KEGG   Viruses: 35984104
Entry
35984104          CDS       T40000                                 
Symbol
POLY, BFX91_gp1
Name
(RefSeq) Hepatitis C virus genotype 7; polyprotein
  KO
K19358  Hepatitis C virus polyprotein
Virus
1544901  Hepatitis C virus genotype 7
SSDB
Motif
Pfam: HCV_NS1 RdRP_3 HCV_env HCV_NS5a_C NS3_helicase_C HCV_NS2 HCV_NS4b Peptidase_S29 HCV_capsid HCV_core HCV_NS5a_1b HCV_NS5a_1a HCV_NS4a HCV_NS5a Flavi_DEAD DEAD DUF2628 ResIII Helicase_C AAA_30
Other DBs
NCBI-GeneID: 35984104
NCBI-ProteinID: YP_009272536
RS: NC_030791
LinkDB
Position
NC_030791:340..9381
AA seq 3013 aa
MSTNPKPQRLTKRNTVRRPQNVKFPGGGQIVGGVYLLPRRGPRLGVRGTRKSSERSQPRG
RRQRIPKAASSQGKAWGKPGYPWPLYGNEGCGWAGWLLSPRGSRPTWGPTDPRHRSRNLG
KVIDTMTCGFADLMGYIPVLGAPLGGVARALAHGVRVLEDGVNYATGNLPGCSFSIFLLA
LLSCLTVPASAYEVRNSSGVYHLTNDCPNASIVYETDNAILHEPGCVPCVREGNTSRCWE
PVAPTLAVRYRGALTDDLRTHIDLVVASATLCSALYVGDICGAIFIASQAVLWKPGGGRI
VQDCNCSIYPGHVTGHRMAWDMMQNWAPALSMVAAYAVRVPGVIITTVAGGHWGVLFGLA
YFGMAGNWAKVILIMLLMSGVDAETMAVGARAAHTTGALVSLLNPGPSQRLQLINTNGSW
HINRTALNCNDSLQTGFIAALFYTHRFNSSGCPERMASCKPLSDFDQGWGPLWYNSTERP
SDQRPYCWHYAPSPCGIVPAKDVCGPVYCFTPSPVVVGTTDRRGVPTYTWGENESDVFLL
NSTRPPQGSWFGCSWMNTTGFTKTCGGPPCKIRPQGAQSNTSLTCPTDCFRKHPRATYSA
CGSGPWLTPRCMVHYPYRLWHYPCTVNFTIHKVRLYIGGVEHRLDAACNWTRGERCDLED
RDRVDMSPLLHSTTELAILPCSFVPLPALSTGLIHLHQNIVDAQYLYGLSPAIISWAIRW
EWVVLVFLLLADARICACLWMMMLMAQAEAALENLIHLNAASLAGTHGIWWLLLVFCASW
HLRGRVVPLVTYGICGMWPFFLMLLSLPPRAYALDREVSAALGTGMLAIILLVTLGPHYK
RLLALILWWVTYFLTRCEAALQTWVPPLNPRGGRDGFILCVLLCYPGLVFDITKWLLVMM
CPLYLLQLCLVRTPYFVRAQALIRVCSLFKTLAGGRYVQAALLTIGRWTGTYIYNHLAPL
ETWAAGGLRDLAVAVEPVIFSPMEKKIIVWGAETTACGDILCGLPVSARLGREVLLGPAD
DYRSMGWQLLAPISAYAQQTRGLISTLVVSLTGRDKNETAGEVQVLSTSTQTFLGTNVGG
VMWGPYHGAGTRTVAGRGGPVLQMYTSVSDDLVGWPAPPGSKSLEPCSCGSADLYLVTRN
ADVLPLRRKGDGTASLLSPRPVSSLKGSSGGPVLCPQSHCVGIFRAAVCTRGVAKAVQFV
PIEKMQVAQRSPSFSDNSTPPAVPSTYQVGYLHAPTGSGKSTKVPAAYASQGYKVLVLNP
SVAATLGFGAYMSKAYGIDPSVRTGARTVTTGAPITYSTYGKFLADGGCSGGAYDIIICD
ECHAIDATTVVGIGTVLDQAETSGVRLVVLATATPPGSVTVPHPNIEEVALGNDGEIPFY
GKAIPLQHIKGGRHLIFCHSKKKCDELAGKLTSLGLTAVAYYRGLDVSVIPTSGDVVVVA
TDALMTGFTGDFDSVIDCNVAVTQTVDFSLDPTFTIETTTVPQDSVSRSQRRGRTGRGRL
GIYRYVSSGERPSGMFDTSVLCECYDLGCSWYELTPSETTTRLRAYLNCPGLPVCQDHLE
FWEGVFTGLTHIDAHFLSQTKQEGQNYAYLTAYQATVCARAKAPPPSWDVQWKCLQRLKP
LLVGPTPLLYRLGSVTNEVTFTHPITKYIATCMAADLEVTTSTWVIVGGVLAAVAAYCMS
TGSVVVVGRVVLGSNVVTAPDREVLYQHFDEMEECSKAPELLKHAQTIGGMFKDKALAVL
DTLKPAAQAAVPIVETNFQKVEKLWNQHMWNFISGIQYLAGLSTLPGNPTVASLMAFTAS
VTSPLATSTTLLVNILGGWFASQLAPPSAATTFVVSGLAGAAVGSVGLGKVLVDVLAGYG
AGIAGALVAFKIMSGEVPSTEDLANLLPAILSPGALVVGVVCAAIIKRHTGTSEGVTQWM
NRLIAFASRGNHVSPTHYIQDDDASKRVMGILSSLTITSLIKRVLAWAQTDYSAPCAGSW
LREVWDWVCMVLSDFASWLKAKVLPSLPGIPFLSCQKGYKGEWRNDGIMNTKCPCGALIA
GHVKNGSMRIVGPKTCRNTWWGTFPINSHTTGPSSPVPSHCYQRALWRVSATEYVEILRH
NDQHYVVGVTAEDLKCPCQVPSPEFFSFVDGVRIHRFAPEPKPMIREEAAFVVGLHSYVV
GSQLPCEPEPDVQTVSQLLTDPSHITAETAARRLRRGSPPSNASSSASQLSAPSLKATHT
TLPQHPDAELIEANLMWEHKVGAIRRMETDTKVIILDSFDSASSVEDDMEPSTAAECLRT
RKVFPPAMPIWARPDYNPPVVENWKDPEYAPPQVSGCALPPAQTPPVPPPRRKRAVIQLT
ESAVSTALAELAERSFPKEEAPPSDSAISLDSPAANDPPSDCDQGSEISFSSMPPLEGEP
GDPDLSDGSWSTVSTRSDVICCSMSYSWTGALVTPSGPEEERLPINALSNTMLRHYNMVY
STTSRSASQRAKKVTFDRLQVLDDHYKRALADVKADASTVKAQLLSVEEAAALTPAHSAR
SKFGYGAKEVRSLAPKAMSHIKEVWKDLLQDMTTPIPTTIMAKNEVFCVNPAKGGKKPAR
LIVYPDLGVRVCEKRALYDIAQKLPKAIMGQAYGFQYSPSQRVEYLVKTWKSKRTPMGFS
YDTRCFDSTVTEQDIRTESEIYQCCNLDPEARTIINALTERLYVGGPMFNSKGQRVGYRR
CRASGVFPTSMGNTMTCYIKAKAAAAAAGLESTDFLVCGDDLVVICESKGVERDRADLQA
FAAAMTRYSAPPGDMPQPAYDLEHIDSCSSNVSVARDNSGKRVYYLTRDPTNPLSRAAWE
TARHSPVNSWVGNIIMFAPTIWVRMVLMTHFFALLLNEERLNDPVSFEMYGATYTVCPTD
LPDIIQRLHGLRAFELHTYSPAELTRVAATLRKLGVPPLRTWRQRARKVRAGLIGQGGRA
RICGLYLFNWAVRTKIKLTPLAGAGRLDLSSWFSVCAGEADVDHSTPRAHPRPLLLCLLL
LAVGVGIFLLPAR
NT seq 9042 nt   +upstreamnt  +downstreamnt
atgagcacgaatcctaaacctcaaagattaaccaaaagaaacaccgtccgtcgcccacag
aacgttaagttcccgggtggcgggcagatcgttggcggagtctacttgttgccgcgcagg
ggccctagattgggtgtgcgcggcactaggaagagttcggagcgatcgcagcccagggga
agacgccaacgtatccccaaagctgcctcttcacagggtaaagcctggggcaagcccggg
tacccttggcccctgtatggtaacgagggctgtggctgggcagggtggctcctgtccccc
cgcggctctcgacctacttggggccccacygacccccggcaccgctcgcgaaacctcggt
aaggtgatcgacaccatgacctgcgggtttgccgacctcatggggtacatccctgtccta
ggcgcccccctagggggcgttgccagggctctggcacatggtgttagagttctggaggac
ggggtcaactatgcaacagggaacttgcctggttgctccttttctatcttcytactagcc
ctcctgtcatgtctaacagtcccggcatcggcttatgaagtccgcaactccagtggrgtc
tatcatctcaccaatgactgccccaacgctagtatagtctatgaaacagacaacgccatc
ctacacgagcctgggtgcgtgccttgcgttcgcgagggtaatactagcaggtgttgggaa
ccagtggcccccactttggcggtccgctatcgcggagcgcttactgacgatttgcggacg
catattgacctagtggtggcgtcagctaccctgtgctccgccttgtacgtgggggacatt
tgtggagccatcttcattgccagccaagctgttctctggaagcccggggggggtcggata
gtgcaagattgcaattgttcgatctacccgggccacgtcaccggccacaggatggcgtgg
gacatgatgcagaactgggcgccggccttgtcaatggttgccgcttacgctgtgagagtg
cccggtgtcatcattaccactgtagcgggcggccactggggtgtgttatttggcctcgct
tactttggtatggcgggaaactgggcaaaggtaatactcatcatgctactcatgtccggc
gtcgacgcggaaaccatggccgtcggggctagggccgctcacaccactggcgcccttgtc
agcctgctcaatccagggcccagtcagcgcctgcagctgatcaacaccaatgggtcatgg
cacatcaaccggaccgctttgaactgcaatgactctttgcagacagggttcatagcggcc
ctcttctacacacataggttcaattctagtggctgtcccgagaggatggcttcttgtaaa
cctctcagtgactttgaccaggggtggggcccgctgtggtacaattcaacagaaagacct
tcggaccagcgaccctattgctggcactacgcgccatcgccgtgtggtattgtgccggct
aaggatgtttgcggtccggtctactgctttacaccaagcccggttgtggtgggcaccacg
gatcgccggggggtgcccacgtatacttggggtgaaaatgagtctgatgtcttcytgctc
aacagcacaaggccgccgcaaggcagttggtttgggtgctcatggatgaacacaacgggg
ttcacgaagacctgcggaggtcctccgtgcaagatacgtccccagggtgcccagagtaac
acctctctcacttgtcccacagactgcttcaggaaacatccgcgtgccacatactccgct
tgcggatctggtccgtggttgacacctagatgcatggtccattacccctatagactgtgg
cactacccgtgtacagtcaacttcaccatacacaaagtcaggttatacatagggggtgta
gaacataggctcgatgcagcgtgcaattggacgcggggtgagcgatgcgacctggaggac
cgagacagggtggacatgtcccccctgctccattccactacggagctcgcaatacttccg
tgttcctttgtgccgcttccggccttatctacgggactgatccacctgcaccaaaacatc
gttgacgcccagtacctttatggtctttctcccgctataataagctgggccatcagatgg
gagtgggtagtcctcgttttcctactcctggcggacgcgcggatctgcgcctgcctttgg
atgatgatgcttatggcccaggctgaagccgctctggagaacttgatccacctcaacgcg
gccagccttgcgggaacccatggtatctggtggctccttttagtcttttgtgcctcttgg
catctacgaggcagggttgtccctctggtgacgtatgggatatgcgggatgtggcccttc
ttcctcatgttgctgagcctccccccacgagcgtatgctctggacagggaagtgagcgca
gcgttgggaacgggcatgctcgccatcatcctattagttaccttgggaccgcactacaag
agacttctagcccttattctctggtgggtcacatatttccttacaaggtgtgaagcagca
ctccaaacgtgggtccctcctctcaaccctcgggggggcagggacggtttcatcctgtgt
gtgctgctgtgctatccaggccttgtctttgacatcacaaaatggttgctggtcatgatg
tgccctctctacctcctccagttgtgtttggtgaggactccatactttgtgagggcccag
gccctcatcagagtgtgttctctcttcaaaacgctagctgggggacggtacgtgcaggcc
gcgctgctcactattggccgctggaccggcacttatatttataaccatctcgcccccctg
gaaacatgggccgccggcggcctacgggatttggccgttgcagtcgagcccgtgatattc
tcccccatggagaagaagatcatagtttggggggcggagaccactgcttgtggcgacatt
ctttgtggcctgcctgtctcagctcggctcggcagggaagtcctgctagggcccgcggat
gactacaggtccatgggatggcaactcctggctccaatctcagcatacgcacagcagacc
cgcggtctcatctctacccttgtcgtgagcctcactggccgtgataagaacgagactgcc
ggcgaggtgcaggtgttgtccacctcaacgcagaccttcctggggaccaatgtgggcggt
gtcatgtggggaccttatcacggagcgggcacgcggactgtggccggccggggtgggcct
gtcctccagatgtacacgtcagtcagtgacgatctggtgggctggcctgccccgcctggc
tccaagtccctcgagccctgctcgtgcgggtcagcagacctttacttggtgacgcgcaat
gctgacgtccttcctcttaggaggaagggtgacggtacagcgtccctactgtccccgcgc
cctgtgtcctcccttaaaggctcctcgggagggcctgtcttgtgcccccaaagtcattgc
gttggcatcttcagagctgctgtctgcacccgcggtgtagccaaagcagttcagtttgtt
cccatcgagaagatgcaggtggcccagaggtcgccatcattcagtgacaatagcacccct
ccagcggtgcccagcacctatcaagtaggctatttacatgcccccactggcagcggcaag
agcactaaggtccctgcggcgtatgccagccagggctacaaagtgctcgtgcttaatcca
tcagtcgcggccacccttgggtttggtgcctacatgtccaaggcttatggaattgatcca
agtgtgcgcaccggcgcgcgcacggtgaccacgggggctcccataacttactcaacctat
gggaagttccttgccgacgggggttgttcaggtggtgcctatgatataatcatatgtgat
gaatgccatgccatcgatgctaccaccgtggtcggcataggcaccgtgttggaccaggca
gagactagtggtgtccgacttgtggtgctagctacggccaccccccccggaagcgttacg
gtgccccaccccaacatcgaggaggtcgcccttggcaacgatggggaaattcccttctat
gggaaagccatccccctgcaacacatcaaggggggaaggcatctcattttctgtcattcc
aaaaagaaatgtgatgagcttgccgggaagctcacctcattggggctgactgccgttgct
tactatagggggttggatgtttcggtgatcccaacgtctggcgatgtagtcgtggtggct
actgatgccttgatgacgggctttaccggagacttcgactccgtcatagactgcaacgtg
gcggttacccagactgtagacttctccttggaccccaccttcactattgagaccaccaca
gtcccgcaagattctgtctcgcgctctcagagacgtgggaggacaggtaggggcaggctt
ggcatctacagatacgtgtccagtggcgagcggccatccggtatgttcgacaccagcgtg
ctctgtgagtgctatgacctggggtgctcgtggtatgaactaacgcccagtgaaaccacc
acgcgcctcagagcctacctcaattgccctggtcttccagtgtgccaagaccatctggag
ttctgggagggcgtctttacgggacttactcatattgatgcacacttcctgtcccagacc
aaacaagagggccaaaattatgcgtacctgactgcataccaagctacagtgtgcgcccgg
gcgaaagcccccccgccctcctgggacgtccagtggaagtgtctccaaagactaaagcca
ctgttagtagggcccacgcccttgctatacaggctaggcagtgttaccaatgaagtcaca
ttcactcatcccatcaccaaatacattgccacgtgcatggctgccgacttggaggtcact
acgagcacctgggtgatcgtaggtggcgtcctcgccgccgtggccgcatattgcatgtct
actggcagtgttgttgtggttggccgtgtggtccttggatccaacgtggtgacggccccc
gacagagaggttttataccagcactttgatgagatggaagagtgctccaaagctcctgaa
ttgctgaaacacgcccaaaccatcggcggaatgttcaaggacaaggccctcgccgtcttg
gatacgctcaagccggccgcccaggctgctgttcccattgtggagaccaacttccaaaag
gtggagaagctgtggaatcagcatatgtggaacttcataagcggcattcaatacctagct
gggctatccacactgccaggtaatccaactgtggcctcactgatggccttcaccgcctca
gttactagcccccttgctacatcgaccacactactagtcaacatcctgggtgggtggttc
gcaagccagttagcgccgccgtctgctgccacgactttcgtggtctcgggcctcgcaggg
gcggcagtgggtagtgttggcttgggcaaggtcttagttgatgtcctggccggctatggc
gccggcatagctggcgccctggtggccttcaaaatcatgtctggagaggtccctagcaca
gaggatctggcaaacctcttacctgccatactctcacctggagctttagttgtgggagtt
gtttgtgccgcgatcatcaaacggcataccggcactagtgagggagtcacgcagtggatg
aaccgtctcattgcgttcgcctcccgtggaaatcacgtgtcgccgacccactacatacag
gatgatgatgcgtcaaaacgcgtcatggggatactcagctcccttaccatcaccagcctc
ataaaacgagtactggcctgggcgcagactgaytattctgcgccctgtgccgggagctgg
ctccgggaggtgtgggactgggtttgcatggtcctatccgactttgcatcttggttgaag
gccaaggtacttcccagccttccagggatcccattcctatcctgtcagaaagggtataaa
ggtgagtggcggaacgatggcatcatgaacaccaagtgcccgtgtggggccctgatagca
gggcacgtcaagaacggatcgatgcgcatcgtgggccccaagacctgccgaaacacctgg
tggggaaccttccctattaattcccataccacgggaccaagttctcctgtaccctcccay
tgttatcaaagggccttgtggagggtatctgcracggagtacgtcgagatccttcgtcac
aatgaccagcattaygtggtgggagtgacggcggaggacctcaagtgcccgtgtcaggtt
ccttcccccgaattcttcagctttgtggacggggtgcggatacacagattcgcccctgaa
cccaagcccatgatccgggaagaagccgctttcgtggtgggtctgcactcatatgtggtg
gggtctcagctcccttgtgaaccggagccggacgtccaaactgtctcgcagctcctaacc
gacccctcacacatcaccgcagaaaccgcggctagaaggctcaggagaggttccccccca
tccaacgccagttcttctgctagtcaactctcagctccatctctaaaagccacccacaca
actctgccacaacatcctgacgcagaactgatagaggccaacctcatgtgggaacataag
gttggtgccatcagaaggatggagacagacaccaaagtcatcatacttgactcctttgat
tcagcttcttccgtygaggatgacatggaaccgtccaccgccgcggagtgtctgcgtacg
cgtaaggtcttcccaccggccatgcccatatgggcgaggccagactacaatcctcctgtt
gtggagaattggaaggaccccgagtacgcacctccccaggtgtctgggtgcgctctacca
cctgcgcagacccctcctgttccaccacccaggcggaagcgggcggttatccaactcaca
gagtccgcggtttccacggcactggcggaactcgctgagaggtccttcccaaaggaggag
gcaccccccagcgactccgccattagtctggattcaccggcggcaaatgaccctccatct
gattgtgaccaaggcagtgagatctctttctcatccatgccacccctagagggggagccg
ggtgatccagacttgtctgatggctcttggtcaacagtcagcaccagatctgacgtgatt
tgctgttccatgtcctactcatggacgggagccttagtgacgccctccggtccggaggag
gaaaggctcccaataaatgccctyagtaacaccatgcttcggcattataacatggtttac
agcacaacatcacgctcagcttcacaaagagcaaaaaaagtgacttttgacagattgcaa
gtcctagacgaccactacaaaagggcgctcgccgacgtgaaagcggatgcttccacggtt
aaggcgcagttgctctcagtagaggaagctgctgccctcacccctgcccactcagccaga
tctaagtttgggtacggggcaaaggaagtcagatctcttgcgcccaaggcaatgtctcac
atcaaagaggtctggaaggacttgctacaggacatgaccaccccgataccgaccaccata
atggccaagaatgaagtcttctgcgtaaatcctgccaagggcgggaaaaagccagctaga
ctgattgtttaccctgacctaggtgtgagggtatgcgagaagcgggctttgtacgacata
gctcaaaagcttccgaaggccataatggggcaggcgtacgggttccaatattcaccatcg
cagcgggtcgartacytagttaagacgtggaagtccaaacggactcccatgggcttctca
tatgacacccgctgctttgattccactgtcacagaacaagacatccgcactgagagcgag
atctatcagtgctgcaacctcgaccccgaggctcgcaccatcattaacgcccttaccgag
aggttgtacgtggggggacccatgttcaactctaaaggtcagagggtcggttatcgaagg
tgcagagccagcggagttttccccaccagcatgggaaacactatgacgtgctacatcaaa
gccaaagcggctgcagcagctgcagggctagagagcactgatttcctggtctgcggcgat
gacttggtggtcatttgcgagagcaagggagtcgaacgggatagggcggacctgcaagcc
tttgcagcggcaatgaccaggtactccgctccacccggggacatgccccagcccgcttat
gaccttgagcacattgactcttgctcatccaatgtctcagtcgcccgggacaactcgggg
aaaagagtctactacctcactagagaccctaccaacccactatccagggcagcttgggag
accgcccgtcactcacctgtaaactcctgggtgggcaacataatcatgtttgcccccacc
atatgggtgaggatggttctcatgactcactttttcgctctcctcctcaatgaggagcga
ttgaacgatccagtgagttttgagatgtatggtgcaacctacacggtctgcccaacagac
ttaccagacattatacaaagactccatgggctccgcgcatttgaactccatacttactct
ccagcagaactgacgcgggtggcagctaccctcaggaagcttggggtgccacccctcagg
acctggagacaacgggctcgcaaggtccgcgcggggctgataggccaggggggcagggct
cgcatatgcggtctctacctcttcaactgggctgtcaggaccaagatcaaactcactcca
cttgcaggcgctggccggctcgatctttcgagctggttcagcgtttgcgccggcgaggcg
gacgtggatcacagcacgcccagagcccatcctcgcccattactcctgtgcctactccta
cttgccgtaggggtaggcattttcctcctacccgctcggtaa

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