KEGG   Viruses: 32014179
Entry
32014179          CDS       T40000                                 
Symbol
B7477_gp031
Name
(RefSeq) Columbid alphaherpesvirus 1; major capsid protein
  KO
K26014  Herpesviridae major capsid protein
Virus
93386  Columbid alphaherpesvirus 1
SSDB
Motif
Pfam: Herpes_MCP
Other DBs
NCBI-GeneID: 32014179
NCBI-ProteinID: YP_009352925
RS: NC_034266
LinkDB
Position
NC_034266:complement(46457..50611)
AA seq 1384 aa
MANQTPQPLTPSLAPFSAAAAMAPHDRILTTIEMTSHRTMFDYFRQFSSDDNGRYAAQFD
MLLGTYCNTLSLVRFLETGLAVACVCTRAPDLAYMNEGTVQFEVQQPMIAREGPHPADQP
VHNYMVKRVSRRSLNAAFVVAAEALGLLSEVSLDGTAIASHLRMRAIQQLARNVKTVLDS
FERGSVDQMLRILIEKAPPGPLMIPLSRSIIEGRMAGRVARANLVSELKRRIVTDLFIMS
KRGVGRDGILNMLSSMINSTQQTLAVPRLTHTDSRGRMVDGVLVVTSTIRQRLLSGILEL
VDTEAVVPVTYGEMMITGTNLVTAVILGKAVRNMDDVARYILSLREEQAAERVDEVLQGL
DERPQTDRVKAELVTIGDKLIFLEALERRVYQATQVQYPLVGNVDLTFLLPLGFYQGRMD
RYARHSGDYAPEHGSVDARMFPPQRVHFYNKDGQLQELSLADSIGTLCHPSFLEVDPTLE
HLRASQRDLGSIFGAYVSTHPVVGLEDAVRNFYDRWWQMLPETPRWVLESNMTAAQFLST
GNANLGLELHPAFDFFVVPADVEIPGPQTPPQVMAGVAGTWRVCNGNIPLPLCSSDFRDA
RGAELASHRHRLSTATIEAVTATFTDTSYPAALYLVEALVHGSERMFGVLSRLIIQCIRS
YWDNSRRVAFVNSFPMVAYIETYLAGGELPEECTNIYKDLMRHTRALRALVTEFTCQGEA
FGEQGQEEINHMMTDRTLLPPLIWDCDALVYRAAAARDRTVSLSVGGAQNYSVRPWADLQ
EVDFRRTGNTLIHNRPVRNSAEHRQRITPHHDVEWTTLSKIYYFAVVPAFSRGNCCTMGV
RYDNVYATAQSVVVPEVAADEEPALGPEDPRHPLNGRNLVPNTFNVLFHNGRLSVDADAM
LTLQEVINNMAERTTGIMCGADPDVGASVASTRNLRTFDGTLHHGLLMMAYPHNDETILA
GTYFYPAPVNALFACHDHLASMPGLNENVRNSARDVPPVPTFLGANYYSSVRQPVAKYVR
ESRCDPNDLSYALMACYFKFGPVALTHQLRTGLHPGFALTVLRQDRFLTDSGLFAERASE
SYFLGQISVTRRPHAGGVQFSLTQPRANVDLGVGYTAVSTPLLLRTAVTDMGRSTQSLYL
TRGSAPMLDAAVDEYLRRTATQGQSLAPQRAVPFLGTLMPNRPAGLQHGQRSICEFIVTP
VSADLEYFRTSCNPRGRSAGTVYSGEEPSDAEEVMYDHSQGDPAYPFRATINPWASQRFS
YADRLYNGLYNLSGASPLFSPTYKFFTASEVISRTRCLSKLIVEAGAATVAFGSDGEVQF
RRPPGSTELTEDPCALFQEAFPLFCATDRALLRTHNSAEPANAETHMAQYLIRDTSPVAG
CLPA
NT seq 4155 nt   +upstreamnt  +downstreamnt
atggcgaaccaaactccgcagcccctgaccccctcgctggccccgttcagcgccgccgcg
gcgatggcgccccacgatcggatcctgaccaccatcgaaatgacgtcgcaccgaaccatg
ttcgactacttcagacagttcagctcggacgacaacggcaggtatgccgcccaattcgac
atgctgctcggaacctactgcaatacgctgtcgttggtccgctttctggagaccggcctg
gccgtggcgtgcgtttgcacccgagccccggacctggcctacatgaacgaagggaccgta
cagtttgaggtgcagcagcccatgatagcccgcgagggtcctcacccggccgaccagccg
gtccacaattacatggtcaagcgggtttcgcggaggtccttgaacgcggcctttgtcgtg
gccgccgaagcgctcggcctgctctcggaagtctcgctggatgggacggccatcgcctcg
cacctcagaatgagagccatccaacagctggctaggaacgtgaagacggtgctcgattcc
ttcgagcgcgggtcggtcgaccagatgctgcgcatcctgatcgaaaaggccccgcccgga
cccctgatgataccgctgtcgagaagcattatcgaaggccgaatggcgggccgcgtggcg
cgcgccaatctggtctccgagctgaaacggcggattgtcacggacctgttcataatgagc
aagcgcggggtcggccgcgatgggatcctaaacatgctatcctccatgatcaactccacg
caacaaacgctggccgtgcccaggctgacccacaccgactcgcgcggacgcatggtggac
ggcgtgctggtggtgaccagcaccatacgccagaggctgctctcgggcatcctggagctc
gtcgacaccgaagcggtcgtgccggtgacatacggcgaaatgatgatcaccgggaccaat
ctggtgacggccgtcatactcggcaaagccgtccggaacatggacgacgtggcgcgctac
attctcagcctgcgggaagaacaggcggcggaacgggtggacgaagttctccaggggctc
gacgagcgcccccagaccgatcgggtgaaagcggaactggtcacgatcggcgacaaactg
atattcctcgaagctctagagcgccgggtctaccaagccacgcaggtgcagtacccgctg
gtcgggaacgtcgacttgacgttcctcttaccgttgggcttctaccagggtcgcatggac
agatacgcgaggcattcgggggattacgcccccgaacacggatcggtggacgccagaatg
ttcccgccgcagcgcgtgcacttttacaacaaggacgggcagctccaggagctctcccta
gcggactccataggcacgctgtgccatccctcgttcctagaagtggaccccacgctcgaa
cacctccgcgcctcccagcgcgacctgggaagcattttcggggcgtacgtctccacgcac
cccgtcgtcggcctcgaagacgccgtcaggaacttttacgaccgctggtggcaaatgttg
ccggaaaccccgcgatgggtgctggaatcgaacatgacagcggcgcagttcctctcgacg
ggcaacgccaatttggggttggaactgcatcccgccttcgactttttcgtggtgcccgcc
gacgtggagatccccggcccgcagaccccgccgcaagtgatggccggcgtggcgggcacg
tggcgcgtgtgcaacggtaatatccccctgccgctgtgctcgagcgactttagggacgcg
cggggcgcagagctggccagccaccgccaccgcctgtcgaccgcgaccatcgaagcggtc
accgcgacgtttacggacaccagctacccggcggcgctctacctcgtcgaggcgctggtg
cacggcagcgagcgcatgttcggggtcctgtctcgcctcatcatccagtgcataaggagc
tactgggacaactctcgccgggtggccttcgtcaacagcttccccatggtggcgtacatc
gaaacgtacctggccggcggggagctgccggaagaatgtacgaacatctacaaagacctc
atgcgccacactcgcgcgttgcgggccctggtcacggaattcacgtgccaaggcgaagcg
tttggcgaacagggccaggaagaaatcaaccacatgatgacggacaggactctattgcct
cccctgatctgggactgcgacgcgctcgtgtacagggccgcggccgcgagagacaggacc
gtctccctgagcgtcggcggggcgcagaactactcggttcggccgtgggcggatctgcag
gaagtcgacttccgacgcaccggcaacacgctcatccacaaccgacccgtgcggaacagc
gccgagcaccgccagaggatcacgccgcaccacgacgtggaatggaccacgttgagcaaa
atctactatttcgccgtcgtgccggccttctcccgcgggaactgctgcaccatgggcgtg
cgctacgacaacgtctacgccaccgcccagtccgtggtcgtccccgaggtggcggcggac
gaagaacccgccctgggccccgaagacccccgccaccctctcaacggacgaaacttggtc
cccaatacgtttaacgtcctgttccacaacggcaggctctcggtggacgccgacgccatg
ctgaccctgcaggaggtcatcaacaatatggccgaacggaccacgggcatcatgtgcggc
gcggatcccgacgtcggcgcctcggtggcctccacacggaacctgcgcacgttcgacggg
acgctgcaccacgggctgctcatgatggcctacccgcacaacgacgaaaccattttggcg
ggcacgtacttttacccggcccccgtcaacgctctgttcgcgtgccacgaccacctggcg
tccatgcccgggctgaacgaaaacgtgcgcaattcggcgcgggacgtcccgcccgtgccc
acgttcctgggagccaactactattcgtcggtccgccaacccgtggccaagtacgtgcgc
gaaagccgctgcgaccccaacgacctgtcgtacgcgctcatggcctgctacttcaaattc
gggcccgtcgccctgacccaccagctgaggacgggactgcaccccgggttcgcgctgacg
gtgctgcggcaggacaggtttttgaccgactcggggctctttgccgaaagagcgtccgaa
tcgtactttctgggccagatttcggtgacgcgtcgcccccacgccggcggagtgcagttc
tcgctgacgcagccccgggcgaacgtggacctcggggtcgggtacacggccgtcagcacg
cccttgctgctgcgcacggccgtcaccgacatgggcagatccacgcagagcctctacctg
acgcgcggctcggcgcccatgctggacgcggcggtcgacgagtacctacgccgtacggcc
actcaaggccagagcctggcgccgcagcgggccgtgccgttcctgggcacgctaatgccc
aaccgccccgccgggctgcagcacggccagaggtccatttgcgagtttatcgtcaccccg
gtctcggcggacctggagtacttcagaacatcgtgcaacccgcgcggcaggtcggcgggc
acggtctactccggcgaagaaccctcggacgccgaagaagtgatgtacgaccacagccag
ggggaccccgcctaccccttcagagccaccatcaacccgtgggcgtctcagcgattctcg
tacgcagatagactgtacaacgggctgtacaacctcagcggggcctcgcccctctttagc
cccacgtacaaattctttacggcctcggaagtgatctcgcggacgagatgtctttccaaa
ctgatcgtcgaagccggagcggcgacggtggcctttggcagcgacggggaagtgcagttt
agacgcccgccgggatccacggaactaacggaagacccctgcgctcttttccaggaagcg
tttcccctcttctgcgccaccgacagggctctactgcgcacccacaatagcgccgagccc
gccaacgcggaaacgcatatggcccaatacctaattcgcgacacgtcccccgtggcggga
tgtttgcccgcgtaa

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