KEGG   Viruses: 3562573
Entry
3562573           CDS       T40000                                 
Symbol
RdRp, PVSp1
Name
(RefSeq) Potato virus S; RNA-directed RNA polymerase
  KO
K26628  Betaflexiviridae RNA replication polyprotein
Virus
12169  Potato virus S
SSDB
Motif
Pfam: Vmethyltransf RdRP_2 Peptidase_C23 Viral_helicase1 AAA_22 AAA_19 AAA_30 UvrD-helicase MBD
Other DBs
NCBI-GeneID: 3562573
NCBI-ProteinID: YP_277428
RS: NC_007289
UniProt: Q4A3R1
LinkDB
Position
NC_007289:62..5983
AA seq 1973 aa
MALTYRSPIEEVLTLLEPNAQSLISNVATSSFQESEKDNFAWFCYHVSASAKEHLSRAGI
YLSPYSGYPHSHPVCKTLENYLLYKVLPPLVNNTFYFVGIKEFKLNFLKKRIKQMSMIQA
INRYVSSADKLRYGNEFVIKFGAASPELKRHHGYSLDPALRDLLPNIKRDSNLFFHDEMH
YWEKNQLIHFLEQCRPNTCLCTIVYPTGIFVGARRSLNPWAYEFEIKRDKLLFYPDGVRS
EGYEQLVNCGYLLRTRKILLRDGTMYSVDLVCSKFAHHLIAITKGDLITPTYRSFGPFEA
IKSAGLQGISKGRPKFYPVPCHMISRLYRYLRSLKKPDKQSAMAKFSQMCPEPSGDMIRF
IEELSDLIINTGTLRVMIDAELCKNFFGNLGLALPATLASKIKSTRAVSLEAFIASLEPL
VVDCELQTISWAVPLAQLLFSESPDDPPEDMIEAMDRRWVSSSTMLCDRVPAPYRGNMWS
ETSRAMSFWSIDFQRIKFLRGLMELYVDSMCTEGLATSVTFESYVAQIASSCSLLGLALI
KCLTAAEYAEVARIVSNTRLIDVLFTAEDLRWFHATRHSRHNVKFLDETADWARYKSEFE
CATYAKPKGTGHVGYLQNTVYSFHGVGARWSFDPSYSCESDSEATHSDYSVVEYPKAAPI
HSERTFPRGRDVEGVGCACGLQSATRVLEFPTEHGFNLEKGVPGKRAAWYCRGQIDYISG
AIRLENLGWPRWLSQWMELHEIDETYYNSMLAQEFPAGGTLECEVGDGGQFIPGSNVAIA
EVGGQSQVSIGCMAGTGQLLLELGDFIEVPGPCWSKHHLHMCCSEVRGVTFIFRRIKVPD
PVVNAPAVQIAAPATTPGAGSSKPNENDAHHTREGVAVHASGKCPAAKKFHRVPNAGGGD
CFWLAISHFTGVSVQDMKQGLQQLDWESDAFSAELALQLKPQAWAEEEAIIATSKQYRYR
IVVLSADKEQTVIYSPKCEAVQSMVLYHAGAHFEAALPRNDCVLVAVASVLRRRVEEVLS
ILGAQLGNEFLQDVLKGEGIDRDKLAVVFKLFDICAHIHAEGEVFVINSEGRLPGTFNLS
KDHIEHCKSKPMGITKFTSVHDASCEIKQETLSMLKAMCTLLPYNPCELRAKVLADSLNA
GSTGVLCDELFNKVGNLLEANEGRLRESVREVGCLLGTFGAGKSMVFRKVLSSNLGKSII
YVSPRKHLADSFNELVKSIKQQEGQRVCKVSHFHVRESTTEVRAIRPDATIIIDEIQLFP
PGYLDLFSMLAPAGVHMFLVGDPCQSDYDSEKDRSLFQAMKSDINLLLDDADYDFNCRSR
RFKDKLFDGRLPCSMGPMEGESSKFTIIEGIENCKAIHSQAEVCLVSLFDEKKIVQTYFP
SSCHCFTFGESTGMTYKSGVILITDTSQYTSERRWLTALSRFSHSIAFVNATGGNIQLVT
RLYQNRVLGRFLLKTAKIDDLKMLLPGRPRFKEGFGGERIGADEGKREFKLEGDPWLKTM
LDLLQKEDQEEVEEAVVELGEEWFRTHLPQCELEGVRARWVEKILAKEVREKRMGLLVSE
QFTDEHSKQLGKQITNAAERFETIYPRHRAADTVTFIMAVRKRLRFSDPIRDAAKLRAAE
MYGPFLLKEFLKHVPLKPMHDTRMMAEAKFDFEEKKTQKSAATIENHRNRSCRDWLADMG
MVFSKSQLCTKFDNRFRDAKAAQTIVCFQHSVLCRFAPYMRYIEKKLNEVLPARFYIHSG
KGLEELNKWVIESKFDGLCTESDYEAFDASQDQYIVAFELALMKYLGLPNDLIEDYKYIK
THLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYKLKGDERICFAGDDMCANRALFI
KDTHEGFLKKLKLKAKVDRTNRPSFCGWSLCSDGIYKKPQLVFERLCIAKETANLANCID
NYAIEVSYAYKLGERIKERMSEEELDAFYNCVRVIIKHKHLLKSEIRCVYEDV
NT seq 5922 nt   +upstreamnt  +downstreamnt
atggcacttacttacagaagtccaatcgaggaagtgttaacactactagagcctaatgct
caatccctaatttccaacgtcgccaccagcagctttcaagagagtgagaaggataacttc
gcctggttttgctaccatgtgtcggctagcgccaaggaacaccttagtagagcaggaatt
tacctaagcccctactcggggtatcctcactctcacccggtgtgcaagacattggaaaac
tacctactgtacaaagttctaccaccacttgtaaataacaccttttattttgtaggaata
aaagaattcaagctcaattttcttaagaagagaatcaaacagatgagcatgattcaagcc
ataaataggtatgtgagcagtgccgataagttgcgatatggtaatgagttcgtgatcaaa
ttcggcgcggcttcgcccgaactcaagcggcaccatggctattcactggatccagccttg
cgtgatcttttaccgaacataaagagggattctaatctcttcttccacgatgagatgcat
tattgggaaaagaaccagttgatccacttcttggagcaatgcagacccaacacatgcttg
tgcaccattgtgtacccaacggggatattcgttggggcccgacgttctttgaatccgtgg
gcatatgagtttgagatcaagagagacaagctgctcttttacccagatggggtgcgtagt
gaaggctatgagcagctagtcaactgtggttatctcctccgcactagaaagatattgcta
agggatggcactatgtacagcgttgatctagtgtgcagcaaattcgcccatcatctaata
gcgatcaccaagggcgatttgatcacaccgacttaccgtagcttcggcccttttgaggca
atcaaaagtgcgggcttgcaggggataagtaaaggtaggccgaaattctatccggtgccg
tgccacatgatctctcgtttatacaggtacttacggtctttgaagaagcccgacaagcag
tctgcaatggcaaaattctcgcagatgtgcccagagccaagtggtgacatgataaggttt
attgaggaactgagcgatctaattatcaacactggcactttgagagtcatgatcgatgcg
gaattatgcaaaaatttttttggtaatctgggtctggccctaccggctactctcgcatca
aagattaagagtacccgtgcagtaagcttagaagccttcatagcctcgcttgagccgctt
gttgttgattgtgaactgcagaccatctcatgggctgtgccactggcacagctgttgttc
agtgaatcgcctgatgatccccctgaggacatgattgaagctatggataggaggtgggtg
agtagtagtacgatgttgtgcgacagggtcccggcgccttaccgtgggaacatgtggagc
gaaacatcccgcgcaatgagcttttggagcatagattttcagcggatcaagtttctgaga
gggctgatggaattgtacgtggatagtatgtgcacagaaggtcttgcaacctccgtgact
tttgagtcctacgtggctcagatcgcgtcaagttgctcgcttctcgggctcgcattgatt
aagtgcttaactgccgctgagtatgccgaggtggcccgaatagtgagcaacacacgtttg
attgatgtgctcttcactgctgaggacctccgttggttccacgccacccgacattccagg
cataacgttaagttcttggacgaaacggccgattgggcaaggtacaaaagtgagttcgag
tgcgcaacatatgcaaagcccaaaggaacaggtcatgtgggttatctccaaaatactgtg
tacagctttcacggagtgggggcacgatggtcgtttgaccccagctacagttgcgaaagt
gattcagaggccacccactctgactacagcgtagttgaatatccaaaagcggcaccaata
cattctgaaagaactttcccaaggggcagggatgtggagggcgttggctgcgcatgtggg
ctgcaatctgcgacaagggtgttagagttccccacggaacatgggtttaatttggagaag
ggggttccaggcaagcgtgctgcatggtactgcagaggtcagatcgattacatatccgga
gccattcgccttgaaaacttgggctggccaagatggttgagccagtggatggaattgcat
gagatagatgagacgtactataatagcatgctggctcaagagtttcctgctggcggaact
ctagagtgtgaagtaggtgatggaggccagttcatcccgggctcaaatgtggcaatagct
gaggttggaggtcagtcccaggtttcgattggatgcatggcaggaaccgggcagttgttg
ctggaattgggggatttcattgaagtgcctggtccatgttggagcaagcaccatctccat
atgtgctgtagcgaagtgcgcggggtgacgttcatcttcaggcgaatcaaggtgccagac
ccagtagtgaatgctccagcggtgcaaatcgcagcgcctgccacaacgccaggtgcgggg
agttccaagcccaatgagaatgatgcccaccacacacgagagggggttgcagtgcatgcg
tccggcaagtgccctgcagcaaagaaatttcatagggtaccaaatgcaggtggtggcgat
tgtttttggctggccatctcgcacttcacaggggtgagcgtgcaagatatgaaacaggga
ttgcaacagctggattgggagagtgatgcattcagcgccgagttagccttgcaattgaaa
ccacaagcctgggctgaagaggaggccatcatcgcaacaagtaagcaataccggtacagg
atcgtggtgctgagtgccgataaagagcaaacagttatttatagcccgaagtgtgaggcg
gtgcagtccatggttctataccacgcaggggcccactttgaggcagctttgccccggaat
gactgcgtgcttgtggcggttgcgtctgtcctgcggagacgagttgaggaagtgctttct
attctaggcgcgcagttgggtaatgagttccttcaggatgtgctgaagggtgaaggaatt
gatcgggacaagctggccgtggtctttaaactctttgatatctgcgcacacatacacgcg
gagggtgaggttttcgtaataaactctgaaggtagactgcccggcacattcaatctaagc
aaggatcatattgagcattgtaagagtaaacccatgggaataaccaaatttacaagtgtg
catgatgctagctgtgagattaagcaggaaacactctccatgctaaaagccatgtgcacg
ttgctaccgtacaacccatgtgagcttagagcaaaggtgctcgccgatagtttgaatgca
ggcagtactggggtcctctgcgacgagttgttcaataaggtcgggaatttactcgaggca
aatgaggggcggttgcgggagagcgttagagaggtaggttgcttacttggaacttttgga
gctgggaagagcatggtctttaggaaagtactaagtagcaatcttgggaagagcatcatc
tacgtatccccaaggaagcatttagcagattctttcaatgagcttgtgaagtctatcaag
cagcaagaggggcagcgagtgtgcaaggtttcgcactttcacgttcgagagagcactact
gaagtgcgcgcaattaggccagatgcaacaatcatcattgatgaaatacagctgttccca
ccaggttatttggatctattctctatgttggcaccagcgggggtgcacatgttcttggtg
ggcgatccgtgccaaagcgattatgactcggaaaaagaccggagcctgtttcaagccatg
aaatccgacatcaatcttctgttggatgatgcggattatgattttaattgcaggagtcgt
aggttcaaggacaagctttttgatggtcgtttgccatgctcaatgggacccatggaaggg
gagtcatccaaattcacaatcattgagggcattgaaaattgtaaggccattcactcacag
gctgaagtttgtttagtatccttgtttgatgaaaagaagatagtgcagacttacttcccg
agctcttgccattgcttcacttttggagaatcaacaggaatgacatacaagtctggggtg
atactgatcacagacacctcgcaatacaccagtgaaaggaggtggttaactgccctgagt
cgcttctcacattcgatcgcctttgtgaatgcaaccggtggaaacatccagttggtgacc
aggttataccaaaatagggtcctaggtcgatttttgctcaaaacagcaaagattgatgac
ctcaagatgttgttgcctggtagaccacgctttaaagaaggattcgggggagaaaggatt
ggcgcagatgagggcaagagagagttcaagttggagggtgatccgtggttgaaaacaatg
ctagatctactacagaaagaggaccaggaggaggttgaggaagccgttgttgaacttggt
gaggaatggtttcgcacacatttgccgcaatgcgagcttgagggcgttagggcaaggtgg
gttgaaaagatattggcaaaagaagtccgcgagaaaaggatggggctattggtctctgag
caattcacagatgagcattcaaagcagttggggaagcaaatcacaaatgccgccgaaagg
tttgaaactatctacccgcggcacagagctgcagacacagtcactttcatcatggctgtg
aggaaaagattgaggttttcggacccgattagagatgctgcaaagctccgggctgcggag
atgtatgggcccttcctactgaaagaatttctcaagcatgtgccactgaaaccaatgcac
gacaccagaatgatggcagaggcaaagtttgattttgaagaaaagaaaacgcagaagagc
gcagccacaattgagaaccacaggaacagatcttgtagggactggctggctgacatgggc
atggtcttctcaaagtctcaactctgcacaaagttcgacaatcggttcagggatgcgaaa
gcagcgcaaaccattgtctgcttccaacatagcgtcctatgccgctttgctccgtacatg
aggtacattgaaaagaaactcaatgaagtattaccggcaaggttctacattcattcgggc
aaaggcttggaagagctgaataaatgggttatagagtccaaatttgacgggttgtgcaca
gagtcggactatgaagccttcgacgctagtcaagatcagtacatagtggcgtttgagcta
gcattgatgaagtacttgggcttgccaaatgatctcatagaggattacaagtacatcaaa
acgcatctgggctcaaagttagggaacttcgccataatgcgcttctccggtgaggctagc
accttcttgttcaacaccatggccaatatgcttttcacattcttgagatacaagctgaag
ggggatgagcggatatgcttcgctggtgatgacatgtgcgccaacagggctctattcatt
aaagatactcatgagggcttcctcaagaagcttaagctgaaagcgaaggttgataggaca
aaccgaccgagtttctgcgggtggagcttgtgctcagatgggatttacaaaaagccgcag
ctggtctttgagaggctttgtatcgctaaggaaacggccaatttggccaattgcattgac
aattatgcaattgaggtatcctatgcttacaagctcggggagaggattaaagagcgcatg
tcagaggaggaactggatgccttctacaattgtgtgagggtgattattaagcataagcat
ctgctgaagtccgagatccgctgtgtgtatgaggatgtttga

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