Viruses: 39105317
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Entry
39105317 CDS
T40000
Symbol
ORF1, D9V40_gp1
Name
(RefSeq) Norovirus GII; nonstructural polyprotein
Virus
122929
Norovirus GII
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C37
Calici_PP_N
RdRP_1
RNA_helicase
nSTAND3
VPg
AAA_16
Zeta_toxin
RdRP_4
RdRP_2
NB-ARC
NACHT
AAA_18
AAA
AAA_33
AAA_25
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
39105317
NCBI-ProteinID:
YP_009518841
RS:
NC_039477
UniProt:
A0A2U9GMB7
LinkDB
All DBs
Position
NC_039477:5..5104
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AA seq
1699 aa
AA seq
DB search
MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPASRDESQKPPRPP
TPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLREN
REAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELTPLSLYWRVVYT
PQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQEW
NRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDWTFAGIVE
SLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKI
GKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIEN
NHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALLARIAAARSLVHRA
KEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVGLIPRNGVDHWDAYKG
ERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKVFDSEVIIITTNLANPAP
LDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFD
KNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAA
ENKYGLVDTMKVGNQLKGVKTMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEK
VKNTSVQTNNELAGALHHLKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQEL
WSKPQLDQNESETKEEAPKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDE
EYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRK
QRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSF
GSGWGFWVSPSLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMI
LEEGAPEGTVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDL
GTTPGDCGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGA
PILGPGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFT
EPRGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTR
PDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMI
PHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLS
TWEGDRNLAPNFVNEDGVE
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggcgtctaacgacgctaccgttgccgttgcttgcaacaacaacaacgacaag
gaaaaatcttcaggtgaaggcttattcacaaatatgtcttccaccttaaagaaagccctc
ggggctaggcccaaacagcctgcctcgagagacgaatcacaaaagcccccaagaccacca
actcccgagttggtcaagaggataccccctcctccacctaatggcgaagaagaagaagaa
ccagtcattaggtatgaggttaagagtgggatctctggcctgcccgagctcacaacagtc
ccccaaccggacgtggccaacacagcattcagtgttccaccactgagcttgagagaaaac
agggaggccaaggaaccgctaacaggggcaatattagagatgtgggatggagagatatac
cactatggcctgtacgtggagaaaggcttagtgttgggtgtgcacaaaccacctgcagcc
ataagcatggcaagagtggagctgacgccgctgtcattgtactggcgtgtggtgtacact
ccccaatacctcatctcccctgaaactctcaggaggctcaacggagaggcgttcccttac
accgccttcgacaacaactgctatgccttttgctgctgggtgttagacctcaatgactca
tggcttagcaggaggatggtgcaaagaacaacgggcttcttcagaccttaccaagagtgg
aacagaaaacccctgcctaccatggatgactccaaaattaagaaggtagcaaatatattc
ctatgttcattgtccacattattcaccagacccataaaagacctcataggaaaaattaaa
ccattaaacatattgaacatcctggcaacgtgtgactggacgtttgccggaatagtggag
tctctgatattacttgctgaactcttcggagttttctggacacccccagatgtgtctgct
atgatcgctcccttactcggggactacgagttgcaagggccagaagacctcgccgttgaa
ctcgtacctgtggtaatgggagggattggtttggtgttgggattcaccaaagagaaaatt
ggcaaaatgttgtcctcagcagcatcaacactcagggcttgcaaagatcttggtgcctat
ggcttagagatactcaaattggtcatgaagtggttcttcccaaagaaagaggaggccaac
gagctagccatggtgagggccatagaggatgccgtactagatcttgaggcaatagaaaat
aaccacatgacaaccctgttgaaagacaaagacagcttagcaacatacatgaaaacactg
gacatggaggaggagaaagccagaagattgtccacaaaatctgcatcccctgacatagtt
gggacaatcaacgccctgctggctcgaatagcagcggccaggtcattagtccacagggcc
aaggaagagctatctagcaggataagaccagtagttgttatgatatctggcaaaccagga
ataggcaaaactcatctggccagggaggtggcaagaaaggtggcatccactctcacaggg
gatcaaagagtcggactcataccaagaaacggtgtggaccattgggatgcatacaaaggt
gagagagtcgtgctgtgggacgactatggcatgagtaaccccattcatgatgctcttcgc
atacaagaattggctgatacgtgtccccttaccttaaattgtgacagaattgaaaataag
ggaaaagtttttgacagtgaagtcataataattacaacaaaccttgccaatccagcccca
cttgattatgtcaactttgaggcctgttccaggagaattgatttcctggtgtacgctgag
gcaccagaagtagaaaaggcaaaacgggactttcctggtcagccagatatgtggaaggac
gccttcaagccggacttttcacacatcaagctacagcttgcacctcagggcggctttgac
aagaatggcaacaccccacacgggaaaggagtgatgaagaccctcactaccggttctctg
attgcccgtgcatcaggcctactgcatgagaggatggatgaatttgaactccaaggtccc
acaatcaccaccttcaatttcgaccggaacagaatcacagcattcaggcaattggctgca
gaaaacaagtatggattggtggataccatgaaagttggcaatcaactaaaaggagtgaaa
accatggaagaactcaaacaagcaattaggaatgtgaccatcaagaggtgccggatcatc
tacggtggctccacgtatgaccttgaatctgatggcaagggcaaagttttggtggaaaag
gtcaagaacacctctgtgcagaccaacaacgagttggccggggccctgcaccatctcaaa
cacgcccgaatcaggtactatgtcaaatgtgtgcaagaagcagtctattccatcatacaa
atcgccggcgctgcgtttgtcaccacgcgcattgcacgccgcatgaacatacaagaactc
tggtcgaagccacaattagatcaaaatgaatcagagactaaggaagaggcccccaagtca
gaagatgacgagttcatcatatcttctaaggacatcaaggaggaaggaaagaagggcaaa
aacaaaactggccgtggcaagaaacacactgcattctccagcaagggtttgagcgatgag
gagtatgacgagtacaagaggataagagaagagagaaatgggaagtactctatagaggag
tatcttcaagacagagacaggtactatgaggagctcgccattgccaaggccacggaagag
gatttctgtgaagaggaggagatcaaaatccgccagagaattttccgtcccaccaggaaa
caaagaaaggaagagagggccacattagggctagtaacaggttcggaaatcagaaaaaga
aaccctgatgacttcaaacccaaagggaagctgtgggccgatgacaacagaagtgttgac
tacaatgagaaactggactttgaggcccccccaagcatatggtctaggattgtgagcttt
ggttctggctggggcttctgggtatcaccaagcctgttcataacatcaactcatgtaatc
cccgcaggcataacagaagcgtttggagtccccatcaaacaaattcagatccacaaatca
ggtgaattttgccgattcagattcccaaaaccaattagaccagatgtgacaggaatgatc
ttggaagaaggtgcgcctgaaggcaccgtggcaactgtgctcatcaaacgccccaccgga
gagctcatgcctcttgcagccagaatgggaacacacgcaaccatgaaaattcaaggccgc
atggttggcggacagatgggtatgttgctcactggatcaaatgctaaaggaatggacttg
ggaacaactcctggtgactgtggctgtccttacatctataaaaggggcaatgactatata
gtcattggggtgcacactgcagcagcccgtggtggaaacaccgtcatttgtgccacacag
ggaagtgagggtgaggcaactcttgagggtggagatgacaaaggaacatactgtggggca
cccattctaggccctgggggtgcaccaaaattgagcaccaaaaccaaattttggaggtca
tcgaacacgccccttccaccagggacatatgagcctgcctacctcggtggccgtgacccg
cgtgttaagggtgggccctccttgcagcaggtaatgagagaccagttgaagccattcact
gaacccaggggcaaacctccaagaccaagtgtattggaagcagccaaacaaaccattatc
aatgtcctcgaacaaaccctggaccctccacaaaaatggacatacgcacaggcgtgtgcc
tcacttgacaaaaccacctccagcgggcatccccatcacgtccgaaagaatgaattctgg
aatggtgagaccttcactggtaaattggcagaccaagcatcaaaagcaaacctaatgttt
gaggaagggaaacacatgacaccagtgtatacagcagcactcaaggacgagctagtcaag
actgagaaaatctatggaaagatcaagaagagactgctctggggctctgacttgtccacc
atgatccggtgcgctaggtcatttggtggactcatggacgagatgaaggcacactgcata
tcactcccagtacgagttggcatgaatatgaatgaagatggcccaataatatttgagaaa
cattccagatacaaataccactatgatgcagactactctcgttgggattcaacacaacag
agggcagtgctagcagcagccttggaaatcatggtcagattctctgcagaaccacaattg
gcacaaatagtcgctgaggatctgctggcccctagtgtagtagatgtaggagactttaaa
atcacaataaatgaagggctcccatctggtgtgccatgcacttctcaatggaactccatc
gcacactggctgctaactctctgtgccttgtctgaagtcaccaaactgtcccctgacatt
atacaagcaaattccatgttctcattttacggtgatgacgagattgtcagcaccgacata
aaattggaccctgaacagttaaccgccaagttgaaggagtacggcctgaaaccaacccgc
ccagacaagaccgagggacccctgatcatcagtgaagatttgaacggactcactttcctc
cgaaggacggtgactcgtgacccagctggctggtttggaaaactggaccaaagctcgatt
ttgaggcagatgtactggactagaggaccaaatcatgaagaccccaatgagacaatgata
ccccattctcaaagacccatacagctcatggcactgcttggtgaagcctctcttcacgga
ccctctttctacagtaagatcagtaaattggtcataactgaactcaaagaaggtgggatg
gacttttacgtgccaaggcaggaacccatgttcaggtggatgaggttttctgacttgagc
acgtgggagggcgatcgcaatctggctcccaatttcgtgaatgaagatggcgtcgagtga
DBGET
integrated database retrieval system
