Viruses: 41854841
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Entry
41854841 CDS
T40000
Symbol
ORF1, F7P58_gp1
Name
(RefSeq) Norovirus GI; nonstructural polyprotein
Virus
122928
Norovirus GI
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C37
Calici_PP_N
RdRP_1
RNA_helicase
nSTAND3
AAA_33
Zeta_toxin
VPg
AAA_5
AAA_18
SRP54
AAA
NLPC_P60
Rad17
AAA_22
RuvB_N
KTI12
Motif
Other DBs
NCBI-GeneID:
41854841
NCBI-ProteinID:
YP_009700096
RS:
NC_044854
LinkDB
All DBs
Position
NC_044854:5..5371
Genome browser
AA seq
1788 aa
AA seq
DB search
MMMASKDVVATNVASNNNANNTSATSRFLSRFRGLGGGASPPNPIKIKSTEMALGLIGKT
TQEVAGTSDLPPKQQRDRPPRTQEEVQYGLGWTERPMDQNVKSWEELDTTTKEEILDSHK
EWFDAGGLGPCTMPSTCEQAKDDSPPGEQVKWSVRDGVNLGVNRLTTVSGPEWNLCPLPP
IDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSPQAAFSVARVTIQPIAAW
WRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCFDFCCQIMNLEDTWLQRRLITSGRF
HHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPFKNFLGKLKPLNVLNILSNCDW
TFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFHLQGPEDLARDLVPVILGGIGLAI
GFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLLKKYFFGGDQTERTLKGIEAAVIDME
VLSSTSVTQLVRDKQAAKAYMNILDNEEEKARKLSAKNADPHVISSTNALISRIAMARSA
LAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWD
GYHGEEVMLWDDYGMTKIQDDCNKLQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAP
GPAPVDFINLGPVCRRVDFLVYCSAPEVEQIRKVSPGDTSALKDCFKPDFSHLKMDLAPQ
GGFDNQGNTPFGKGVMKPTTINRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMA
RDNGLGILSMAGLGKKLRGVTSMEGLKNALKGHKIGMCTIKWQAKVYSLESDGNNVNIRE
EKNVLTQQQQSVCAASIALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFG
TRTAALSLEGPPKEHKCRVHQAKAAGKGPIGHDDMVEKYGLCETEEDEEVVHTEMPSATI
EGKNKGKNKKGRGRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEE
LAEVQAGGDGGIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPK
SAWADDDREVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFG
EPLASIAIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRM
GAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAAT
KSGNTVVCAVQASEGETTLEGGDKGHYAGHEIVKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTP
VPWSYSDACQSLDKTTSSGFPHHKRKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMY
TAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMNS
IEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLLA
PSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFY
GDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLVFLRRTISRDAAG
FQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKISSK
VIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggcgtcgaaagacgtcgttgcgactaatgttgcaagcaacaacaatgctaac
aacactagtgctacatctcgatttttatcgagatttaggggtttgggtggtggcgcgagc
ccccccaaccccataaagatcaaaagcacagaaatggccttgggtttaattggcaagaca
acccaagaggtggcagggaccagtgacctaccacccaaacagcagagagaccgtcccccc
aggacccaggaggaagttcagtatggtttggggtggactgaaaggcccatggaccaaaat
gtcaagtcatgggaggagcttgacaccacaaccaaggaagagatcttggacagtcataaa
gagtggtttgatgccggcggcttaggcccatgcacaatgccctcaacttgtgaacaagcc
aaagatgacagcccacctggtgaacaggtcaaatggtcagtgcgtgatggagttaatctt
ggggtgaatcgcctcacaacggtgagtggtcctgaatggaacctctgtccgctacccccc
attgacctaaggaatatggagccagctagtgaacccaccattggagacatgatagagttt
tatgaaggccatatctatcactactccatatacattgggcagggtaagacagttggtgtg
cattccccacaggcggcattctcagtggctagagtgactatccaacctatagccgcttgg
tggagggtttgttatataccccaacctaaacataggttgagttatgatcaactcaaagaa
ttggaaaatgaaccttggccatatgcagctatcaccaacaattgctttgacttttgctgc
caaattatgaatcttgaggacacatggttacaaaggcggctaatcacatcgggcagattt
catcacccatcccagtcttggtcacagcaaacccctgaatttcagcaggatagcaagctg
gaactagttagggatgctatattggccgcagtgaatggcctagtttcacaacccttcaag
aatttcctaggtaagctcaagccccttaatgtattaaacatcctatctaactgtgactgg
acttttatgggggtggtagagatggttatactgctccttgagctctttggcgtgttctgg
aacccgcccgatgtatccaattttatagcgtcccttcttcctgatttccacctccagggg
cccgaagatctggcccgggatctggttccagttattcttggtggtatagggctagccatt
gggttcaccagagacaaggtcactaaggtcatgaagagtgccgtagatggcctccgggcc
gctacgcagttgggacagtatgggttagaaatattctcactccttaagaagtatttcttt
ggtggagaccagactgaacggaccctcaaaggcattgaagcagcagtaatagacatggag
gtgttgtcctccacatcagtgacacagctggtgagagacaagcaggcagccaaggcttac
atgaacattctggataatgaagaggaaaaagcaagaaagctctctgccaagaatgctgac
cctcatgtaatatcctcaacaaacgccctaatatcgcgtatagctatggcgcggtccgca
ttggccaaggctcaagctgaaatgaccagtcgaatgaggccagtcgtcattatgatgtgt
ggcccccctgggattgggaagactaaagctgcggaacacctggcaaaacgactggccaat
gagatcagacctggtggcaaagtggggctggtgccacgtgaggctgttgaccactgggat
ggctatcatggtgaggaagtgatgctatgggatgattatggtatgacaaaaatacaagat
gactgcaataagctccaggctattgctgattctgccccactcactctgaattgtgatagg
atagaaaataaagggatgcaatttgtgtcagatgcaatagtcatcactaccaatgcccca
gggcccgcccctgtggacttcatcaatcttggccccgtgtgcagacgggttgatttcctg
gtttactgctccgccccagaggtagaacagataaggaaagtcagccctggtgacacatca
gcattaaaggattgcttcaagccagacttctcccatctgaagatggatttggccccacaa
ggagggtttgacaaccagggaaacacaccatttggcaagggcgttatgaagccaacaacc
atcaataggctactcatacaagctgtggctctcaccatggagaggcaggatgagttccgg
ctccaggggaagatgtatgacttcgacgatgatcgagtgtcagcattcaccaccatggca
cgcgacaacgggttgggcatcttgagcatggcgggcttaggcaagaagctgcgcggcgtc
acatcgatggaaggtctgaagaacgccttgaaggggcacaaaattggcatgtgcacaatt
aagtggcaggccaaggtgtattcactagaatcagatggtaacaatgttaacatcagagag
gagaaaaacgttctaacccaacaacaacagtcagtgtgcgctgcttccatcgcactcacc
cgcctgcgggctgcgcgtgcggtggcgtacgcatcatgcatccagtcagcaataacctcc
atactacaaattgctgcctcggctcttgtggtcaacagggctgtgaaaagaatgtttggc
acacgcactgctgctctgtccttagagggcccccccaaggaacacaagtgcagagtccac
caggctaaagccgcagggaaagggcccattggccatgatgatatggttgaaaagtatgga
ctgtgtgagactgaggaggacgaagaagtggtccacactgagatgccatctgccaccata
gaaggcaagaacaaaggaaagaacaagaaggggcgtggccggaagaacaactacaatgcc
ttttcccgtagaggactcaatgatgaagagtacgaagagtacaagaaaatacgggaagag
aagggtggcaactacagcatccaggagtacctagaggataggcaaaggtacgaagaggag
cttgcagaggtccaggcaggtggagacggaggaatcggtgaaaccgaaatggaaatccga
catagagtattctacaagtctaagagcaagaaacaccaccaggaagagcggcgccaactg
gggttagtcacaggttccgacattcgaaaaaggaaaccaatcgattggaccccccctaag
tcagcatgggcagatgatgatcgtgaagtggactacaatgagaggatcaactttgaagcg
ccccccaccttgtggagccgggtcacaaagtttggatctggatggggcttctgggttagc
cccacagtcttcataaccacaacacatgttataccaaccagtgcaaaggaattctttggc
gagccccttgccagtatagccatccacagggccggagaattcaccctcttcaggttttct
aagaagatcaggcccgatctcacgggcatgatccttgaggaaggttgtccagaaggcacg
gtgtgctcagtgctaataaagagggattccggcgagctactaccactagctgtaaggatg
ggcgccatagcatcaatgcgcatacagggtcgccttgtccatgggcagtctggtatgttg
ctcactggggctaatgctaagggcatggaccttgggaccatcccaggggattgtggagct
ccttatgtctacaagagagcaaatgactgggtggtctgtggtgtacacgctgccgctact
aaatcaggcaacacagtagtgtgcgccgtccaagccagtgagggggaaaccacgcttgaa
ggaggtgacaaaggccactatgccggacatgagatagtcaaacatggatgtggaccagcc
ctatcaaccaaaacaaaattctggaaatcatctcctgaaccactgccccctggggtctac
gagcccgcataccttggtggccgggatccaagggtgagtggtggtccttcgctccaacag
gtgttacgggatcagttgaagccatttgctgagccacgggggcgtatgccagaaccaggt
ctcttggaggccgcagttgagactgtgacctcatcactagagcaggttatggacacccca
gtgccgtggagttacagcgatgcgtgccaatccctcgataaaaccaccagttctggtttc
ccccaccataagaggaagaatgatgactggaatggcaccgccttcattagggaactagga
gaacaagcagcgcacgctaacaacatgtatgaacaagccaaaagcatgaagcctatgtac
acggcagcgcttaaggatgaattagtgaagccagaaaaagtgtaccaaaaagtgaaaaag
cgcttgctctggggggcggacctaggaacagtgatccgggctgcacgagcttttggccca
ttttgtgatgccataaagtctcacacaatcaaactacctatcaaagttgggatgaattca
attgaggacgggccactaatctatgcagaacattcaaagtataagtaccactttgatgca
gattatacagcttgggattcgacacaaaacaggcaaattatgacagagtcattctccatc
atgtgccgtttgactgcttctccagaattggcctcagtggtagcgcaagacctgcttgca
ccctcagaaatggacgttggtgactacgtcattagggtgaaggaaggccttccatctggt
tttccatgtacatcacaggtcaatagcataaatcactggttaataaccttatgtgccctc
tctgaagtgactggtctatcaccagatgttattcagtccatgtcatacttttctttctat
ggtgatgatgaaatagtttccactgacatagagtttgacccagcaaagttgacacaagtc
ctcaaagaatacggcctcaaacctacccgacctgataagagcgaaggtccaataattgta
agaaagaatgtggatggcctagtctttttacgccgtaccatttcccgtgatgccgcgggg
ttccaggggcgactagaccgggcatccattgaaaggcagatctattggaccagagggccc
aaccactcagacccttttgaaaccttagtgccccaccagcaaagaaaagtccaattgata
tcactgctgggtgaggcctcattgcatggtgaaaagttctacagaaaaatttctagcaaa
gtcatccaagagatcaagacagggggccttgaaatgtacgtaccagggtggcaagccatg
ttccgctggatgcggttccatgatcttggtctgtggacaggagatcgcaatctcctaccc
gaatttgtaaatgatgatggcgtctaa
DBGET
integrated database retrieval system
