Viruses: 37627206
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Entry
37627206 CDS
T40000
Symbol
L, D1Y42_gp6
Name
(RefSeq) avian paramyxovirus 1; large polymerase protein
Virus
2560319
avian paramyxovirus 1
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Mononeg_RNA_pol
Mononeg_mRNAcap
OspG_kinase
Motif
Other DBs
NCBI-GeneID:
37627206
NCBI-ProteinID:
YP_009513199
RS:
NC_039223
UniProt:
C9EIK1
LinkDB
All DBs
Position
NC_039223:8387..15001
AA seq
2204 aa
AA seq
DB search
MAGSGPERAEHQIILPESHLSSPLVKHKLLYYWKLTGLPLPDECDFDHLIISRQWKRILE
SATPDTERMIKLGRAVHQTLNHNSKITGVLHPRCLEELANIEVPDSTNKFRKIEKKIQIH
NTRYGDLFTKLCTHVEKKLLGSSRSNNVPRSEEFSSIRTDPAFWFHSKWSRAKFAWLHIK
QVQRHLIVAARTRSAVNKLVTLSHKIGHVFVTPELVIVTHTDENKFTCLTQELVLMYADM
MEGRDMVNIISSTAAHLRNLSEKIDDILRLVDALAKDLGNQVYDVVALMEGFAYGAVQLL
EPSGTFAGDFFAFNLQELKDTLIELLPNNIAESVTHAIATVFSGLEQNQAAEMLCLLRLW
GHPLLESRSAARAVRSQTCAPKMVDFDMILQVLSFFKGTIINGYRKKNSGVWPRVKVDTI
YGNIIGQLHADSAEISHDVMLREYKSLSALEFEPCIDYDPVTNLSMFLKDKAIAHPSDNW
LASFRRNLLSEDQKKQIEEATSTNRLLIEFLESNDFDPYKEMEYLTTLEYLRDDSVAVSY
SLKEKEVKVNGRIFAKLTKKLRNCQVMAEGILADRIAPFFQGNGVIQDSISLTKSMLAMS
QLSFNSNKKRIADCKERVSSNRNHDQKSKNRRRVATFITTDLQKYCLNWRYQTVKLFAHT
INQLMGLPHFFEWIHLRLMDTTMFVGDPFNPPSDPTDCDLSRVPNDDIYIVSARGGIEGL
CQKLWTMISIAAIQLAAARSHCRVACMVQGDNQVIAVTREVRSDDSPDMVLTQLHQASDN
FFKELIHVNHLIGHNLKDRETIRSDTFFIYSKRIFKDGAILSQVLKNSSKLVLISGDLSE
NTVMSCANIASTVARLCENGLPKDFCYYLNYLMSCVQTYFDSEFSITHSSQSDSNQSWIE
DISFVHSYVLTPAQLGGLSNLQYSRLYTRNIGDPGTTAFAEVKRLEAVGLLSPSIMTNIL
TRPPGNGDWASLCNDPYSFNFETVASPSIVLKKHTQKVLFETCSNPLLSGVHTEDNEAEE
KALAEFLLNQEVIHPRVAHAIMEASSVGRRKQIQGLVDTTNTVIKIALTRRPLGVKRLMR
IINYSSMHAMLFRDDIFLSNRSNHPLVSSNMCSLTLADYARNRSWSPLTGGRKILGVSNP
DTIELVEGEILSVSGGCTKCDSGDEQFTWFHLPSNIELTDDTSKNPPMRVPYLGSKTQER
RAASLAKIAHMSPHVKAALRASSVLIWAYGDNEVNWTAALNVARSRCNISSEYLRLLSPL
PTAGNLQHRLDDGITQMTFTPASLYRVSPYVHISNDSQRLFTEEGVKEGNVVYQQIMLLG
LSLIESLFPMTTTRTYDEITLHLHSKFSCCIREAPVAVPFELLGLAPELRMVTSNKFMYD
PSPISERDFARLDLAIFKSYELNLESYSTLELMNILSISSGKLIGQSVVSYDEDTSIKND
ATIVYDNTRNWISEAQNSDVVRLFEYAALEVLLDCAYQLYYLRVRGLNNIVLYMNDLYKN
MPGILLSNIAATISHPIIHSRLNAVGLINHDGSHQLADIDFVEVSAKLLVSCTRRVVSGL
YAGNKYDLLFPSVLDDNLNEKMLQLISRLCCLYTVLFATTREIPKIRGLSAEEKCSILTE
YLLSDAVKPLLRPEQVSSIMSPNIITFPANLYYMSRKSLNLIREREDRDTILSLLFPQEP
LLELRPVRDIGARVKDPFTRQPASFIQELDLSAPARYDAFTLSKVCFEHTLLNPKEDYLV
RYLFRGIGTASSSWYKASHLLSVPEVRCARHGNSLYLAEGSGATMSLLELHIPHETIYYN
TLFSNEMNPPQRHFGPTPTQFLNSVVYRNLQAEVPCKDGYVQEFCPLWRENAEESDLTSD
KAVGYITSVVPYRSVSLLHCDIEIPPGSNQSLLDQLATNLSLIAMHSVREGGVVIIKVLY
AMGYYFHLLMNLFTPCSTKGYILSNGYACRGDMECYLIFVMGYLGGPTFVHEVVRMAKTL
IQRHGTLLSKSDEITLTKLFTSQQRRVTDILSSPLPKLMKLLRENIDAALIEAGGQPVRP
FCAESLVSTLIDMTQTTQIIASHIDTVIRSVIYMEAEGDLADTVFLFTPYNLSTDGKKRT
SLKQCTKQILEVTILGLRAKDINKVGDVISLVLRGAVSLEDLIPLRTYLKRSTCPKYLKA
VLGITKLKEMFTDTSLLYLTRAQQKFYMKTIGNAAKGYYSNNDS
NT seq
6615 nt
NT seq
+upstream
nt +downstream
nt
atggcgggctccggtcccgaaagggcagagcaccagatcatcctaccagagtcacatcta
tcctctccattggtcaagcacaaattgctatactactggaaattgactgggctaccgctt
cctgatgaatgcgactttgatcatctcattatcagcaggcaatggaagagaatactggag
tcggccactcctgacacagagagaatgataaaactcgggcgggcagtgcaccagactctc
aaccacaattccaagataaccggagtgctccatcccaggtgtttagaagaactggctaat
attgaggtcccagattcaactaacaaattccggaagattgaaaagaagatccagattcac
aacacaaggtatggagacctgttcacaaagctgtgcacgcatgttgagaagaaattgcta
ggatcatcccggtctaataatgtcccacgatcagaggaattcagtagcatccgtacagat
ccggcattctggtttcactcaaaatggtccagagccaagttcgcgtggctccatataaaa
caagtccaaaggcatctgattgtggcagcaaggacaaggtctgcagtcaacaagttagta
acattaagtcataagataggccacgtctttgttactcctgagcttgtcattgtgacacat
acagatgagaacaagttcacatgcctcacccaggaacttgtattgatgtatgcggatatg
atggaaggcagggacatggtcaatataatatcttctacagcagcacatctcagaaaccta
tccgagaaaattgatgatattctgcgattagtagatgctctggcaaaggacttaggtaat
caagtctatgacgttgtagcattaatggagggattcgcatacggtgccgttcagctgctt
gagccatcaggtacatttgcaggagatttctttgcatttaacctacaggagctcaaagac
actttaatcgaacttctcccaaataatatagcggaatcagtaactcacgctattgccact
gtattctccggcttagaacagaatcaagcagctgagatgttgtgcttgctacgtttgtgg
ggtcacccattgcttgagtctcgtagtgcagcaagagcagtcaggagccagacgtgcgca
ccaaagatggtagacttcgatatgatcctccaggtattatctttctttaaaggaacaatc
atcaatggatacagaaagaagaactcaggtgtgtggccgcgtgtcaaagtagatacaata
tacgggaatatcattgggcagctacatgctgattcagcagagatctcacatgatgtcatg
ttgagggagtacaagagtttatctgctcttgaatttgagccatgtatagattatgaccct
gttaccaatctaagcatgttcctaaaagacaaggcaatcgcacatcctagtgataattgg
ctcgcctcatttaggcggaacctactctctgaggaccagaagaaacagatagaagaggca
acttcaactaaccgcctcctgatagagttcttagaatcaaatgattttgatccatataaa
gaaatggaatacctgacaaccctcgagtacctaagagatgacagtgtggcagtatcgtac
tcactcaaagagaaagaggtgaaagtgaatgggcggatttttgctaagttaacaaagaaa
ctaaggaactgccaggtaatggcagaaggaattctagctgaccggattgcacctttcttt
cagggaaatggggtcattcaagatagcatatccttgacaaagagtatgttagcgatgagt
caactgtcctttaacagcaataagaaacgtatcgctgactgcaaagagagggtttcctca
aaccgcaatcatgatcagaagagcaagaatcgtaggagagttgccacttttatcacgact
gacctacaaaagtattgtcttaactggagatatcagacagtcaaactattcgcccatacc
atcaatcagctgatgggcctacctcatttctttgagtggattcatcttaggctgatggac
actacaatgtttgtaggggatcctttcaatcctccaagtgacccgactgactgtgatcta
tcaagagtcccaaatgatgacatatatattgtcagtgctagagggggcattgagggactc
tgccagaagctatggacgatgatctcaattgctgcaatccaacttgctgcagcaagatct
cattgtcgagttgcctgcatggtacaaggtgacaatcaagtaatagctgtaacgagagag
gtaagatcagatgattccccggatatggtgttgacgcagttgcatcaagctagtgataat
ttcttcaaggaattgattcatgtcaatcatctgattggccataacctgaaggatcgtgaa
accattagatcagacacattcttcatatacagcaaacgaatattcaaagatggagcaata
ctcagtcaggtcctcaaaaattcatctaaattggtgctaatatcaggcgaccttagcgaa
aacactgtaatgtcctgtgccaacattgcatccactgtagcacgactatgtgagaatggg
cttcctaaggatttctgttactatttgaactacctaatgagttgcgtgcagacatacttt
gattcggagttttctattacccacagctcgcaatcagattccaaccagtcctggatcgag
gatatctctttcgtacactcatacgtgttaacccctgcccagctggggggactgagcaac
cttcaatactcaaggctctacacaaggaatattggtgacccagggaccactgctttcgca
gaggtcaagcgactagaagcagtggggttgctgagtcccagcatcatgactaacatctta
accaggccacctggcaatggagactgggccagcctatgcaacgacccatactcttttaat
tttgagactgttgcaagcccaagtattgtcctcaagaaacatacacagaaagtcctattt
gagacatgttcaaaccccttattatccggggtacatacagaggacaatgaggcagaagag
aaagcattggctgaattcttactcaatcaagaagtgattcacccacgtgtcgcacatgct
atcatggaagcaagctctgtgggtaggagaaagcaaattcaagggcttgttgacacaacg
aacactgtgataaagattgcactgactaggaggcccctcggtgtcaaaaggctgatgcgg
ataatcaattactcgagcatgcatgcaatgttgttcagagatgatattttcttatccaat
agatccaaccacccattagtttcttctaatatgtgctcgctgacgctagcagattatgcc
cggaacagaagctggtcacccctgacagggggcaggaaaatactgggtgtatccaacccc
gataccatagaacttgtggagggagagattctcagcgtcagtggagggtgcacaaaatgt
gacagcggagatgagcagtttacttggttccatcttccaagcaatatagagctgactgat
gacaccagcaaaaatcccccgatgagagtgccatatctcgggtcgaagactcaagagagg
agagctgcctcgcttgcgaaaatagcccacatgtcaccacatgtgaaagcagcactaagg
gcatcatccgtgttaatctgggcttatggggacaacgaagtgaactggactgctgctctt
aatgttgcaaggtctcgatgcaacataagctcagagtatcttcggctactgtcacccctg
cccacagctgggaatctccaacatagattagatgatggcataacccagatgacatttacc
cctgcatctctctacagagtgtcgccttacgttcacatatccaatgattctcaaaggcta
ttcaccgaagaaggggtcaaagagggaaacgtggtttaccaacaaattatgctcttgggt
ttatctctaattgaatcactcttcccaatgacaacaaccagaacatatgatgagatcaca
ttacacctccacagtaaatttagctgctgtatccgagaagcgcctgttgcggttcccttc
gagctcctcgggctggcaccggaattaaggatggtaacctcaaataagttcatgtatgat
cctagccctatatcagagagagattttgcgagacttgacttagctatcttcaagagttac
gagcttaatttggaatcatattccacgctggagctaatgaacattctttcaatatctagc
gggaagttgattggccaatccgtggtttcttatgatgaagatacttctataaagaatgat
gctacaatagtgtatgacaacacacgaaattggattagtgaggcgcagaactcagatgtg
gtccgcctgtttgagtatgcagcactcgaagtgctccttgactgtgcttatcaactctac
tatctgagggtaaggggtctaaacaacatcgtcttatacatgaatgacttatataagaac
atgccagggatcctactctccaatattgcggccacgatatcccaccccatcattcactca
aggttgaatgcagtaggcctaattaaccatgacgggtcacaccagcttgcagatatagac
ttcgtcgaggtgtctgcgaaattgttagtctcttgcactcgacgcgtggtctcaggctta
tatgcagggaataagtacgatctgctgtttccatctgtcttagatgataacctgaatgag
aagatgcttcaactgatttcccggttatgctgtctgtacacagtgctctttgctacaaca
agagaaatcccaaaaataaggggcctatcggcagaagagaaatgctcgatactcactgag
tatctactgtcagatgctgtaaaaccattgcttaggcccgaacaagtgagttctatcatg
tctcccaacataatcacgttcccagccaatctatattacatgtctaggaagagccttaat
ttgatcagagaacgagaggacagagatactatcttgtcattgttgttccctcaggaacca
ctgcttgagcttcgcccagtacgagacattggtgctcgagtgaaagacccgtttacccga
caacccgcatcattcatacaagagctagatctgagtgccccagcaaggtacgacgcattt
acactgagtaaggtttgcttcgagcatacattactgaacccaaaggaagattacctagta
cggtacttgttcagaggaatagggactgcttcatcttcttggtataaggcatctcatctt
ctatccgtacctgaggtcaggtgtgcaagacatgggaactccttatacttagcggaagga
agcggagccaccatgagtcttcttgaattgcatataccacatgagactatctattacaat
acacttttctcgaatgagatgaaccctccacagcgacatttcggacctacaccaacacag
tttctaaactcggtcgtttataggaatctacaagcggaagtgccatgtaaagatggatat
gtccaggagttctgcccattatggagagagaatgcagaagaaagtgacctgacctcagat
aaggcagttggatatatcacatctgtggtaccctacaggtctgtatcattactacattgt
gacattgagattcctccagggtccaatcaaagcttattagatcaactggctactaattta
tccctgattgccatgcattctgtgagggagggcggggtagtaatcatcaaagtactgtat
gcaatggggtactacttccatttactcatgaatttattcactccatgttccacgaaagga
tatatactctccaatggctatgcctgtagaggggatatggagtgttacctgatattcgtt
atgggctacttaggcgggcccaccttcgtgcacgaagtggtaaggatggcaaaaactcta
atacaacgacacggtacacttctatctaaatcagatgaaattacattgactaagctattt
acctcacagcagcgtcgtgtaacagatatcctatccagccctttaccgaagctaatgaag
ctcttgagagaaaatattgatgctgcactaattgaagccgggggacagcccgtccgtcca
ttctgtgcggaaagtttggtgagcacactaatagatatgacccagacaactcagatcatt
gccagccacattgacacagtcattcggtctgtaatttacatggaggctgagggtgacctc
gccgacacagtgttcttatttactccttacaatctatccacagacggtaaaaagagaaca
tcacttaagcagtgcaccaaacagatcttggaagtcacaatactgggtctcagagccaaa
gatatcaataaagtaggtgatgtaatcagtttagtactcagaggtgcggtttccctagag
gacctcatcccattaaggacatacctgaagcgcagtacctgccctaaatacctgaaagcg
gtcctaggtattactaaactcaaagaaatgttcacagatacctcgttactgtacttgact
cgtgctcaacaaaaattctacatgaaaaccataggtaatgctgccaagggatattacagt
aataatgactcttaa
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integrated database retrieval system
