Viruses: 4238976
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Entry
4238976 CDS
T40000
Symbol
L, CACV_sLgp1
Name
(RefSeq) Capsicum chlorosis virus; RNA-dependent RNA polymerase
KO
K26280
Tospoviridae RNA-directed RNA polymerase L [EC:
2.7.7.48
3.1.-.-]
Virus
163325
Capsicum chlorosis virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Bunya_RdRp
Motif
Other DBs
NCBI-GeneID:
4238976
NCBI-ProteinID:
YP_717924
RS:
NC_008302
UniProt:
Q0P0H1
LinkDB
All DBs
Position
NC_008302:complement(248..8881)
Genome browser
AA seq
2877 aa
AA seq
DB search
MNIQTINSFLDTSGEITVYLQRIKDEIMSMSNIVERSYPEGKGVIDSGLNSIMSMNYILD
KIEDMKSRYHQSSSSIDQKEMETEIFLFLDKYKELELMRHDLFGVLAGRKLHFAPKHRSD
VFLKDCLMSYIEFCNTSTSIMNKIPNIDDLKEKLVFQHLTPDNYTIYKETSGERACLMIY
DWKVSVDTMSETKTSENYYTSVWKTFKDITVDGQPFLERHPIFVTIVILNPSGNMSITAT
TSRVIQELRNSPYRTFNDRRKAALAAKLISVNSIGQLIGLGTDCFRRFYAETQAFKNSLL
SKVGEYMNRSSEVFFSHWSYEYRKTNLTNNQTSQDIIDLIDAMPNEKIKKDMIVHFLFGS
YLYFKDTMSDLHLKDRFEGYKAHCEMMKVDPIETEEELKRYLDKNEDTFEELYESHFNKI
KSDVLSKKAKETEIDSIETAFNINAGEYQKEYPGCFTNDLQETKTNFSICWSPMTEELKM
NDLNYNNAIIQSFRTSFIEQPKLIHHKSYGGSKVDLHFSMTLFNLVKTCLMDLSIDTTGH
SKAALEDVVDVKDGSIQVKRTDTSQTWREIGSVKTRNGNEFTLSPLTSSDARKHFFKGLS
LMYIDMGKKKKIDIKNELKSKIQEAKSKKDNDEPETPSGEYDISKADIPYQMSLKSITHN
KKLIRHDNPDVKYFCESMIEAMYVLYGMDERKNKKSKINSVYDEYCSNPASLFTKGNLIE
SEMTIAKNIHEVSKELSIYTYSEDMMQLAKGLMVADRFMKKTDFKILTCANTSMICLAFK
GDGINTGKSGVPYITLHRVEKDIQPYFVSLYTKELVVSFRSGNYFVNIMKPQRLNQVRLL
SLFKAPSKVPILFSQYSLLSTEIKKWLNQPSIDVFTCPENKIQYLQKILFSSVVIGTVTK
LSRMGIFDFMRYAGFLPLSDYSNIKEYIAEKFDPDITNVIDCFFVSGIKTLLLKMEGINL
SNNIKPLTIDQENDMSGGISDLDIVCPITGSTLKTIECLYNNVYLAIYMMPKSLHTHVHN
LTTLLSVPAEWEVKFREKMGFKLDEEIKPKKEMFNDSGPFSIDGVLNIKTLFDYYRKNIS
NVGACRSNIEDKEDFLSAPYKIKTLTSSKKCSKADIIKNTEIVAALKSVFGKHPDDIKGP
NLYILKGVLKCFEEDRESLINFMEIEGLDESKYIHFFSNMMSGSNKVLMKTNQDKFYYKS
HPLTVETFMKVRYGYFKTTTVLKSKKVSEELYDLIKEFNKITEIDLEALEKLGRGLKGNR
VTFIQLLEFILMKSRTNAGNTDFLVSVFEKMQRTKMDREIYLMSMKTKMMLYFIEHTYKH
VAQADPSEAISISGDYKIKNLASLSYDTITNYNTALQKNLECKMAFLSADQSKWSASDLT
YKYILAVIMNPILTTGEINLMCECIMMYVKLKRVCIPTDIFLNLKRGQTEYGSYGTALSV
LTDNLETNTFPVSMNWLQGNLNYLSSVYHSCAMMGYEKSMKRMKDYDFTIRWMVHSDDNA
TSMVVRGNIKELLLNFNCSSLSELLFRSIQSHFKSYCITLNPKKSYASESEVEFISERII
NGAVIPLYCRHLANCSTESSHNSYFDDLMSLSIHITMLLRKGCPNELIPFSYAAIQVQSL
SIYSMLPGEENDITTIVKEIDFPLAKREIPICAGGWMYAPVELLSILGPSSNDQLIYYKI
ILDFFNIKDFSSLKKNVNSLGYIDLRINELFKRLISKRTTIADKKMICMVNLFKTSLMSE
DCDSLSVGMKFQSMITQIIKLPSFVSESSLLKNSSFVDFCKLFPNLKKNTDILNALKPNN
LDERDLGEINESKFLSQIQLEELSRHMSSHPESFLIAPMNDKDYILTNIYTYSSVSKRNQ
MSNQSTEKLALDRILRSKAKTFLDPNSKEMVSYKDNMSLKMKEIMNSSGNDFKIINTISE
LMVRDMNFEMVISLMENTVANASIPKANYNFRWFITEKVPSVIEGSPGLIVMSAVYGMDY
LIDLGLKKLPLTETSISILHDIFGNRKTFDDVKECIQNGGKQYKTEEFQCADVLKRYVLS
INYMIQSQNKLLSINTCFSRKNFPFYSKYNLGKTFITNTLAIWSTIYSRLTNINFYTNLN
FVIDRSSRLIISLQRDMNLEKLIDCCAYVSDRLQSLFPDMTIESIRQILCRLNFNGVDLM
KKMKSEISEVKRAINNIKTSTHVTLSFRPQMIAMSKHAAWLYNFGYINEKEFKFVIDQIR
QSEVHYIKTDEQDVRGYYVSGHTYKIGIKTQYNYGQLAMTNQDVSIHLHSPYEYQREDDG
KIWEVHVKSAYKLLQKLLIDKQSAIRTFLNMRSDLMPNQFCIHESSNKTLLILINDTTKP
ITLERIKFKGSIKYIPSSDFAWNMMSNQSKYKLRTAETGECYTELYKSIESDSLIDTILA
NLKKSLEYGNEMENLIEQSILGIDDGETIDYIKDSVDQIHKLAIEGLETCTTSEEFEDYL
TQVEFQTTVDFHKDLLDQIVESKYRATDRINSAVEKLTQWTNSLSTFKDVCIMLKFAMIN
DSKGIKTYKANGSDFHSLSASEVMTSQGFDLFEILKLIKACEACHTSNSVLNLIAFKNIK
NKTYIPGFKKTKSDTVHFDYEMKLNNEVMNKFYEYKTISLQDIKISDRVKMVLENHGFSV
TGQNLKLAEMNLELNPVEIIDDSSTYDQIARQMRLTKKKSSYLIPANTLLLGELMKFLML
CIKGEEHDIMKLLRSHFAMKPVRENRLLSVQDAVMTCRISGFIQRHFLNDKKEIILLGVS
DSLENFISLATPNYTVQEPFKAEALIKKALLEVYDSGKYKILKKIRNYIVADVEFLTEKC
LYSNITNEEISSMIFNAVSKIDLEISNLKPKKRNKRLELHEVFNKFLGSDSTSLGQE
NT seq
8634 nt
NT seq
+upstream
nt +downstream
nt
atgaacatccaaactataaacagtttcctagatacatcaggggaaattactgtgtatcta
caaaggataaaagatgaaatcatgtcaatgtcgaatattgtggagagaagttaccctgaa
ggtaaaggtgtcattgactctggtttgaattcaataatgtcaatgaattatattttagat
aaaattgaagacatgaagtctagataccaccaaagttcttcatctattgatcaaaaagaa
atggaaacagaaatctttttattcttagataaatataaagaacttgaactgatgagacat
gatctattcggtgtacttgctggaagaaagttgcattttgctcctaaacatagatcagat
gtcttcctgaaagactgtctcatgtcttatatagaattttgcaatacctctacctctatt
atgaataaaatacctaatattgacgacctgaaagaaaaattggtcttccaacacttgaca
cctgataactatacaatctacaaagaaacatcgggtgaaagagcatgtctgatgatatat
gactggaaagtctctgtggatactatgtcagaaactaaaacatctgaaaattattacacg
agtgtgtggaaaacatttaaagacataactgtagatggccagccctttttggaaaggcat
ccaatatttgtcaccatagtcatactcaatcccagtggaaatatgtcaattactgctacg
acgagtagagtgattcaggaactcagaaattcaccctacagaactttcaatgatagaaga
aaagcagctcttgcagcaaagttgatatctgttaactctataggacagcttattggattg
ggaactgattgctttaggcggttttatgcagagactcaagcattcaaaaactctctttta
tcaaaagtgggcgagtacatgaacagatcatcagaagtcttttttagccactggtcatat
gagtacaggaaaacaaatttaacgaacaatcaaactagccaagatataattgatctaatt
gatgctatgccgaatgagaaaataaaaaaagatatgatagtccattttttatttggtagc
tatctatattttaaagatactatgagtgatttacacttaaaagacaggtttgaggggtat
aaagcacactgtgaaatgatgaaggttgaccccattgaaacagaagaagagttaaaaagg
tatttagacaaaaatgaagatacatttgaagaactttatgaaagtcatttcaacaaaata
aaatctgatgttttatctaaaaaagctaaagaaacagaaatagatagcatagaaacggct
ttcaacataaatgcaggagagtaccagaaagagtatccaggttgctttacaaatgatctc
caagagacaaaaacaaatttctctatttgttggtcaccgatgacagaagaactaaaaatg
aatgatctcaactataataatgctataatacaatctttcaggacttcgttcatcgaacag
cccaagctgattcaccataaatcgtatggtggcagcaaagtagatttacatttctccatg
accctttttaacctagtgaaaacttgcttaatggatctaagcattgacaccacagggcat
tcaaaagcagctctagaagatgttgtggacgtcaaagatggtagcattcaagttaaaaga
actgacacctctcaaacatggagagagataggttctgtgaagactagaaatggcaatgaa
tttaccttatcacctttaacttctagtgacgctagaaaacacttctttaaaggcctgagt
ctgatgtatatagatatgggaaagaaaaagaaaatagacataaaaaatgagcttaaaagc
aaaattcaagaggcaaaatctaaaaaggataatgatgaacctgaaactcctagtggggag
tatgatatatcaaaagctgacataccttatcaaatgagtttgaaaagcattacccacaac
aaaaagcttattagacatgacaaccctgacgtcaagtatttttgcgagtctatgatagaa
gctatgtatgtactttatggtatggatgaaaggaaaaataaaaagagtaaaataaactca
gtttatgatgagtactgctctaaccctgcgtcattattcactaaaggtaatttaatagaa
tctgaaatgacaattgctaaaaatatccatgaggtatctaaagagttgtctatatatacc
tatagtgaagatatgatgcagctggctaaaggtttaatggtagcagatcgatttatgaag
aaaactgacttcaagattttgacatgtgctaacacaagtatgatatgcctcgcattcaaa
ggagatggtattaacacaggtaagtcaggagtcccatatataactctgcacagagtagaa
aaagatatacaaccatactttgtttctctctacacaaaagaattggttgtatcttttaga
tcagggaattattttgtcaatataatgaaaccacaaagactaaatcaagtgaggcttctt
agcttgtttaaagcacccagcaaagttcctattttattctcacaatattcattattaagt
acagaaataaaaaagtggttgaaccagccttctatagatgttttcacctgccctgaaaat
aagattcagtatcttcagaaaatcttgttttcttctgtggtcataggcactgtcactaaa
ctcagtagaatgggaatatttgatttcatgagatatgcagggttcttaccactttctgac
tattcaaatatcaaagaatatatagcagagaaatttgatccagacataacaaatgttata
gactgcttttttgtatcaggcataaaaactcttctactgaaaatggagggaatcaacctg
agcaacaacataaaacctttgactatagaccaagaaaatgacatgtcaggtgggatatca
gacttagacatcgtctgcccaataacaggatcaacattgaagactatagaatgtctttac
aataatgtttatctagcaatctatatgatgcctaaatcactccatacccatgtgcataac
cttacaaccctcttaagtgtacctgctgaatgggaagttaagtttagagaaaagatgggt
ttcaagttagatgaagaaattaagcccaagaaagagatgttcaatgattcaggtccattt
tctatagatggtgttctcaacataaaaactctgttcgactattataggaagaacataagc
aatgttggtgcctgcagatcaaatatagaagataaagaagatttcttatcagcaccatac
aaaataaaaacattgacatcttcaaaaaagtgctcaaaagccgacattataaagaataca
gaaatagtagcagctctaaaatcagtatttgggaaacatcctgatgatataaaaggacca
aacttatacatacttaaaggggttttaaaatgttttgaagaagacagagaatctttgatt
aattttatggagattgaaggtttggatgaatcaaaatatattcattttttctctaatatg
atgtcaggcagcaacaaagtcttgatgaaaacaaatcaggacaaattctactacaagagt
catccattgacagtggagacatttatgaaagtaagatatggctacttcaagacaactact
gttctgaaatcaaaaaaggttagtgaggagctatatgatttgatcaaagaattcaacaag
attacagagattgatctggaagctttagaaaagctgggtcgaggattgaaaggtaataga
gtaacatttatacaactacttgaattcattttgatgaagtctaggaccaatgcaggaaat
acagatttccttgtttcagtgtttgaaaagatgcagaggacaaagatggatagagagatt
tatctcatgagcatgaagacaaagatgatgctgtattttattgagcacacatacaaacat
gtagcccaagcagatccttctgaggcaatatcaatatctggagattataagattaaaaac
cttgcatcgctatcatatgatactataacaaattataacacggcactccaaaaaaacctt
gaatgcaaaatggcattcttatcagcagatcaatcaaaatggtcggcatcagatttgaca
tacaagtacatattagctgttataatgaaccctatcttaacaaccggagaaataaacctg
atgtgtgagtgtataatgatgtatgtcaagcttaaaagagtttgcattccaaccgacatc
ttcctcaatctaaaaagaggtcaaacagaatatggctcatacggaactgctttatctgtc
ttaacagacaatttggaaacaaacacattccctgtgtcaatgaattggcttcaagggaac
ttgaattacttatcatctgtatatcactcttgtgccatgatgggctatgaaaagtctatg
aaaagaatgaaagactatgacttcaccataaggtggatggttcattctgatgacaatgca
acatcaatggtggtcagagggaacattaaggaattgttattgaacttcaattgttctagt
ttgtcagaattgcttttcagaagcatacaatcacatttcaagagctattgcataacgctc
aatcccaaaaaaagctatgcttcagaatcagaagttgaatttatatcagaaagaataata
aatggtgctgtcattcctttatattgcaggcatttggccaattgcagtactgaaagctcc
cataatagctattttgatgacttaatgtctctctctatccatattaccatgcttttaaga
aaaggttgtccaaacgaattaatacctttttcttatgcagcaatacaggtccagtcatta
agcatatactcaatgttacctggtgaggagaacgacataactactattgtcaaagagatt
gatttccctttggcaaagagagaaattcctatctgtgctggtggttggatgtatgctcct
gtagagttgctatccatccttggaccttcttcaaatgatcagttgatatattacaagata
atattagacttcttcaatataaaagatttcagtagtctcaagaagaatgttaactctctg
ggctatatagatttgagaataaatgaattattcaaaagattgatttccaaaagaacaact
attgcagataagaaaatgatatgcatggtaaatttgttcaaaacaagtttaatgtcagaa
gattgtgatagtttaagtgtgggaatgaaatttcaatccatgataacgcagattataaag
ttgcctagttttgttagtgagagttctttgttaaaaaactctagctttgtagatttctgc
aaattatttcccaatttgaagaaaaacactgacatactaaatgcattgaaacctaataat
ctagatgaaagagatcttggagaaattaatgaatcaaaattcttgtcccagatccagtta
gaagaattaagcagacatatgtcttcccatcctgaatcttttttaattgctcctatgaat
gataaggactacattttaacaaacatttacacatatagcagtgtaagtaaaaggaatcag
atgtcgaatcaatcaacagaaaaactggctctggacagaatattaagatctaaagctaaa
acatttcttgatcctaactccaaagaaatggtttcatacaaagataacatgtctttgaag
atgaaagagataatgaactcatcaggcaatgactttaagattataaatacaatttcagag
ctcatggtcagggatatgaactttgagatggttatttccttaatggaaaacactgttgct
aatgcttcaattccaaaagccaactacaacttcaggtggtttataacagaaaaagttcct
agtgtaattgaaggctcaccaggattgatcgtgatgtcagctgtttatggtatggattac
ctgattgatctaggtttaaaaaagctccctttgacagaaacatctatctctatactgcat
gacatttttggaaataggaaaacatttgatgatgtcaaggaatgtattcaaaacggtggt
aagcaatacaagacagaagaattccaatgtgctgatgtgctgaaaagatatgttttgagc
atcaactatatgattcagtctcagaacaaacttctttctattaacacctgtttttctaga
aagaatttccctttttactcaaaatacaatctaggcaaaacattcatcaccaatacattg
gctatctggagcactatatatagtagattaactaatataaatttttacactaacttgaat
ttcgttatcgatagaagctcaagacttatcatatcgctacagagagacatgaatttagaa
aagctgattgattgttgtgcttatgtttctgatagattacaaagtctattcccagacatg
accatagaatctattaggcaaatattgtgtagattgaactttaatggggtagatttaatg
aagaagatgaaatcagagatttctgaagttaagagggctataaataatataaaaacatca
acccacgtaaccttatcattcagaccacaaatgattgctatgagcaaacatgcggcatgg
ttatataattttgggtacataaatgagaaagaattcaaatttgttattgaccaaataagg
cagagtgaagtccattatataaagacagatgagcaagatgtcagaggatattatgtttcg
ggacatacttacaaaataggaataaagactcagtataactatggacagttagctatgaca
aatcaagatgtttcaattcatttacattcgccttatgaataccaaagagaagatgatgga
aagatctgggaagttcatgttaaatcagcatacaagttgttgcagaagttgctgatagat
aagcagagtgcaattagaactttcctcaacatgaggtctgatttaatgcccaatcagttc
tgcatccatgagagctcgaacaaaacattgttgatattgattaatgatacaacaaaacct
ataactttagagaggataaaatttaaaggcagcataaagtacataccatcttcagatttt
gcgtggaacatgatgagcaatcaatcaaaatacaaattaagaacagctgaaacgggggaa
tgttacactgaattgtacaaatcgatagaaagtgacagcttaatagacactatactagct
aatttaaagaaaagtctagagtatggtaacgagatggaaaatctaatagagcaatcaatc
ttgggaattgatgatggggaaacaatagattatattaaagattctgtcgatcaaatccac
aaattagccatagaaggtttagaaacatgtacaacttcagaggagtttgaagattatctt
acacaagttgagtttcaaacaactgttgatttccacaaagatctgttagatcagatcgtg
gaaagtaagtacagagcaactgatagaataaatagtgctgtagaaaagttaacacagtgg
acaaatagcttatcaacattcaaagatgtttgtatcatgctaaaatttgcaatgatcaat
gattctaaaggaattaaaacatacaaggcgaatggatctgatttccattctctttcagca
agtgaagtgatgacatcacaaggatttgatttatttgaaattcttaaacttataaaggca
tgtgaagcctgccacactagtaattctgtgctaaatttgattgcttttaagaatataaaa
aacaaaacatatattcccgggtttaaaaagactaaatctgacactgttcattttgattat
gaaatgaaattaaataatgaggtgatgaacaagttttatgagtacaagacaatctctttg
caagacataaaaatttcagacagagtcaaaatggttttagaaaaccatggattcagtgtg
accggtcaaaacctaaaactagctgaaatgaatttagaactgaacccagtggagatcatc
gatgattcttccacttatgatcaaatcgcgagacagatgagactgacaaagaaaaaaagc
tcctatctcattcctgccaatacattgctattaggagaattaatgaagttcttaatgttg
tgcatcaaaggagaagagcatgatataatgaaattattgagaagccactttgcaatgaag
ccagtaagagaaaatagattactaagtgttcaagatgccgtgatgacatgccgaataagt
ggatttatacaaaggcattttcttaatgataaaaaagagataatcttgttaggtgtatct
gacagtttggaaaactttatatctctggcaactccgaattacactgtacaagaaccattt
aaagcagaggctttaataaaaaaagctctgctagaggtatatgattctggaaaatataag
atattaaagaagataaggaattacatagttgctgatgtagaatttcttactgaaaaatgt
ttgtattcaaatataaccaacgaagaaattagcagcatgatattcaatgctgtaagcaaa
attgacttagaaatatctaacctgaaacctaaaaagcgaaataaaagattagaactgcat
gaggttttcaataagtttttaggatcagactctacttctctaggtcaagaataa
DBGET
integrated database retrieval system
