMKEEKPKRSLVPNSLGFGWWRPASGNLWDVVSQCQRACEGTFLE
ASAEACLVRAGVDDVALSVWARISKSVVQLSAYYDVNTLLENYTALSECTMDELQSVAVQ
LDSEYQELGPPTHFTCGLSNWARGAGKILYNFVAPTVEGIAGAGCRIVERAYELSKTVID
EIFSKMKSLFYDCFGNLFGHLNVLLSTIDSFWARASTWIMNILEKTHDCLKVLRDSAVWS
LLLILVGGLILLSERFLQSIGIISKPGTILGIFLATFLGIFGYTFFRKDDTLVSDLLCAF
KIAITNLFRTKPGPPGSPIIVDGDVVIPESAVAMSTCSFMGGLDIAIAAIGNVGASILGF
KVGALQYAAKIATCLDQLRKGKDVLKEMTCWIIETLGALWNKMTGREATFFDEVSAIVAV
DIREWLEESQNLCLAAQTFSIGDKIVLEQCERLIADGHKLLRGMGDADRKLSSSFLSTVQ
RKVSDLEKIHTQSVRAGYFEGRRMEPFWVYIHGPSHCGKSLLMEPMSRELLRAGGFSESS
IYTKNSCDKYWSRYRRQACVQIDDLSAGKTDPSLESQLINLVASKEVPLDMAEVEDKGIL
FDSAILVTSSNTAHVPTNANVNHAEAYKNRMNVVIQCRRKPEYSPMGMELEGTFQPFDPR
NPQASIECMLQHRETHAPITGWISAGAAMAEAVNQFRLHREKEMILQSNHLSSFRPAHPI
YTECATFLSMYARDASFVPPVDLGCKWEIPSGYMTIAAVDGRVFGFSQLGVCTEISKQMK
FTEEMEQYTLDKFAPDITKTMASQSRFKLVGAFLKGMIREEDNVVSLTSLGPKSTATQRE
FFETLGLAERVYLRAVQKKVNKIRTDPAFDVEALHARLLSTIATSYEYVRTYGPKIFPIL
MGFVCVVFACYGFIMPLLSFASGGSAVGGMVAMEQIAAASVVSSGSSPVAHRNRAPPVQP
RYARHRLAGASAEDAYAYEEMMVVLYVDSTVAPVVNAVRGPGRQFFNSHQALMIPNNSTV
VAHFSTRDVVEIHWEHDVVRKGEKKDTEIIQYRCPSIPELPSRCKKYFEYDLERDFPGPF
TLDASCYRMQSPGKIDIELVSWTDHDRELRTRPLVIADPFGEDRYRREIPQYIQYGRPDQ
LHDCGAICVAKIGGQHRIVGLVISTDKHNTGVGLLPSALHMTTCSLSYVPEEWEEAPRGL
KKLGWNDRSELPHMPRKTQYVAVNEDLAIPFDNPKIPSVLVSDDPRTVGTPVEGKDPVLV
AMEKFYEPMTDFTEEEVRPGQTEVSLFEQVCDDIVQTWFDAGAEFEDVEDDVVINGDDDF
DKLIMDTSEGYPYVLERTHGEKGKTRYFEGGPGAYTLKPGTSVYNDYHKLQEEVQVEGGI
PEMVCIECPKDELLVERKVLQKLGTRNFEILELPKNMLFRKKFLHWALFLSDMRWCLPCQ
VGIVVQGREWGLLMDRLAAKNSVAYNCDYSKFDGLMSCQVLDAIGKMVNKCYSNANPNLK
KKGKGELPGSPPQLARYNLLMSIFGRKCLARSQVFEVRGGIRRGALTVLLNSVFNEILIR
YVYKTVIPSPEFNRFETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTLARKKITITDGS
DKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLRSADCDPIPLLHQN
VQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNP
AGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGV
QIKPVHAATQGAMPTAKFVESFRSIKKRPELELAISAYESGSNLYFKGCAPYNDIWACAI
SFCSAFGYAQKQVLLHMYDNCKRLGASSLRSYFNKSLVGDGCARRCEIHTTPAIAKQVER
LLPQVQCKHCEYDPEFASKPTTQLRKCTDPGVDGGKAMYIVRGLGRTAAKLVCSDICDGH
LMSCNTSFDKMVVNLFRRSCFKCL
NT seq
6915 nt
NT seq
+upstream
nt +downstream
nt
atgggctttacttgcccaaactctgattgtctctactcgcgtagcgagtggagcaatcgc
gccctccgcgaggagggtctttcttttagcatgcgttgtcctggcgcatgctgcggagca
atgttggtccgcaagcaacaggaacccgaagctgtggatcagcgccacagccccgaaaga
gtgcggatagcgccgcaccaaaatgtttgtgctggcttgccaggagtggggccttctaag
tgccccaaacattcccaggtgcctctggcaccaaaatccaaatctgtgcctgcaagggcc
acagtttctgcttctcctctcaagaagcagcactgtgacgttgtagtcactgttggccca
ccggccgacttggagctggtttatccagctcttgtttctaaggggtctgccaacccccct
aaggttggaaagaagagcttcaatgaagctcttcttgaaaagcgtgcagcctatcaggtt
cgcactgccgttccacctcctggtccaatccgggtggtgaagaccgctgccaccccggtc
aaggtggagaaggtgaggtttcctaagggagctgttgccttcaacggtgccaattttatt
gacgccaagggctacgtggtcctgagcgctggtgcgctcaaaattttgcgcggggttcaa
aaactccggcggcaacaggcgcgatctgcgcgtcgcatggctgcctgccgccgtgtgcgg
ctggcagtttttgctgctaggctgccttcgcttttgaggaaggcagatgaagccacatct
ggtggtttcaaatacgtagatctaaacgcaccgagggtggtgcggaaggccgaaaagcgg
ccgaagaagaaacccgccaagaaggcggtcaggcctgcctcccctgttgaggaggaaatt
aactgggatgattttatcattccagaatctgagaggactgcctccccgatgaaggaggaa
aaaccaaagcgctctttggtccccaattcattggggtttggctggtggcgcccagcctct
ggaaatctttgggatgttgtatcccaatgtcagcgtgcctgtgagggcacttttcttgaa
gcctctgctgaggcttgtctcgtgcgcgctggcgtagatgatgtggccctttctgtttgg
gcccgaatctcaaagagtgttgtgcaattatctgcatattatgatgtcaacacactgtta
gagaattatactgcactgtctgagtgcaccatggatgaattacaatctgtggcagtgcag
ttggattcagagtaccaggaacttggaccacccacacattttacctgtgggttatccaac
tgggctcgtggggcaggcaaaattctctataattttgtagcccctactgtggaagggata
gcaggcgcaggatgccgtattgttgagcgtgcctatgagttgtccaagaccgttattgat
gagattttcagcaaaatgaaatccctcttctacgactgttttggcaacttatttggccat
ttgaatgtgctgctatctacaattgatagtttttgggctcgcgcgtctacgtggataatg
aacattcttgaaaagacgcatgattgcttgaaagtgcttagggacagtgctgtctggtcc
ctattgttaattttagttggaggtttgatactcctttctgaaaggttcctacaatccatt
ggtataatttcaaagccaggaaccattttgggtatctttcttgcaacttttcttggcatc
tttgggtacactttctttcgtaaggacgatactttggtgtcagatcttttgtgtgccttc
aagatagccattacaaatcttttccggacaaagcctggtcctccagggtctcctatcatt
gtggacggtgatgtggtgataccggaaagtgctgttgcaatgtccacgtgcagttttatg
ggcggtcttgacattgcaattgctgctattggaaatgttggagcttccatccttggtttt
aaggttggagctcttcaatatgcagccaagatcgccacctgcttagaccagttgcgcaag
ggcaaggatgtgctcaaagagatgacctgttggatcattgaaacccttggcgccctatgg
aataaaatgactggtcgtgaagccactttctttgatgaagtctctgccattgtggcagtt
gacattagagagtggcttgaagagtctcaaaacctgtgcctcgcagcacaaactttctcc
atcggggataagattgttctcgaacagtgtgaacgtcttattgctgatggccataaactt
ttgcgaggcatgggtgatgctgatcggaagctttctagttcttttctttcaacggtgcaa
aggaaagtttctgatcttgagaaaatacatactcagtctgtccgtgctgggtattttgaa
ggaagaagaatggagcctttttgggtgtacattcacggaccctcccattgtggtaaatct
ctcttgatggaacctatgtctagggaattattaagagcgggaggcttttccgagtcgtct
atctacaccaagaattcttgtgataaatattggtctaggtatagaagacaggcttgtgtg
cagattgatgatttgtcagctggtaaaactgatccatctttagagagccagctcatcaat
ctcgttgcttcaaaagaggtgccattggatatggctgaggttgaggacaaaggtatactt
tttgactcagctattcttgtcacctcttccaacacagcccacgtgccaacaaatgcaaat
gtgaaccatgcggaagcttacaaaaaccgcatgaatgttgttatccaatgtaggaggaag
cctgagtactcccctatgggtatggaacttgaaggcacgttccaaccatttgatccacgg
aatccacaagcctcaatcgagtgcatgttgcagcatcgtgaaacgcatgcacctattact
ggttggatttctgctggagctgccatggctgaggcagttaaccaattccgcttgcacagg
gagaaagaaatgattttgcaaagtaatcatctttcttctttccgtcctgcgcatcccatt
tacactgagtgcgctactttcttgagcatgtacgcacgagacgcaagttttgtgccacca
gtggatcttggttgtaaatgggagattccaagtggatacatgaccatagctgctgtggat
ggtcgtgtttttggattttcacagcttggggtgtgtactgaaatctccaaacaaatgaaa
tttactgaggagatggaacagtacacccttgataaatttgccccagatattacgaagaca
atggcttcacaaagccgttttaaactcgttggggcttttttgaaaggaatgattagggag
gaagacaatgttgtttcgcttacctccctaggcccaaagagcactgcaactcaaagagaa
ttctttgaaactcttgggcttgctgagcgggtgtatctccgtgctgtacaaaagaaagtg
aataaaattcgcacggatcccgcatttgatgttgaggcgctgcatgctaggctactgagc
acaattgcaacttcctatgagtatgttaggacttatgggcctaaaattttccccatactc
atgggatttgtttgtgtagttttcgcatgctatggattcatcatgcccctgctttctttc
gcctcagggggttctgctgtaggtgggatggtcgcaatggaacagatagctgcggcttct
gtagtttcttctgggtcgagtccagttgcccaccgaaatcgtgcaccaccagtacaacca
aggtatgctaggcatcgtttagctggagcttcagccgaagatgcttatgcttatgaagaa
atgatggtggtgttgtacgttgattcaactgttgctccagttgtcaacgctgttagagga
cctggtcgtcaattttttaactcgcaccaggccctcatgattcccaacaatagcaccgtt
gtggctcatttttccacacgtgatgttgttgagattcattgggagcatgacgtcgtcagg
aaaggcgaaaagaaagacaccgaaattattcagtatcgctgtccttctattcctgaactc
ccctctcgctgtaagaaatattttgaatatgatttggagagggacttccctgggccattt
actttggatgccagctgttatagaatgcagagtccagggaagattgacatagagctggta
agttggactgaccatgatcgggaactccgcactcgccctttagttattgctgatccattt
ggcgaggatagatatagaagggagattccccagtacattcaatatggcagaccagatcaa
ctccatgattgtggtgctatctgtgtggccaaaattggaggtcaacatagaattgttggc
ttagtcatttccacagataaacacaatactggggttggattgttaccgtcggcgcttcat
atgacaacctgttccctttcctatgtgcctgaggaatgggaggaggcgccgcggggtttg
aagaaattgggttggaacgatcgttctgaacttccacatatgccgcggaaaacccaatat
gttgctgttaatgaggatcttgcgattccatttgataaccccaagataccaagtgtcttg
gtttcagatgatcctcgtactgtaggcacgcccgttgagggtaaagatcctgtcttggtt
gcaatggaaaaattttatgaaccaatgacagattttacagaagaggaagtccgcccaggt
caaactgaggttagtttatttgaacaagtttgtgatgacattgtgcaaacttggtttgat
gctggtgcggaatttgaggatgtggaggatgatgtcgtgatcaatggtgatgatgatttt
gataagctgatcatggacacatctgaaggttatccctatgtgcttgagagaacgcatggg
gaaaaaggaaaaacccgatattttgagggtggacctggggcttacactttaaagcctgga
acttctgtatacaacgattatcataaattacaggaagaagtccaggttgagggtggaatc
cctgaaatggtttgcatcgagtgccccaaagatgaattgcttgtggaacgtaaagttcta
caaaaattaggcactcgaaactttgaaatattggaattgcccaaaaacatgctttttaga
aagaaattcttacattgggctttgtttctctcagacatgcgatggtgcttgccgtgtcag
gtaggtattgtcgttcaggggcgtgaatgggggctcctgatggaccgtcttgctgcgaag
aattcggttgcatacaactgtgattattcaaagtttgatggcctcatgtcttgtcaggtg
ttggatgctataggaaaaatggtgaataaatgctattccaatgccaaccccaatttaaaa
aagaagggcaagggcgagctgcccggtagtcctccccaattagctaggtataatttgtta
atgtccatttttggtagaaagtgcctagctagatcccaagtttttgaagttcggggtggg
atccgtcggggtgcacttaccgttttattgaattctgtgtttaatgaaattctcatacgg
tatgtgtacaaaactgtaattccatcaccagagtttaaccgatttgaaacttttgtgact
ctggtggtttatggtgacgataacctcattgcagttgatccttcaatgcaaaagattttc
actggtgaggttattaagaaaacattggcaaggaagaagatcactattactgatggtagt
gataaattatcccctgtgcttgaggctaaaccccttgcgcagttggatttcttgaaacgt
tccttccttgtttctgattcagggcaggttatgccggcgctagatagaacttgtatatat
tcttctttgttgtatctgcgctcagctgattgcgacccaatacctctcttgcaccaaaac
gtgcaaaatgctctgcaagagttgtattaccgccaggatcgtgaagagtttgataatctt
cgaaccttttatctcgaaagattaccaatgtggcggaatggtcagcatcggttactggat
tggaaccaatgtgctgaacactggcgggctcgttatacaggatgtccttccgataatcct
gctggtgttttggatatgctggttgacccaaggtgtaaaagtttcatgctgccagctggt
cctgctaattggtctatgccgatagcagaccgcatttttgtctgtgggcccaagttttcc
gcaagtgggccctcatacaccttgtgtttcaatcgtcttgctgcaggtgagacaggcgta
caaataaagcctgttcacgctgcaactcaaggagctatgcctactgctaaatttgttgag
agtttccgctctataaagaagagacctgagcttgaattagccatctctgcttatgagagc
ggaagcaacctatattttaaaggttgtgctccttacaatgatatctgggcttgtgcgata
tctttttgttctgcttttggatatgcccagaaacaagtactcctccacatgtatgataat
tgtaagcgtttaggggctagttctttgaggagctacttcaataaaagcttggttggcgat
ggttgtgcacgtcgttgtgagattcacacgacgcctgctattgctaaacaagttgaacgc
cttcttccacaggttcaatgcaagcattgtgaatatgatcctgagtttgcatcaaaacct
actacccaattgcgtaaatgcacagatcctggtgtagatggaggcaaggcgatgtatata
gttcgtggcctaggtagaactgcagccaagctggtttgttcagatatatgtgatggacat
ttaatgtcttgtaacacttcatttgataaaatggttgtgaatctgtttaggcgatcttgt
tttaaatgcctttaa
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integrated database retrieval system
