Viruses: 2943167
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Entry
2943167 CDS
T40000
Symbol
HoMVgp1
Name
(RefSeq) Hordeum mosaic virus; polyprotein
Virus
41764
Hordeum mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C6
Poty_coat
Poty_PP
RdRP_1
Potyvirid-P3
Peptidase_C4
Peptidase_S30
DEAD
Helicase_C
Flavi_DEAD
ResIII
Peptidase_S76
Motif
Other DBs
NCBI-GeneID:
2943167
NCBI-ProteinID:
YP_025107
RS:
NC_005904
UniProt:
Q6PY34
LinkDB
All DBs
Position
NC_005904:132..9284
Genome browser
AA seq
3050 aa
AA seq
DB search
MAQNTFLQFGSLNTGLVMTGNNWIVKPYDQETEKRAIAREWHAYYLNAGRELTTPTKAFE
AFDAKMREKESVELPVVQHDADETTPECTLTDDKGWFVQKVSRANKHKKPKHTGDASNLI
RAVLNVSKKTKIPIEIIGKRRTTLRFKNTHGKKLLHAVTQHEMKRIRRTDLQCDAFANAT
LNLVKQTNHVTPIASIREIKPGHSGAILKDAYNDIFIVRGISNNMLVDARTHVIGNLNAI
EHFSDDTREQASLSPHAPKFDLPEQEHMCSLQWDEQSVTQFQQMLSQAFMPQANFQCATC
AKTAALRTRKDMIEQARNSTFMKALDQERGNVRWNAIANNFDTLLGSTGTEVGIQTTQDI
AKICYGYNMEPYRNIMQITQVLTDPLLQDEDEIQGARQALLQLARFLKNRELSVMAKPAE
TFRNTYPPNPKVNYILARNNSAIVNIDWGTRSDTIRPFLCKHYFWSDTDKPDHFRERKHI
RGERLVAKPLLHIPKTLKDVREATIGKKVQTFAISDTCITKRHNQIIYTCSCVTHADGSP
HLTDVIYPTNNCFFIGFPDNVDLISNPFNNTDGKALCASAGYCYIHIFLAMYMHITDTNA
PRFVRLIENLVTTMGEWPTMQTVATACCMIGLYFPDTQCAALPPILVDHEHKTMHVVDAS
GSLSHGYHILKASTVKQLYPFMSEDTESEMKEYNVGGQFADVSSLMPVLVKATFNKAKFD
DLLEHNPFLILLAALSPSVIVQMSNSGCMKYALRRFVNSNQTLAQIVAALDSLTTKVSRL
ELINQQLECLYSSYPQLLEFMDQLYDSTPEEKLIKMFILAHVKNTMEMQRADIQLVHDGF
CTLNTEMRKKKEQYYRGVIDSYFSECPYRQQLWLRLRSLKPCSYIKGCFKSVKRNVSKET
CYTCISAPFGWSMTGLRASKNCVVGVSSKGMNLTTRLVRNLAIRSISLMTPELGKIIGAL
SAVSLLLAIANTIHRIISRKRMEVKKLVMEREDLLLDFISREMDAYCYRQDLLYLDDKHY
SHFVDYVRRINSAAGELAHNLFIREEVKHQAKDNNHIWTEKCIATFVLLMMMFDVEKSDK
LYSTLNKLKGIFSTIGQGSVYHQSLDDSLDVEELKKGTIDFVREEAMEPQGPVLSATFEQ
FWDTQLSQNRTIPHYRTVGQLIEMTRDTAIDIVNEISRAPVGTEFIVRGGVGTGKSTYLP
SLISSHGRILILEPTRPLTENVAEQLRGGPHFKSPTVMMRGLSVFGSSPITVMTSGFALH
FYANNRTLLREFAYIMIDECHVMDASAMAFYSLCKDVRVQAKILKVSATPPGRECDARPI
FPVTMTVCEQLTFDNFVSAQGTGSANDATKHGNDILVYVASYNEVDKLSSMLTNKGYSVT
KVDGRTMKLNTGPINMIGHSGKKHFIVATNIIENGVTLAADYLVDFGTKVVAELDVDGRR
IAYSKSPISFGERIQRVGRVGRIKPGGCLRIGETKRGIPEIPESVATLAAFSCFLYDLPV
MTGQVTLNILSKCTREQARAMAAFEISPFAMAPLVAYDGSMHPAIHSILKKYKLRDSEIA
LKRSSLPLRSSSNWFTVREYETFAGTILIDDKATRIPFLINDVPHKVFEQVWKAIQDYRA
DVTTIKLSAIESQKIAYTLQTDCTSIQRTISTIDMLIREEQKKKQMFAAYTSNSSGFLMT
SLSSIAHKLKSRWARDFCDQNLKTLIETRNQLCEFENISVEKYNEEFIRSYPSIALVEHQ
SKEAIAQKLQLKAKYDNRLVTTDILLALGTLAGGSVLLYKYSTSALDEQVSFEGDSKRAR
QKLQFKQGHNKKMYNEVFADDETIKENFGEAYTKKGRKGANFTKGAGTKNNVFTNFYGVD
PTQYEIVRYVDPLTGCTIDHDAKTPINARQLEQYFTDEREALHEESMLAPGASFVPNDIQ
AYFINTQTRRALRVDMEPHNPLRVGHRTNNIAGYPDREGEFRQAGTARPVNITQVPSRRE
SQVGHESKSHLAGVRDYSFVSKAICSLEYYYDNMVRCLYGLCYDNYIIANAHLIPKPNGW
LKIKTKRGVFTVNSMSKLRIKEIVGSDLIVITCPKDMPPAPSRLQFRNPRRGEKVVMVSV
TSSDASGNTMVSESSITSHKPNTNFWIHWISTKNGHCGLPIVSVEDQCILGLHSLGSVHV
KDNYYAAFGDDFGTENLSKTSTGDWASRWSYNPDNVNWGTMDLTRSKPTGSFKPTKEVSD
LETDVEHQHAQYTWLTKYIGNNLTAVAKCSGNLITKHVIKGRSPMFSLYLTVDDDAAQFF
QPLLSHYSPSKLNKEAFVKDLTKYDKLIKLGDVDPHHFEEATKSVLKLLKELGFGECAFI
TDQQQIFASMNMKAAAGALYGGKKQTYFEGWTDEEKNQILKESYERLYNGKLGVWNGSLK
AELRPNEKVEANKTRVFTAAPLDTLLAAKGCVDDFNNQFYDAHLKGPWTVGITKFKGRWN
DFLRLLPDGWVYCDADGSQFDSSLTPYLINAVLNLRLQFMEDWAIGKECLANLYTEIVYT
PIATPDGSVVKKYRGNNSGQPSTVVDNTLMVVLAMQYAISKYGLGLESTDTYIRYFANGD
DLLIAIHPDHEALLDTLKEHFGELGLNYDFTSRTRDRSELWFMSHQGKLIDDLYIPMLER
DRVVAILEWDRSHEPEFQMDAINAAIIEAWGDDELIHHIRKFYSWLLEQEPYKSLADCGR
APYLAETALRKLYTDQDAPQELLDLYANSMLELPTFDEPTLVFHEADDKTQPKANDQQNP
QTSDSGNKSGATDNNSGKDKSGDDKSKQLAKAQTGEKKRQENEKRVMQSGGDDADVSLKD
DNKTFEVPTVDVINKKLRMPKYKGKALVNTDHLMKYSPDQRDLSNKRATQRQLDNWVENI
VKDYNVDEGKIDIVLNGFMVWALDNGTSPNISGTWLMMDGEKQKEYPLEPIVKHAQPTLR
QIMMHFSDAATAYIVLRNTKGRYMPGYGLKRNLNDMNLAPYAFDFYEITSETPNRAREVH
MQMKAAAIRGKVNRTFGLDGTVASGSEDTERHTVDDVKHGTHSFYGAGMN
NT seq
9153 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaacaccttcctgcagtttggttccctcaacactggactagtgatgacaggt
aacaactggatcgtaaagccttacgatcaggaaactgaaaagcgtgctattgcacgtgaa
tggcatgcatattacctcaacgccggtcgtgagctcacgacaccgacgaaggcatttgaa
gctttcgatgccaagatgagagagaaagagtccgtagagctaccagtggtacaacacgat
gcagacgagacaacaccagaatgcacactcacggatgataaaggttggttcgtacagaag
gtttcacgcgccaacaaacataagaaaccgaagcacacaggtgacgccagcaatttaatc
cgagctgtgttaaatgtgtcgaagaagaccaagatacccattgaaatcattggtaagagg
cggacaacactccgctttaagaacacgcacggtaagaaattactacatgcagtgacgcaa
cacgagatgaagcgtattaggagaacagatcttcaatgcgatgcattcgctaatgcaacg
ttaaaccttgtaaagcagacgaatcatgtaacaccaattgcttcgattagagagatcaaa
ccaggacacagcggtgccatactgaaagacgcatacaatgacatcttcatagtgcgtggc
ataagcaacaacatgctagttgatgcaagaacgcacgtaattggtaatcttaatgcgatt
gaacacttctcagatgacacaagggagcaagcaagtctaagcccacatgcaccaaaattt
gacttacctgagcaagagcatatgtgcagcctacaatgggacgaacaatcagttactcaa
tttcaacaaatgctcagtcaagcattcatgccacaagcaaactttcaatgcgcaacgtgt
gcgaagacagcagcattgcgcacacggaaggatatgatcgaacaagcacgaaactcaaca
ttcatgaaggccctagaccaggaaaggggcaacgttagatggaacgcgattgcgaacaat
tttgatacactactagggtccacggggacggaagtgggtatacaaacaacgcaagacata
gcaaaaatctgttacggttacaacatggaaccatacaggaacataatgcaaatcacgcaa
gtactcacggacccactcctacaggacgaagatgagatacaaggtgcacggcaagccctc
ttacaattggcccggttcctgaaaaatcgcgaactgagtgtgatggcaaaaccagctgaa
acattcagaaacacataccctccaaacccaaaagtcaactacatcttagcccgaaataac
agcgccattgtgaatattgattggggaactcgtagtgacacaatacgcccatttctctgc
aagcactacttctggtctgacaccgacaaaccagatcattttagagagcgtaaacacatt
aggggcgagagactggtggcaaaaccactgttgcacatacccaaaacactcaaggatgtg
agagaggcaacaataggcaagaaggttcaaacattcgcaatatctgacacgtgcataaca
aagaggcataaccaaatcatctacacgtgcagctgtgtaacccacgctgatggaagcccg
cacttgactgatgttatctacccaacaaataattgcttcttcattggcttcccggacaat
gtggatcttatatcgaatcctttcaacaacacggatggaaaagctctatgtgcaagtgca
gggtactgttacattcatattttccttgcaatgtacatgcatataacggacactaacgca
ccccgattcgtaagacttatcgaaaaccttgtgacgacgatgggtgaatggccaacaatg
caaacagttgcaacagcttgctgcatgatcggactgtactttcccgacacgcaatgtgca
gcactgccaccgattttagtggaccacgaacataaaaccatgcatgtcgttgatgcgagc
ggctctttgtcgcatgggtatcacatcttgaaggctagcacagtgaaacaattgtatcct
ttcatgtcagaagacacggagagtgaaatgaaagagtacaacgttggtggacagttcgct
gacgtatcaagcctgatgccagttctagtcaaagctacgttcaacaaagcaaaattcgac
gacctcctcgaacacaatccttttctaatactccttgctgctttatctccatcagttata
gtgcaaatgagcaacagtggatgtatgaaatatgcgctcaggcggttcgttaactcaaat
cagacgttagcgcaaatagtggcagcattggattcgttgaccactaaagtttcacgctta
gagctcatcaatcaacaacttgaatgtttgtactcatcatacccccaactccttgaattc
atggatcagctatacgatagcacaccagaggaaaaactcatcaaaatgttcatattagct
cacgtgaagaacactatggagatgcagagagctgatatacagttagttcatgatggattc
tgcacattaaacacggaaatgcggaagaaaaaagaacagtattacagaggagtaatagac
tcttatttcagcgaatgtccatatcggcaacaattatggctaaggttgcgctcgttgaaa
ccgtgcagttatatcaaaggctgtttcaaaagcgtaaagcggaacgtttcgaaagaaacc
tgctatacgtgcatcagtgcgcctttcggatggagtatgacaggattaagagcaagcaaa
aattgcgtcgttggcgtttccagcaagggtatgaacttaacgacacgcttggtgcgcaat
ctagctatacgaagcatatccctcatgacacccgaacttgggaagatcattggagcactg
tcagcagttagcctcttactagccatcgcaaacacaatacataggataatatcacgcaaa
cgtatggaggtgaagaaattggttatggaacgtgaagatctacttctcgactttatatca
cgagaaatggatgcttactgctacaggcaagacttgctctacttggatgacaagcactat
tcgcacttcgtcgactacgttagacgcattaatagtgcagctggtgagttagctcacaac
ttgtttatacgggaggaggttaaacaccaagcaaaagacaacaatcacatctggacagaa
aaatgcattgcaacctttgtattattgatgatgatgtttgatgtggagaaaagcgacaag
ctctattcaactctcaacaaacttaaaggaattttctcaacaataggccaaggttcagtc
tatcatcaaagccttgatgacagcctggacgtggaggaactcaagaaagggactatagac
tttgtgagagaggaagcaatggagccccaaggacccgtattaagcgccacatttgaacag
ttctgggatacgcagcttagtcagaatcgtacaattccccattaccgaaccgttggacaa
ttaattgagatgacacgcgacactgccatcgatattgtcaacgaaatctcaagagcgcca
gttggaaccgaattcatagtccgaggcggcgttggaactggaaaatcaacatacttgcca
tcattgatatcatcacatggacgcattttaatcttggagccaacgcgacctttaacagag
aatgtggctgagcaacttagaggaggccctcattttaagagtccaacagttatgatgcga
gggttgagtgtgtttggatcaagccccatcacagttatgacaagcgggttcgcactgcac
ttttatgcaaacaacagaacactcctcagagaatttgcatatattatgattgatgaatgt
cacgtgatggatgcttcagcaatggcattttactctctatgcaaggacgtgcgcgtacaa
gctaaaattctgaaggtctccgcaacaccaccaggtagggagtgtgatgctcgtcctatt
tttccagtcactatgacagtgtgcgaacaactcacattcgacaacttcgttagcgcccag
ggcaccggatcagcaaacgacgcgacaaaacatggaaacgacatcttggtgtatgttgca
agctataatgaagtggacaagttatcatctatgctaacaaacaagggatactctgtcacg
aaagtggatgggcgcactatgaaattgaacactggtcctataaacatgatcggccactct
ggaaagaagcacttcatagttgccacaaacatcattgagaacggtgtcactctggcagct
gactacctggttgattttggaactaaggtagtagcagagcttgatgtggatggaagacga
attgcgtactcgaagagtccaatttcgtttggagaacgtatacagcgagttggaagggtt
ggaagaattaagccaggtggttgtttacgcattggcgaaaccaaacgaggaataccagaa
atacccgaatcggtggcaacccttgcagcattcagttgtttcttgtatgatcttccagtc
atgacaggccaagtgactctgaacatcttatcaaagtgcacacgcgaacaagcaagagcc
atggcagcttttgagatatcaccattcgcaatggcacctctggtagcttacgatggttca
atgcatcccgcaatccacagcattctcaagaagtacaagctcagggattcggagatagct
ttgaaacggtcttcactgcccttacgctcttctagcaactggttcacagtaagagaatac
gaaacattcgctggcaccattctgatagatgacaaggcaactcgcataccttttcttatc
aatgacgtgccgcacaaagtttttgagcaagtttggaaggctattcaggactatcgcgcg
gatgtcacaacaataaaactgtcagcaatcgagtctcagaagattgcatacacactccaa
acagattgtacatcaattcaaaggacaatctcaaccattgatatgttaattagagaggag
cagaaaaagaagcagatgttcgcagcatacacatcaaactcttctggtttccttatgaca
agtctaagttcaatagctcacaaactcaaatctcgctgggccagagatttttgtgaccaa
aaccttaaaacactaatcgaaacacgaaaccagctttgtgaatttgagaacatatcagtt
gagaaatacaacgaggagttcatccgtagctatcctagtatagctctggtcgaacatcaa
agcaaagaggccatcgcccaaaagttacagttgaaagcgaaatacgacaatcgtttggtg
acgacagacatacttctcgcacttggcacactcgctgggggtagcgtacttttgtacaag
tattccactagcgcattggacgaacaagtgagctttgaaggggatagcaagagagcacgc
caaaaattgcaattcaaacagggacataacaagaaaatgtacaatgaagtgtttgctgac
gatgaaaccattaaggaaaatttcggagaagcttacactaagaaaggtaggaaaggagca
aacttcactaaaggcgccggcacgaagaataacgtgtttacaaatttctacggtgttgat
ccaacgcaatatgaaattgtgaggtacgtggatcccttgacaggctgcacaattgatcac
gacgctaaaacgccaatcaatgcgcgccaattggagcaatatttcacagatgaaagagag
gcgttacatgaggagtcgatgttagcaccaggtgcttcattcgtgccaaatgacatacag
gcctatttcatcaacacgcaaacgaggagagctcttagggttgacatggagccacataac
ccgctacgtgttggccatcgcacgaacaacatagctgggtacccggacagagaaggagag
ttcaggcaagcgggaacggcgcgaccagtgaacatcactcaggttccatcaagacgtgag
agtcaagtaggccatgaaagcaaatcacacctagcaggcgttcgtgactattcatttgtt
tcaaaagctatctgtagtttggaatattactacgacaatatggtgcgctgtctgtatggt
ttatgttatgacaactacatcattgcaaatgcacacctaattccaaagccaaacggatgg
ctgaagattaaaaccaaacgaggggttttcacagtcaattcaatgagcaaattgcgaata
aaagaaattgtgggatcagatctgatagtaatcacttgcccaaaggacatgccacctgca
ccaagccgtctccaatttcgaaacccacgccggggagagaaggttgtcatggttagtgtt
acatcaagtgatgcatcaggtaacacgatggtttcagaatcgagcataacgagccataaa
ccaaacacgaatttctggatacattggatttccacaaagaatgggcattgtggcctacca
atagtctcagtggaggaccaatgcatattaggtttacatagtcttgggtctgtgcacgtt
aaggacaattactatgcagcatttggcgacgactttggcacagaaaacctgtcgaagacg
agcactggtgattgggcaagtcgttggtcgtacaacccagacaacgttaactggggcacc
atggatttaacacgcagcaagccgactggaagctttaaaccaactaaagaagttagcgac
ctggagacagatgtagaacatcaacatgcacagtacacatggttaactaagtacattggc
aacaacttgacagcagttgccaaatgttctggcaaccttataacaaagcatgtcattaaa
ggacgtagccccatgttttccctttacctcacggtcgatgatgacgcagcacagtttttc
caacctcttctatcacattacagtcccagtaaattgaataaggaagcatttgtgaaagat
ctcactaagtacgataaattaatcaaacttggggatgtggatccgcatcattttgaagag
gcaaccaagtcagtattgaaactgctcaaagaacttggatttggggagtgtgctttcata
actgatcaacagcaaatctttgcatccatgaacatgaaggcagctgctggtgcattatac
ggaggaaagaagcaaacatactttgaaggatggactgatgaggagaagaatcaaattctt
aaagaaagctacgaacgtttgtacaatggcaagctaggagtttggaacggatcgctcaaa
gcagagttgaggcccaacgaaaaggtggaagcgaataaaacaagagtatttacagctgct
ccacttgatacgctactagcagctaaagggtgcgtggacgatttcaataaccaattttat
gacgcacatcttaagggcccatggactgttggtataaccaaatttaaaggcaggtggaac
gactttctacgattactgccagatggatgggtgtattgcgatgctgacggttcacaattc
gatagttcactcacgccttatctgataaacgcagtgttaaatttgcgattacaattcatg
gaggattgggccattgggaaggagtgtctcgctaacttgtacactgaaattgtatacact
cctatagcaacacctgatggatcagtggttaagaagtaccggggaaacaacagcggtcaa
ccgtcaacagtggttgacaacacattaatggtggtgttggcgatgcagtatgcaattagc
aaatacggccttggtttagagtcaacggatacgtacatccggtactttgccaacggcgat
gatcttctaatagccatacaccctgatcatgaagcactcttggacacacttaaagagcac
tttggtgaacttggcttgaattacgacttcacctcgcgcacaagagaccgtagtgaattg
tggttcatgtcccaccaaggaaaattaattgatgatttgtacataccaatgctggaaagg
gatagagtcgtagcaattctcgaatgggatcgcagtcatgaaccagagttccagatggat
gcgataaatgcagcaattattgaagcatggggagatgatgaactaattcaccacatcagg
aagttttactcatggttactagagcaagaaccatacaaatcacttgctgattgtggccga
gctccatacctggctgagacagcgctacggaaattgtacacggaccaagatgcgccgcaa
gaattgcttgatttgtacgccaatagcatgttggaattaccaacatttgatgaaccaact
cttgtttttcacgaagcagatgataaaacacagccaaaagcaaacgaccagcaaaaccca
caaacaagcgatagtggcaataaaagtggggcaacagacaacaatagtgggaaagacaag
agtggcgatgataagtcaaagcagctagcgaaagctcaaactggagagaagaagaggcaa
gagaacgagaaaagagttatgcaaagcggtggtgacgacgctgatgtgagcctcaaggac
gataacaagacattcgaagttccaactgtcgacgttataaataagaaacttcgaatgcca
aagtacaaaggcaaagcgcttgtgaacactgatcatttgatgaaatattcaccagatcag
cgggatttgtcgaacaagcgcgcgacacaacgccaactggataattgggttgagaatata
gtcaaggactataatgtggatgaaggaaagatagacatcgtgctaaacggttttatggtt
tgggcattggataatggaacttcaccaaatatttcaggaacttggttgatgatggatgga
gagaaacaaaaagagtatccactcgagccgattgtcaaacatgcacaaccaacattgcgg
caaatcatgatgcattttagcgatgccgcaacagcgtacattgtgttacgcaacacgaaa
ggaagatatatgcctgggtatggtctgaaaagaaatttaaatgacatgaacctagcgcca
tacgcatttgacttctacgaaataacatcagagacgcctaacagagcacgtgaagtgcat
atgcagatgaaagctgcagcaataagaggcaaggtgaataggacctttggtctggatgga
acagtagctagtggaagtgaagacactgaacgtcacacggttgatgacgtgaagcatggc
acacactcgttctatggagcgggtatgaactaa
DBGET
integrated database retrieval system