Viruses: 2943114
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Entry
2943114 CDS
T40000
Symbol
RpRSVs2gp1
Name
(RefSeq) Raspberry ringspot virus; polyprotein 2
Virus
12809
Raspberry ringspot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Nepo_coat
Nepo_coat_C
Nepo_coat_N
MP
Motif
Other DBs
NCBI-GeneID:
2943114
NCBI-ProteinID:
NP_944488
RS:
NC_005267
UniProt:
Q6W8W3
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Position
NC_005267:204..3524
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AA seq
1106 aa
AA seq
DB search
MSQFWGEFPEAVINTFQRLQIALIGDIKKCPLSSPLFPELSKLDAHSQHHLLASFELPRF
GGVTPGVMEQLHDAESELAEARARLLRERLHAVANKENIPYLGDCMYYDAPGINQEELLQ
AAFLEAPTPEWESGRIRPLWPKDDWFRDAKQGPYPEDYGDIPLGDFDNLYRAFDALVEEH
WMSVYSTTLNPFALLRCGSEFVEECVVSAGSLIPACMMTDHHLQPTGDRQADKEERQDYA
DSQDSIQSMGDFWKEFYSKDSGKKIPDSHKSRLANDPNKVGFTKSALFHKQPLAHSLAQT
WANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGPLYIEWINLPRMSENSARKLAE
AGWNNADICGVDLAVKSHIAVGTPVRVIISLVDGACSDMPTATMCAFEVNLAAQNNRSLN
LPLLSLPFSRLLADLHDFQHRVKIACQFRDPEGFNVGTPMLSFSSLEFSELKQTAFERNS
LLRDSWSEIEKRACHGGGRCVASQGIVQTWEKEVNPPLKEYAPLVLPPVPQPKRNFIDQQ
SGEVVRPLIQKSRSMRFKSPSDLWSRPSVDGGSTFTLSPSRGSLRCDNVPGCAYEVDPLH
LLYYELVNVPKDTLGGTLLTRIDVRAKAATFDSAVWRQWVRDGCLKPKIKMRITAATSCF
SGIVLGACLDAYRRIPATTKTDFTASLVTGLPNIVWATRDTSEIEWDIDLAAVCGHTFFA
LEDTFGYMDFLVYVLRGNEVTAVADWSIYVSFHVDWTQESMSATLIPTFVWPPEPADISY
FKEVWGPYHFTLDGTEAKESFSLMPGMAIPRGAQTVRTFPRVLAAHFRSWTGKVRMSIQE
VSSIFLTGTYMVGVSWNATADLTDITTRKHWIVKSGEVFELDLYCPYGENPTFTGLVNGI
PYIIVHRLGGIIGPKDSVGTFGFMIHLHGLTGVYKNPTLHSGDRSVGSAWFRVTNILDDN
LVFNIPGRIEDMVAVAGKYEVTNYANPTSMLFSVTGLHGGFIRLHITWCPNTSLGESKGT
LKYMQYLYHTTTENFFGDQATRGIIDQNGFTVDLACGDFFGATRVGLKGEVERLGIYSSN
AKSIAEIRVSFEILSMKFYGSTIRVK
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagttttggggagaattccccgaggctgttattaacacctttcagcgccttcaa
atagcgctgattggtgacataaagaaatgtcccctctcctcccctctcttccccgagctt
tctaagctcgatgctcactcccagcatcatttgctggcctccttcgaactccccaggttc
ggaggagttactcctggtgtcatggagcaactccatgatgcggagtctgaactggctgaa
gccagggctagactccttcgcgaacggctacacgcggtagccaataaggagaacatcccc
tatcttggggattgtatgtattatgatgcgcctggcatcaaccaagaggagctgcttcag
gcagcttttcttgaggctcccacacctgagtgggagagtggtcgtattaggcctctctgg
cctaaagatgattggtttagggacgccaagcaaggcccctacccagaggattatggcgat
attcctctgggtgatttcgataatctgtatcgcgcgttcgatgctcttgtggaggagcat
tggatgtctgtctactccaccacactcaatcctttcgctctactcagatgtggtagtgaa
tttgtggaggagtgcgttgtctctgcgggtagtctgattcccgcttgtatgatgactgac
catcaccttcagccaacgggtgataggcaagccgacaaggaagagcggcaggattatgcg
gacagtcaagactccattcagagtatgggtgatttctggaaagaattctattcgaaggat
tctggaaagaaaattcccgactctcacaagtcgagattggccaatgatcccaataaagtt
ggcttcacaaagagtgcgctgttccataaacagcccctggcgcattcactggcccaaacg
tgggcaaattttaggggcacacaagataaggcggacttggtcaaggtgaccatggacatg
aatattgagaaatatacagtccgccttcctgacgcagtgcgtacgacagcgggtccgtta
tatattgaatggatcaacttaccacgcatgtccgagaattccgcacgtaaactagctgag
gctgggtggaataatgcggatatttgtggcgtggatctcgctgtcaagtcacatatagct
gttggcacaccagtacgtgttatcatctctctcgtagatggtgcgtgttctgatatgccc
acggcaactatgtgtgcctttgaggtgaatttggcagcacagaacaatcgatcactgaat
cttccgctgctgagtttacctttttcgcggctgctagctgacttacatgatttccaacat
cgtgttaagattgcttgccagtttcgggaccctgagggctttaacgtgggaactcctatg
ttgagcttttcttcgcttgaattttctgagctgaagcagaccgcatttgagcggaattct
ttgctcagggattcttggtccgaaattgaaaagcgtgcttgtcacggtggtggccgttgt
gttgcgtcccagggtatcgtgcagacctgggagaaggaggttaatcctcccttgaaagaa
tatgcacccttggtcttgcctcctgttccccagcccaaaagaaattttatcgatcagcaa
tctggggaggttgtgcggccattgattcagaagtcccgctccatgcgatttaaatcgccg
tctgatttatggagtaggccctctgtggatgggggatcaacattcacactgtcgccgtca
agaggctctttacggtgcgataatgtgcctggttgtgcctatgaggtagatccattgcac
ttgttgtattatgaattggtcaatgtaccaaaagacactcttggcggcactttgctgact
cggatagatgtccgggctaaggctgcaacctttgatagtgctgtatggcgacaatgggtg
agagatggttgtctcaaacccaaaatcaaaatgcgcattaccgcagctacttcgtgtttc
tctggtattgtgttaggtgcgtgtcttgacgcatatcggagaattcctgcaaccacgaag
actgatttcactgcgtcccttgtgacgggcctacctaacattgtgtgggcgacacgcgat
acttcagagatagaatgggatatcgatcttgcggcagtgtgcggacatactttttttgca
ctggaagatacctttgggtatatggactttctagtttatgtgctcaggggtaatgaggtt
actgccgttgctgattggtcgatatatgtttccttccatgttgattggacacaggaaagt
atgtcggccacacttatcccaacctttgtatggcccccagaaccagctgatatttcttat
ttcaaagaagtatgggggccttaccatttcacacttgatggtaccgaggcaaaagaaagc
ttcagtttaatgcccggtatggccatcccccgcggtgcgcaaactgtgcgtaccttcccc
cgcgttttagctgcacatttccgatcgtggactgggaaagtcaggatgtctatccaggag
gtttcctccattttcctgaccggaacatacatggttggtgtgtcttggaacgccactgct
gatctcaccgacattactactcggaaacattggattgttaaatccggtgaggttttcgag
ttggatctttactgtccttatggtgagaatccaacttttacaggcctggttaatggaata
ccatatatcattgtacacaggcttggaggaatcattggtcccaaggattctgttggaacg
tttggttttatgatacacctacatggtttaactggtgtatataaaaatcctacgttgcac
agtggagaccgttctgtggggagtgcctggttccgtgttactaatatccttgatgataac
ttggtgtttaacataccgggtagaattgaagatatggttgcggttgctgggaaatatgaa
gtcacgaattatgctaatcctaccagtatgctcttttccgttactggtttgcatggtggc
ttcatacgtcttcatataacatggtgtccaaacacaagtctcggtgagtcaaagggtact
ctcaaatatatgcaatatttgtaccatacgaccactgagaatttctttggtgatcaagca
acccgtggcatcattgaccaaaatggtttcacggttgaccttgcctgtggcgatttcttt
ggtgccacgagagttggtctgaaaggggaagttgagagacttggcatatacagttcaaat
gccaagtctattgctgaaattcgtgtttcctttgagatactgtctatgaaattttatggc
agtaccatcagagtgaagtga
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