Viruses: 2943113
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Entry
2943113 CDS
T40000
Symbol
RpRSVs1gp1
Name
(RefSeq) Raspberry ringspot virus; polyprotein 1
Virus
12809
Raspberry ringspot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
AAA
AAA_24
AAA_16
AAA_22
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
2943113
NCBI-ProteinID:
NP_944487
RS:
NC_005266
UniProt:
Q6W8W4
LinkDB
All DBs
Position
NC_005266:137..7240
Genome browser
AA seq
2367 aa
AA seq
DB search
MGWTCPVQGCMYSRSTWSNRGLKEDGLSSTMRCPGAMCGAMLVRSEPVQAPKATVVPQTP
VTAVRPKRTVVSATPLRKQDCVVVVEVGFPALLSLEYPALAGRARHTGEFDSALLARKPS
NGGTARAPTGWFKPRVVRTQPAKKALPSWVSEARRLIKGALEGSNAFGPRYCREKFPKAR
LVWVLGMLSKSSPPSVAIGRQLKKSFLALQARIARALAKKQSARAARRQEACRKIRLALQ
QARGIAALERQQARQLSGAGLYSVRLCTKRALSPIVEVPKRHKKKAISLPSPVSVQEFPE
GLVGPNFWETSGLLNCVASPQRREDLVFPVYGIDSCRTDPEYFVVGPKSPSKIMGDTKPR
LPTCPAEALNLLWASNLFEDWELDIIGQMVSDGLLTSQAFLDGCTLVSYYGQEQMVDSFH
CLLQDPVPAEVAEALAVDVQALDFDAVFGCGISDFLRGTRDAMKGWIMDPVIAKSTTWCN
TIIDKVRALFDQYFAPFHKIIDGMSYVNSLWAKCKEWAQSVLKNGSQLFSVMWETHCVSF
VIIITCACTLLVENVLKELRLISRVGTLTSCVISGALGILGCGYILAKCEDLAVVSASIR
AFLGVLLCPPTMEAVDLNQSLIPEEIQATSWTGVDRVLGALNAVGSGLTGFNTDTIIYWG
RFAQSFDGMRRGKDAVCALAACLFEKLGTVYNRVTGKEAAFFHELSSLVSIDVQGWLNSS
RRVMAESIAFAKSDAVAFATVERLINDGETIQLTAASAPKSHSMQFGQILAERLRELRTL
RNDMAHAGSFEGRRCVPFWLYIYGPPGVGKTTTMHEFSQALLTAFEFPSDSLTSKSATDK
YWSLYRRQALVQIDDLGAISESGMEQEMMNIVSSATYNPTMAVANEKTTLFDSKFIVSTS
NNYSAGTDAKIHDRKAFNRRRRVVIKTRGKAGVAFNPHDSTAAAEFCVVERDDRAETPIW
VQSGEAPDDKELYWMDFRTTVAYVIEQARIHHNAEDIEQAQYSMKHSRTRQLYQVCENYI
GEVKMSVANFVPGDMLGAWNLEPKGRFFYSCVDGRVYSYDPEQKAHDEGPVDKALDFEQI
CLEKLSYTLQADIQGGPKSATAGIFLRSMVSGECAVESVDKLNRSASREHLIFFKNLSLA
DRVYLRLVQKRILQLAMVGDPLGLRSYTVMMEGFQNSYNYVKENGGRLLLILCSCMLLGI
ACYTFFNALAILIGGTSVAAGAAAMVDIGACGSTSTYASEYGAKMGRRNMPHRSREIPAV
WSEETGHDEKWQLCGLLETCRSDMPAVHVNLVPGNKFAITKHQAQAIPDGSSVGLSVAGR
SFRTFQWRASALTEYAESEICTYFDSRIPSLGKQAMKMYSDSDLDALNVKYFSTRTLHFR
LVDDQVEKRHWDADACVISTPKTIVSTINGVIYRQEIPTAITYRRESVKHDCGALVFTEV
RGKPKAVGMLVGTLGGTTYVCKFPHIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRR
HQPHNSEKTEFVPIPEKYHMDDVPCKIPAVLSAKDPRLADIPQCMGYDPYKQGMEKFAHP
MQEIDEQLLATVCDEIAQEFHDVGVRGRMVSMDEAINGHHKYEIPSFYVEGASTRELNEL
RTSCSAEVWCCDPRSDIEFEYPRIIPGPVESKWKCESTCCGCTFKSGGTEAIISFVKARS
PCCEEIFFDGLDLTTSEGYPLFLDRPAGAKGKERFFEGSENQKFLIPDCPLDVQLKKGIE
ETHLGTPQLIIKESAKDELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQHFVYIAESVR
KRRRTLSSQVGIVVGSREWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITNIYER
MFSGNDGMSQFRQNLLMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAY
RSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMKEELGIKITDGADK
LSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYVRLQNYDWQAPLLQNV
QGSLYEASLHGPDMHARIYKHFATHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPASA
QMGHVFSQQTEIQELSQSQNPKRCFQLHPKIHICGPGHNEQDCFYVDVRVKGKITKGKGF
HHAPVFSAGSGQLGTVKWASSFRSSSACPMRDLAVDAFKRGECVYFRDNGELINAWLAAI
NFGMSINADGLDGLLQVYRNQGPTHLDDLSFYFEGGVVGVPAPAHLMVYGTDTSILNRLC
PKTVLESAPPPGRSSNVSERSQVQTFLHMSPKPCFITLKGSGKVCHGLRCNNSCRGHISC
TDVVRNSAANQRAAMLDVLRRGCYNIQ
NT seq
7104 nt
NT seq
+upstream
nt +downstream
nt
atggggtggacttgccctgttcaggggtgtatgtattcccgctccacttggagcaatcgt
ggcctcaaggaggatggtctatcctccaccatgcgttgtcctggtgccatgtgtggcgcc
atgctcgtcaggtcggagcccgttcaagctccaaaggctactgtggtgcctcaaaccccg
gttactgctgtccgccccaagaggacagtggttagtgcgacacccctgcgtaagcaggat
tgtgtcgtagtggtggaggtggggttcccagccctactctccctggaataccctgcactt
gcaggaagagctcgccacactggcgagtttgactccgcgctgctcgcgcgaaagccctcc
aatgggggcactgctagagcacctaccggttggtttaaaccgagggttgtgcgcacacaa
cctgccaagaaggcactcccttcttgggtttctgaggcccgccgcctaataaagggggcc
ttggaggggtcaaatgcgtttggcccacgctactgccgggagaaattcccgaaggcccgc
cttgtgtgggtactgggtatgctctcaaagagcagccctccttcagttgccattggaagg
caactgaagaagagtttcctggcactacaagctaggattgccagggcactggcaaagaaa
caaagtgcccgtgctgcacgcaggcaagaggcctgcaggaagatccgccttgctttacag
caggcgaggggtattgccgccctagaacggcaacaggcacgccagctctctggagctggt
ctgtattccgtgcgtttgtgcacgaagagggctttaagccctattgtggaagtgcccaag
aggcacaagaaaaaggcaatatctttgccttctcctgtttctgtacaggagtttcctgag
ggccttgttggtcctaatttttgggagacatctggtctcctaaactgcgtcgcctccccg
cagcgaagggaggatttggtctttcccgtttatgggattgacagctgccggacagatccg
gaatactttgtggtcgggcctaaaagcccttccaaaatcatgggggacactaaaccccgc
ctgcccacatgccctgcagaggcattgaatttattgtgggcttccaacctttttgaggac
tgggagctcgacattatcgggcagatggtctcggatggcttgttgacctcacaagccttc
cttgatggctgtaccctggtctcatattacggccaggaacagatggtggactctttccac
tgtcttttgcaggatcctgttcctgctgaggttgctgaggcgctagctgttgatgtgcag
gcgctggattttgatgctgtctttggttgtggcatttcagatttccttcggggaactcgt
gatgccatgaaaggatggatcatggatccagttattgccaagtcaacaacttggtgtaac
accatcattgataaggtgcgtgctttatttgatcaatatttcgcaccatttcataaaatc
attgatggtatgtcatacgtaaattcactgtgggccaaatgtaaagagtgggcccagtcc
gtgctgaagaatggttcacaactgttctctgtcatgtgggaaacacattgcgtgagtttt
gtcatcatcattacttgtgcgtgtaccctgctggtagaaaatgtgttgaaggaactccgg
ttgatatcacgtgttggtacccttaccagctgtgttatatccggtgctcttgggatacta
ggctgcggttatatccttgctaagtgtgaggatcttgctgtggtatctgctagtattcga
gcctttctcggcgtgttgctgtgtcctccaaccatggaggcagtggatctgaaccagtcc
ttgattcctgaggaaatccaagctacgagctggactggtgtcgacagagtgctgggggca
ctgaatgccgttggttccgggttgacaggattcaacacggataccataatatattggggc
agatttgcccaatcttttgacggcatgagacgggggaaggatgctgtgtgcgctctcgca
gcatgtctttttgaaaaactgggcacggtatataatcgtgtaacaggtaaggaagcagct
tttttccatgagctctcctcgcttgtttccattgatgtccagggatggttgaactcttca
cgcagagtgatggcagaatctatagcttttgctaaatctgacgctgtcgcttttgccact
gtggagagactgataaatgatggtgagaccatccaattgaccgctgcttctgctccaaag
tcccactctatgcagtttggtcagatacttgctgagcgcttgagggaactccgtactctg
cggaatgatatggcgcatgctggttcctttgaggggcgtaggtgtgtacctttctggttg
tacatctatggacctccgggggtgggtaaaaccactaccatgcatgagttttcacaggct
ttgttgacggccttcgagtttccctcagactccctaacatccaaaagtgccactgataag
tactggtcactctatcggcgccaagctttggtgcaaatagatgacctgggtgctatctct
gagagtggtatggaacaggaaatgatgaatatcgtttcctccgccacatacaatcctacc
atggcggttgctaatgaaaagacgacgcttttcgatagcaagttcattgtctcaacgtcg
aacaattactctgcaggcactgacgccaagatacacgaccggaaagcttttaaccggcgt
cgcagagtggttatcaaaacccgtgggaaggcgggagtggccttcaatccccatgatagc
actgcagcagcggagttctgtgtggtggagagggatgatcgggcagagacacctatatgg
gtgcaaagtggtgaggcccctgatgataaggaactatattggatggattttcgcacaact
gtggcttatgtcatagagcaagctagaatccatcacaatgcagaggacattgagcaagcc
caatattcaatgaaacacagccggacaagacaattgtaccaggtgtgcgagaattacatt
ggggaagtgaaaatgtccgtggcgaattttgtccctggggatatgttgggagcttggaat
ctggagcccaaaggcaggttcttttattcatgtgttgatggtcgggtttattcttatgat
cccgagcagaaagcccatgatgaaggaccggttgataaggctctagattttgagcagata
tgtttggaaaagctctcctacaccctgcaggctgatattcagggtgggccaaaatctgcg
actgctggtatttttttgcggtcaatggtttcaggagagtgtgctgtggaaagtgtggac
aagttaaataggagtgcatctcgtgagcaccttattttctttaaaaacttgtccctggct
gatagggtgtatctccgcctcgtacaaaagcgcattttacagcttgcgatggtaggagat
cccctgggattgagaagttacacagtaatgatggagggattccaaaattcttataactat
gttaaagagaatggagggagacttctgttgatattgtgtagctgcatgctgttgggtatt
gcctgctatacttttttcaatgcattggcaatactcattggtgggacttcagtggctgct
ggcgcagctgctatggttgacattggagcgtgtggtagtacttctacctatgcatcggaa
tacggcgccaagatgggccgtaggaatatgccacatcgttccagggagattcctgcagtc
tggtctgaagagactggacatgatgagaaatggcagctgtgtggtcttctggagacctgc
agaagtgacatgcccgcagtacatgtgaatcttgtaccgggtaataaatttgccataact
aaacaccaagcccaagccatcccagatggttcttctgtgggtctgagtgtggcaggaagg
agtttcaggacgttccagtggcgtgcttctgcacttacggagtatgctgagagcgagatc
tgtacgtactttgatagccgaattccctctttgggaaaacaggccatgaaaatgtactca
gattccgatcttgatgccttaaacgtcaagtacttttcgactcgtacactgcattttagg
ttggtggatgatcaagtcgaaaagcgccactgggacgcggatgcgtgtgttatatcaacc
ccaaaaaccattgtttctactatcaatggggtgatatatcggcaagaaatacccacagct
atcacgtatagacgtgagagtgtgaaacacgactgcggcgcgctcgtttttacggaagtg
cgtggcaaaccgaaagctgtgggtatgttggttggaactttagggggaacgacatatgtg
tgcaaatttcctcacattgaggttgatgcttttgcatgtgttcccgacatccgaggattc
aatcttgaagcaggagtttctactcttggctattctaaacttgggtggttggataggcgg
catcagccgcataacagtgagaagactgagttcgtgcccataccggagaaatatcacatg
gatgatgttccatgtaagataccggcagtgctcagtgctaaagacccacggttggcagac
ataccccaatgtatgggatacgatccctacaaacaaggtatggaaaagtttgctcatccc
atgcaagaaattgatgagcaactccttgccaccgtgtgtgatgaaatcgcccaagagttt
catgatgtgggcgtgcgagggaggatggtctccatggatgaggccatcaacggacatcat
aaatatgagatcccctcgttttatgttgaaggtgccagtaccagagagctcaatgagttg
cgtacttcttgctctgctgaagtctggtgctgtgatcccaggagtgatattgaatttgaa
tatcctcgcatcatccctggtcccgttgaatccaaatggaagtgtgagagtacatgttgt
ggttgtactttcaaaagtggtggtactgaggccatcataagttttgtcaaggcgcgatct
ccatgctgcgaagaaattttctttgacggccttgacttaaccacttcagagggctaccct
cttttcctggaccgcccagctggggcaaaaggaaaggaaagattttttgagggtagtgaa
aatcaaaagttcctcataccggattgtccgcttgatgtacagttgaagaaaggtattgag
gagactcatcttggcacgccacagctcattattaaagagagtgctaaggatgagttactg
aaagaagggaaggttttaccttccgaggggatgccgggaacacgattgttctccatttgt
cctgcatggtacaacatcgttgtgcgccaacactttgtatatattgctgaaagtgtgcgc
aaacgaagacgtactttgtctagtcaggtgggaattgttgtgggttctcgtgagtgggat
gatcttgcagctcgactcaggtcgaaaaaaaatgataagatgtactgctgcgattattcc
aagtttgatgggctgatgactccccagattgtccatgctatcacaaacatttatgagaga
atgtttagtggtaatgacgggatgagtcagttccggcagaacctgctgatgggtatctgt
aatcgtatctctatctgtggatcacaagtttatagggttgaagctggcatgccttctggg
tttgccttgactgttgacttcaactctatttttaatgagatactggtcaggtgtgcttat
cgctctcttgtacctgagattgagagaccttttttttccaataatgtggtcctgattgtg
tatggcgatgataatgttttgggtatccacccaaacattgagtctgcctttaatggcaat
gcaattaaggcctacatgaaggaggaattggggattaaaatcactgatggtgccgataag
ctcagccccgttatttgtgctcgtcctctcgagcagtgtgagtttttgaagcgtacctgg
aggaaagaccgacagtatggactataccgggctccacttgtggagactagtatatactca
tgcttacgttacgtacggcttcaaaactatgactggcaagctcccctcttgcagaatgta
caggggagcctttatgaggctagtctacatggtccagatatgcatgcgcgtatttataaa
cattttgcgacgcatttcccgaagtgggtggaagagcatgaattgtacacttatgaacag
tgtcgcacacgattcattgctgctaagaatggagattttaatttccatcctgcttcggca
caaatgggccatgttttctcccaacagactgagattcaggagttgtctcagtctcaaaat
ccaaaaagatgctttcaactccacccaaaaatccacatctgtggtcctggacataatgaa
caagactgtttttatgttgatgtccgggtgaaaggaaagattaccaagggtaagggcttc
catcatgcacctgttttttccgcaggttctggccaacttggtactgttaaatgggcatca
tcgttccgctcatcatcagcgtgtcccatgagggatttagctgtcgatgcttttaaacgg
ggcgaatgtgtttacttcagagacaatggtgagttaatcaatgcttggttagccgctatt
aactttgggatgtccattaatgccgatgggttggatggccttcttcaggtctatcgcaac
caggggccaacacacctcgatgatttaagtttctattttgaaggtggtgttgttggtgtt
ccagctcctgcacacttgatggtttatgggactgacacatcaattctcaatcgcttgtgt
cccaaaactgttttagaaagtgcccctcctccaggacgttcaagcaacgtgagtgagcgc
agccaggtgcaaacattcttgcatatgagtccaaaaccttgttttataacactcaagggc
tcaggtaaggtttgccacggtctgcgctgcaataactcatgtcgcggccacatttcttgt
actgatgtggttcgcaattctgcagccaatcaacgagctgcaatgctggatgttctgagg
agggggtgctacaatatccagtag
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integrated database retrieval system
