Viruses: 5075767
Help
Entry
5075767 CDS
T40000
Symbol
SLRSV_sRNA1gp1
Name
(RefSeq) Strawberry latent ringspot virus; 250 kDa polyprotein
Virus
28351
Strawberry latent ringspot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
5075767
NCBI-ProteinID:
YP_227367
RS:
NC_006964
UniProt:
Q5G2U4
LinkDB
All DBs
Position
NC_006964:253..6936
Genome browser
AA seq
2227 aa
AA seq
DB search
MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE
RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS
YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP
TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTKGSLDLKLTLQDVDEMTQA
LSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAVER
PISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQPS
GTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLLDI
QRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVLNA
PLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASFVW
DLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIPLA
ILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVEES
PDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFGSG
FIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEKS
EFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDSR
KVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD
VLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPL
PLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRYR
DRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAADQ
IAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQM
ITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLETS
KRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFAA
LGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHLVG
FTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQRIG
LKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEADYT
LLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGLKI
ASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGDEF
FDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLKDR
NLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLNGV
NGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDALS
ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNC
IPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGDEH
RERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMASSS
LFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNP
PEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFHYG
DKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKDAA
SDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRSTV
RNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLLEA
VTAAKGW
NT seq
6684 nt
NT seq
+upstream
nt +downstream
nt
atgggttactcacgaggttcacgtggtggtgctgataagcccaaactgtgtggaatttgt
tttgctagctttcctgatgctcaggagaggaagtgccactacaggaagtataactgccgg
gactctggtggtcaacttggtggccttgttagcacagggcgctgtgcttctgctaaagag
agaaatttgaaagttgaggctgataggaaggaactggagtcctcctgtgatgatttcctg
actgagcaggatatggagatgacatttatgtcagatctctttgagtttactgaagggttc
tctggagatcccataactctttgttttgcccaccatattacttatggtcctggagattct
tatatctcaaggcccatataccaagcacctggcttggatgtagctgactatgccgcattc
cagaatgagaaagttaagggtactcagcgcgagttccttactactgatcgcaagtatgat
gcggaggttctaacttctgtggttagaactgctattgtgggtggtggtttcggatcacca
accttcgattacactggtctcggtggcgatggactcaagtaccgatttgattctgacgat
ctctggtcagaccattctaagggccttggtaggtttgtttctgcgggcttcactgaatcg
actaagggatcattggatttaaagttaacattgcaggacgttgatgaaatgacccaagct
ctttctgatgagtgggctgaatgggtttattttgaagaggatctcgaggaatatttggag
gagtatctcaactctaaaattgccctcgctcaagagattcgtgctctaaagcagaaaaga
actgttgccctagctcagaaagcttatgaccaagctaaggaaaagcctgctgttgagaga
cccatctccccagatactgttcttcaatctgccaattcctatctgtctggtaccaaatgg
tgctacgattctgaggatgaggactatctcccagtagctcctcttgataagttccacaat
aagaaacatgatattgattttgtggattgttgtgacacagagtatcaaattcagccttca
ggcacaatctacacagagacttggttcattgatggctgtctccccggatgttggtttaaa
agaggagttgctatcgatgaggcagttgtttgtgagaaactccccttaattgggaaaact
cctctggagcttatgattcagtatcaggtggagccaacaggtgatcttctcttggacatt
caacgtgcattgtttgcatactatgagaaagaagcacttccaaataagaagtatttcaac
ttgaatggtgtgccaactatgattgttttggaggattggcgttgtgatctaagatactgt
ctatacgcaccattcatccaaggagatcaacttaagcacttgatggtggttttaaacgct
ccattaccaggttggttagttgatttcccaaagaggaggaaatctggggttttgcaagcg
agtggttggaatccactgcgctatttctcgaagcaggcaactcttggcttcctcgatgga
gtgatgactaagctgaaggaacttattggtcctataattaatgctgcctcatttgtctgg
gatttaatcattaaggccaaagattgggcttttaaagcacttgaagatatgattgagaag
cgtggtgaaatattaaaggctcttctccagcccctattgtatgtgtgtggtctccttctt
ttcctgggttctctgaagggcttgaagactattgttgagtcatttggtattccacttgcc
attttgacgggcgctgcaatcggccttggtgtgtatgttcttgttacattcttggggcag
gctcatatgggtgccctcaagaggtcaaccaagatttgggaccttgttcagaattgggat
aaaccttctgaagttaaatgcattgatgagcaaatcattgaggttttggtggaggaaagt
cctgacaaagaggagtgggttcgagagttactagcttcaccgcattatgttcctgaatgt
gttattgatcttactcatatgaaggatttactctccccacagaagtgcgctaatttcaag
caagcctttgaggtgggtgcaagtgaggcctcttctcctggaatgctctttggatctggc
tttatttggaagatcttgctcctcttgtgtcccctttccatgtttggagtttcaaaaact
ctatcatgtgcgaaggatctgattactattcaagggggccaagatgctgctggacgcttt
ttccaggatattgttggtggcacccaggaggtcttctacacaatcactggtgagaagagt
gagtttctggattatatttatgccacagttggtgtggatttccaggcttggcgtgctgag
gttctggagctaacaacagcgactcctacctcaatcttcctgggtcctcaagagcgtctt
aagagactccgtgcttgcaaggataaggctgatcggctcatccttcagatggactcgcga
aaggttcctggggcttatataacacatttcaatagccttctgcaatccttggatagagct
ttagtggaatgccaacaagctctttccgttggtaaatggaggaagacgcctgcttgcatt
tggctttatggtgattctcatgttgggaaatctgtttgctcacagtacttgattgatgat
gttctagattctcttgattatgcacagactggtagggttttttcccgtaatggtagtgac
tctttctggtcctgttacaagaatcagagtgctgttttgtacgatgattttggagctgtc
tctgagggtggtcattttgatgaagcggagattataagactgatagcccctgctccctta
cccctgaatatgccaaatttggaagcaaaggggaatacctgctgtacatcagattttgtg
ttcattacagccaatcaagctggtttaactccgtctgctgttattcattgtaaaaaagca
tttgagaacaggcgattgatcttggccgaggttacagcagtagaaggtggccgctatcgt
gacagatacagattcacgattcaccagaagaatgagccatatgctagagatgaccgtttc
caggtgatgaattatgaccaattcatgcagtatgtggtaaatcaatcaaaggaccacttc
tcagagcaagttgatctgcgtgatgctcctcatacacaaatatttgctgcagctgaccag
attgctgctgaagctgaggagggtttcaagacggctggtataactattcccttctgtatg
cttaaatgtatcgaggggagaatggtgacgtactatgatgaagagaaattcactgaaatg
acagtagaattatccgaaactgatgcagatatcatccactcgcgccttgatccacaaatg
ataacgcagaggcttcagatgcttctacccaaggctgcctatgtcaatttgaagaatcac
tttggtcttggaacagatccgtttgagcagcccaatccttactttaactgttcgcaacgg
gcaaaggttattggacgatttttgaagcctaaggtcacggaggcccaactcgaaaccagc
aagcgtggttttcttcaggtgactaaggagctagcacaaggagcttgtagagctatatct
gatgccccctttctggtaaaacttttactgggatttggtgctttgtactttgtgggtctc
ccaattttgggttggttaaagagcttgtactctgctccttccttgatgacatttgcagca
ttgggaactatgagagcctcgggttcgttatcgagttcacaggatcaggaaacaaggcga
acagcctctgggcgtgagagaagacgttacctgttagaggcttcaggtccgggagctctg
gaagccaagccccaagatgttgaaactgagctggcatcactgtccaagcatttggtcggt
ttcaccagtatcgactttcctgatcatcattatcgaggaatagcccttggtggtactagg
gttttaatggtctatcatgtttggctggaactacatagtggttgttacaaagtgggttct
ctctcgaaaacctttcctttcaccgttaatcgaaagaactgcaaattccagcggatagga
ttgaaggatttggttattgttgactttcctcctacttttgtgtcctttccagttctcaag
ctggaaaaatggttgcttgcctctcatgatccgttcatggcaggttccgggtggtttatg
gaaatggttttccaacggaatggagtcttggaagtagctcgagaagaggcggactatact
ctcctcgatacacatgatgtttacgatgccgcctttcttaagggggttgggctcaacaag
tgtgtgaggtacactatctgtgatgatgccggtactggctatcggaatgattttttctat
gtttcacagtgtggcacaccccttgttgctaactatggtaaaggaaagggcctaaagata
gcttctatccatgtggttcaccacttctcagctactgagaaggatactattatagctggc
tctggtagcttgctcacaaaagaggaatatctcgaggctagtttgctgctcggggatatt
aaacaccctcttgagactgaccgtattcaggcatcgggttgcttatctggggatgaattt
tttgatgctgagacagttttccctgaaggactcctacttccttcccaagcccctcgccag
gccacaagtagtgagattcataagagctccatttcggatggtttggaaaagctggttgga
gagaagaggaaaacagagcctgccatcatcagcaatcgggatactcgccttaaagatcgc
aatctggatatcttcaagaagggcatgatgaagtacaaagctgttgctgcagacatgagc
ccagttacagatgaagaggagaaaatttggaatgtgacttgggatagtatctttgacctt
cctggtggcatccagagtaagtgtcatttactctcggaagatgagaatctcaatggagtg
aacggagataatgagtaccgtgggatggttgtctcaaccagtgaaggctggccagaagtt
ttgaacaggaaaaatggtgaggcaggaaaggaaagatttcttcttggcctgcctggatgc
tacacgttgaatcgtaatcttcctatgtaccaaaggatattggatttggatgctctgagt
gcaaccacaataccctgtattgttggattggatactgccaaagatgagagactcccactt
tccaagatataccaagatgttaaaactcgcctctttaccattctcccgatggagtataat
tacttggtgcgaaagtattttggttcctttgttgcagagctaatgaagttacacaattgc
ataccaacaaaagtgggaatcaaccctcttggttatgactggacaatccttggaaagaag
atgcatgccaaaggaaccaactggttcaatggggattattcccggtttgatggtgtcaca
ccacggtgccttctgattgaaatttccaatagaatcacaaaactttacggtgatgagcat
cgggaaagaaggctccatttgatgttggcagcaacaacgaggcttggtgtggcgggtatt
ggtctttatcgggtctcagggggcattccacccggtttcgcccttacggttatagttaat
tcattggtcaaccactttttggttagatggagttgggagcacatgatggctagttcctcc
cttttcttcacagattgtgttgagctcgctgtggttggggatgacaatttagttagtgtg
aaacaggttgccgctgaggatttcaacttgaagaaattatctgcatttctggcaggtttt
ggtttcaccctgaaggatggttctgataagaataaggaaatcctacctgagtttaaccca
ccggagaagtgtgatttcctgaaacgatgtttcaaagctcgaggagatcgttatctggca
cctctttcatggctctctctctctgagtcattacactgggttcgtgagacaaatatgaca
aatgctgctgcaacccagaataatgtagagggattcctgagagaacttttccactatggt
gataaagagctgtattgcaagtggaggagagatcttatctctttatgtgctgagaataga
gttccccatccaactagctactcttttgaagagttggagcgttcctggttatccgggaaa
actgtggcttctatctttgaaaaggaggagccagagattgtggttctgaaagatgctgct
tcggatgttgccccgaatgtacatattgttccagctcagacatgcctcaagtggaaaccc
aatgaggtgccaactgtggtttggtgtggtcctaactgtccgaatcagcttaggaatgcc
aatggttgcttccttattcaggcaccacagggctctcgttatcctctccgaagcacagta
agaaattcactgaagagggtacatcagcgttccgatgaggtttattttgctggggcttta
gaccaatctttagttcattgggttgccgccttttatgcctctatgtatcgtgagtccttt
agtcactcaaagtacatggcagcatattttggggataatgataaaggacttctggaggca
gtcactgcagctaagggttggtga
DBGET
integrated database retrieval system
