KEGG   Viruses: 32708034
Entry
32708034          CDS       T40000                                 
Symbol
CAU80_sLgp1
Name
(RefSeq) Madrid virus; RNA-dependent RNA polymerase
  KO
K25345  Peribunyaviridae RNA-directed RNA polymerase L [EC:2.7.7.48 3.1.-.-]
Virus
348013  Madrid virus
SSDB
Motif
Pfam: Bunya_RdRp L_thumb_ring_vir L_protein_N NPHP3_N
Other DBs
NCBI-GeneID: 32708034
NCBI-ProteinID: YP_009362071
RS: NC_034497
UniProt: W8CZH5
LinkDB
Position
NC_034497:55..6801
AA seq 2248 aa
MAILLEDVIRQYSARIRNCNNPEIGRDILAEITMTRHNYFAQRFCEAIGIEYRNDVPAAD
IVLEMMPGLDLTRIRIPNITPDNYYRDGTKIYIIDFKVSVSDESAQHTYKKYDSLFGDVF
NQLNIEYEVVIIRMNPSDMHLHISSDNFSALFPNITLNVTFDWYFRLRDDLFQQFRDNEE
FMELIAHGEFTPTIPWVNETTPELFDHEVFHDFIASMPLENREDFYYALNHNAFQSDKWN
DLLHVIMRKYGDKYRDFIKANARRIFLTDSNYNRPTTEAILQGWSEMIERVHDQREVIDD
LSKQKPSIHFIWGPNSRNESNENNTKIIRLSKKLQQIKEKDSFSLAFKNIGLLMDFSEDI
DKYEAFCAKLKSDARSSLKPKSKKIDPIKIGNSTILWEQQFKMDTDTIPKEIRLKFLKEF
CGIGNHKQFKDRMMEDLDLGKPKILNFENQDIKNQAYAMMQNTAYFMSKDSGLAKVGNIL
EEFKDKIINANEDTWNLISEIAKTRYWQSINDFSILIKNILAVSQYNKHNTFRIVCTANN
NFFGIVYPSTSIQSKRSTIVFSTIVLHESENEILKCGALYKTYRMKNGFLSISKAIRLDK
ERCQRLVISPGLFMLTALLFKGECEVNLTDVMNFAFFTSLSITKSMLSLTEPSRYMIMNS
LALSSHVREYIAEKFSPYTKTLFSVYMTDLIKRGCMSANDQRQQISIKDVFLNEFEITQK
GVTNDRNLQSIWFPGKVNLKEYINQIYMPFYFNAKGLHNKHHVMIDLAKTVLEIELDQRV
NLPTPWGTNLMKQSVNLDVLVFSIAKMLNLDTSRHNHLRSRVENRNNFKRSLASISTFTS
SKSCIKVGDFKEHKERNALHMKKLQGKEAKKTRIANTEFVSDNDRDLEIVHSTYLDLRKS
VPNYTDYMSTKVFDRLYERFKNHDFEDKPAIEVIMDVMRNHKDFKFCFFNKGQKTAKDRE
IFVGELEAKLCLYGVERIAKERCKLNPDEMISEPGDGKLKKLEINGESEIRYLIDATKNL
SREQSQIDELLDTPKGIKLEINADMSKWSAQDVFYKYFWLIALDPILYPFEKQRIIYFFC
NYMNKELILPDEMMCSLLDQKAQRDNDLIRQMTNGFTTNTVNIRRNWLQGNLNYTSSYIH
SCSMMVFKDILKEVSALLEGRCNVNSMVHSDDNQTSVIMVQDKLNNDIITKFVCDTFERC
CLSFGNQANMKKTYITNHIKEFVSLFNIYGEPYSVYGRFLLPAVGDCAYIGPYEDMASRL
SATQTAIKHGCPPSLAWVSIALNHWITFNTYNMLPGQINDPTKIFHFERKELPIELCGLL
QADLSTIALVGLESGNISFLTSLLKKMSPPQLVKESVQAQCQNIDQWDLENLSESEMMRL
KILRYVVLDSEVREDSTMGETSDMRSRSLITPRKFTTPASLERLVSYKDFQEILADPLRT
EDLLDTMINNPELLVTKGENSEEFMTTILYRYNSKKFKESLSIQSPTQLFIEQILFANKP
VIDYTGIQDRYLSILDVPKIQENEGIIGRKTIPETFVAIKRDLSLMTIDNKDIKLVYSFC
ILNDPLNTTACNAMLLSQVQSLMDRTSLSAVTMPEFRNMKLIRYSPALVLRSYIHNNLTI
GGANENAMKRDLFHLQEFINQTKIRERLERRIADNEEIKGERDRMFEIKEITKFYQACYD
YIKSTEHRVKVFILPMKTYTAFDFCATIHGNLMKDKGWFAVHYLKQIISGTAKASVSQAP
ASEMIVVGECFRLIAHFCDTFIDVGSRLQFLYNIIDNFSYKNIPVKALLDTMMRTNKRQH
FLPILHWLNELTQHDIDKYDAYKANERVIWNDWQVNRDMNTGNIDLTIKGYQRTIRIIGE
DDFLRIGELEVLKDDTTPIETHGRKLLNARHGLKFEKMQRYKVIEPNTYYICWQNRTRFS
YTYQLLLSNIIEARNAQTVSVTGGKFNELVPVCPVIISKVDSDEKMNLRQIKFLNMDCSL
TRLQLNQNEFAIVKRCHFSKMVFFNGPEMIVGNMNITNLIQTPSLLTTNYISLSQMPMMT
LTRIFNCNGEDSEVDEFEFLSDEILEETETATINAQPMFNIQYETKSKKGFTYKKALQEA
LSRGIQEIEENFDFCKDGFYSPKNIAIIALLVNVIDRLHTNEWSTIIRKSFHMCFFNNGK
DRLFHMMNIPKTFIKNPIGEIPNWEKIRTFIVQLETAFPGNNWHQMFEHFKEKCILLIDR
EIKMEGMSWGEMLDELDDYKDTEMFHFS
NT seq 6747 nt   +upstreamnt  +downstreamnt
atggctattttgcttgaagatgtcatcagacaatattctgctaggatcaggaattgtaat
aatcctgagattggtcgtgatatcctagcagagataactatgactagacacaactatttt
gctcaacgtttttgtgaggctataggaatagaataccggaatgatgtgccagctgctgat
attgtcttagagatgatgccaggtttagatttaacccgtatcaggattccaaatataact
cctgataattattatcgtgacggaaccaaaatttacattatagattttaaggtatcggta
agtgatgaatcagctcaacatacatacaaaaagtacgattccctctttggagacgttttt
aaccaactgaatatagaatatgaagttgtcataattcgaatgaacccaagcgacatgcat
ctacacatctctagtgataacttttcagctttgttcccaaatatcactcttaatgtaact
tttgattggtactttagacttagagatgatctattccaacaatttagagacaacgaagaa
tttatggaattaatagctcatggagagtttactcctacaataccttgggttaatgagaca
accccagaattatttgaccatgaagttttccatgattttattgcatccatgcctctagaa
aatagagaggatttctattatgctttaaatcataatgcattccaatcagataaatggaat
gatttactgcatgtgataatgcggaaatatggtgacaaatatagagactttattaaggca
aatgctagacgcatatttttaaccgacagtaattataatagacctacgacagaagcaatt
ctacaaggctggtctgaaatgatagagcgtgttcacgatcaaagagaagtgatagatgat
ttatcgaaacaaaaaccaagcatacacttcatatggggtcctaattcaaggaatgaatcc
aatgagaataatactaagataataaggttatcaaaaaaattacagcaaatcaaagagaag
gatagttttagtttggcttttaaaaacatagggttgttaatggactttagtgaagacata
gacaaatatgaagcattttgtgctaaattgaagtcagatgctagatctagtttaaaacct
aaaagtaagaaaattgacccaattaagataggaaactcaactatattatgggaacaacag
tttaagatggatacagatacaatacctaaagagataagattgaaattcttgaaagaattt
tgcggtattggaaaccataaacagtttaaagatagaatgatggaggatctagatttagga
aaaccaaaaattcttaattttgaaaatcaagatataaaaaatcaagcctatgccatgatg
cagaatacggcatactttatgtctaaagatagtggattagcgaaggtcggaaatattctg
gaagaatttaaagataaaattataaatgctaatgaggatacatggaaccttataagcgaa
attgcaaaaacacggtactggcaaagcattaatgatttctctatattaatcaagaatata
ctagctgtttctcaatacaacaagcacaatacatttagaattgtatgtactgcaaataac
aacttcttcggaatagtttacccatccaccagtatacagtctaaaagatctactatagta
ttctcaacaatagtactacatgaatcggagaatgaaattttaaaatgtggtgcattgtac
aaaacatataggatgaagaatgggtttctatctatatcaaaagctataaggttagataaa
gaaagatgtcagcgtctagtgatatcaccgggattattcatgttaacagcattgcttttc
aaaggtgaatgtgaggtgaatttaacagatgttatgaattttgctttcttcacatctctg
tctataactaaaagtatgctgtcactgacagaaccttcaagatatatgataatgaattca
ttggctttgtcaagccatgtgcgagaatatatagctgaaaaattctcaccatataccaag
acattattttcagtatatatgactgacctaattaaaagaggttgcatgtctgctaatgat
cagaggcagcagatatcaatcaaagatgtgttcttaaatgaatttgagataacacaaaaa
ggtgtaacaaatgatagaaatctgcaatcaatctggtttcctggtaaggtgaaccttaag
gaatacataaatcaaatatatatgccattttatttcaatgcaaaagggttgcataataaa
catcatgttatgattgatctagcaaaaacagtacttgaaatagagctagatcaacgggtt
aatcttcctacaccatgggggacgaatctaatgaagcaatctgtcaatttggatgtttta
gtattttctattgcgaaaatgttaaatctggacacatctagacataaccatttacgcagc
agagttgaaaacagaaataatttcaagaggtcactagcaagtatctctacattcacaagt
tctaaatcttgcattaaagtaggagatttcaaggagcataaagaaaggaatgcccttcat
atgaaaaaattacaagggaaagaagctaaaaagactagaatagcaaatactgaattcgtg
tctgacaacgatcgggacttagagattgttcatagcacttatctagatctaagaaaatca
gtacctaattacacagattatatgtcaacaaaagtgttcgacagattatatgaaaggttc
aagaatcatgattttgaagataagcctgcaattgaagtaattatggacgtcatgaggaac
cataaagattttaaattttgcttttttaataaagggcaaaagacagccaaagatagggaa
atatttgttggtgaactagaagcaaagctatgcttatatggagtagaaaggattgcaaaa
gaaagatgcaaattgaaccctgatgaaatgatatctgaaccaggggatgggaaactaaag
aaattagaaataaatggagaatcagaaatacgatacttaattgatgctacaaaaaactta
tctagagagcaatcccagattgacgaattgttagacactcctaaaggtataaaattagag
ataaatgctgacatgtcaaaatggagtgcccaggatgttttttataaatatttctggtta
attgcattagatcctatactatacccatttgaaaaacaaaggattatatatttcttttgt
aattatatgaataaagaattaattctccctgatgagatgatgtgctcgttgttagatcaa
aaagcacaaagagataatgatttgatccgccaaatgactaatggtttcactacaaatact
gtcaatataagaagaaattggctccagggaaacttaaattatacatctagctacattcat
agttgttccatgatggtatttaaagacatactaaaagaggtttctgctctattggaaggc
aggtgcaacgtaaatagcatggtccattcagatgacaatcaaacatcagtcataatggtt
caagataaactgaataatgatattatcactaaatttgtatgtgatacttttgagagatgt
tgtctatcatttggcaatcaagcaaatatgaaaaaaacatatattactaaccatataaaa
gaatttgttagtttattcaatatatacggagaaccttactcagtatatggcagattctta
ctacctgcagtaggagattgtgcatatatagggccatatgaagatatggcaagcagactt
tcagcaacacaaacagctatcaaacatggttgccctccaagtttagcatgggtaagcata
gcgttaaaccattggataaccttcaatacgtataatatgttacctgggcagataaatgac
ccaacaaagatattccatttcgaaaggaaagagcttccaatagagctatgtgggctttta
caggctgatttgtcaaccatagcattagtagggctggaatcaggaaatatctcttttctg
acctccttattaaaaaagatgtctcctccacagttggtaaaagagtcagtacaagcacaa
tgccaaaatatagatcagtgggatttagaaaatttatctgaaagcgagatgatgagacta
aaaatattgcgatatgttgttttggattctgaagtgagagaagacagtactatgggggaa
acaagtgacatgcgcagtcgatcgctaattaccccaagaaagttcaccactcctgcatca
ttagaacgtctagtctcgtataaagacttccaagaaatattggcagatccattacgcaca
gaagatttactagacactatgataaacaatcccgaattactagtgactaagggtgaaaat
tcagaagaatttatgacaacaattctatatagatataactcaaagaaatttaaggaatct
ttgtctatacaaagcccaactcaactctttatagaacaaatattatttgccaataaaccg
gtcattgactatactggtattcaagatagatatttaagtatattagatgttcctaaaatc
caggaaaacgaggggattataggaaggaaaacaattccagaaacatttgtggctataaag
cgagatttatcattgatgactatagataataaagatataaaactagtctactcattttgc
atacttaatgatcctttaaatactacagcatgcaatgcaatgctattgtctcaagttcaa
tccttaatggatagaacaagcttgtctgctgtaactatgccagagtttagaaatatgaaa
ctaatcagatattccccagcattggtattaagatcatatatacataacaatctgactatc
ggcggagctaatgaaaacgcaatgaagagagacttattccatcttcaagaatttataaat
caaactaagataagggagagattagaacggcgtatagctgataatgaggaaattaaaggt
gaaagggatcgaatgtttgaaataaaagagataacaaagttttatcaagcatgttatgat
tacataaaatcaacagagcatcgtgtaaaggtgtttattctccctatgaaaacatacaca
gcatttgatttctgcgcaacaatacatggaaatcttatgaaagataaaggctggtttgct
gtccattacctgaagcaaattatatcagggactgcaaaagctagtgtaagccaggcacca
gctagtgagatgattgtagttggtgaatgctttcgtcttatagcacatttttgcgataca
tttattgatgtgggatcaagattgcaattcttatataacataattgacaatttctcttac
aagaatatccctgtaaaagccttacttgatacaatgatgaggacaaacaaaaggcaacat
ttcttacccatcttgcattggttaaatgaattgacacagcatgacatagataaatatgat
gcatataaggcaaatgaacgtgttatttggaatgattggcaagtgaatagagacatgaat
actggaaatatagatcttacgataaagggttatcagagaactattaggatcataggagaa
gatgattttctgagaataggtgaattagaagtcttgaaggatgatactactccgattgaa
acacatggtaggaagctcttaaatgcacgacatggattaaaatttgaaaaaatgcagcgg
tataaagttatcgaaccaaatacttactacatttgctggcagaataggacaaggttttca
tatacttatcaattactattatccaatatcatagaagcacgaaatgctcaaactgtatct
gtcactggtggaaaattcaacgagttagtcccggtatgcccagtaataataagcaaggtt
gactcagatgaaaaaatgaatttaaggcagatcaaattcttgaatatggattgctcatta
actcgattgcaattgaatcaaaatgaatttgcaattgtcaaaagatgccatttttccaaa
atggtattcttcaatgggcctgaaatgatagtaggaaatatgaacattacaaacttaatt
caaacccccagcttattaaccacaaattatatatcattgtctcaaatgcctatgatgact
ctaacaagaatatttaactgcaatggagaggatagtgaagttgatgaatttgaattccta
tctgatgaaatcttagaagagacagagacagctacaatcaatgcacaaccaatgtttaat
attcaatatgagacaaaatcaaaaaaaggttttacatacaaaaaagcactacaggaagca
ctatctagaggaattcaagagattgaagaaaattttgacttttgcaaggacggattttac
tctcctaaaaatattgcgataatcgcattattagttaatgttattgatcgtcttcataca
aatgaatggtctaccattattaggaagtcctttcatatgtgtttcttcaataatggaaaa
gatcggttgttccatatgatgaatatcccaaagacttttataaagaatccaattggagag
attccaaactgggaaaaaatcagaacatttatagttcaactagaaactgctttcccaggc
aataattggcatcaaatgtttgaacactttaaagaaaagtgcatcttattgattgatagg
gaaataaaaatggaagggatgagttggggagagatgcttgatgaattagatgattacaaa
gatacagaaatgttccattttagttaa

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