Viruses: 5076642
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Entry
5076642 CDS
T40000
Symbol
RpMV_gp01
Name
(RefSeq) Raspberry leaf mottle virus; polyprotein 1a
Virus
326941
Raspberry leaf mottle virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Zemlya
Viral_helicase1
Vmethyltransf
Peptidase_C42
AAA_30
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
5076642
NCBI-ProteinID:
YP_874184
RS:
NC_008585
UniProt:
A0MBW3
LinkDB
All DBs
Position
NC_008585:340..8799
Genome browser
AA seq
2819 aa
AA seq
DB search
MSPPFGELLVEVATDPETLRYLEAVHAAEAKAKLPTNLCRDIVLSLPVPIRERRPRPLPH
VFCVNSAGVCSPLNERFLSSSRRRIVKRPSVPSESPTGVLPASSASFRNALREAGVSVPS
FFFSFSPPASAGQLVLVRALKSPKQNNRKLTLLITNYGLLLVRGDGASFSRTRRSRPITA
VGPCFSTTVYISGKWRRARVRGDAKISPAARPGVISHLSPIPSVRKSKTKGSPFTPRTAA
YHACPSVEVRTAFNDTVSNRTPAVRATTPGARSVAPYVFSFPPDTTSAGLLKQRPEGCRF
LPNAHTEGDLMYHALRYLRLYRPGGSKFSIGFYNRYCFVHFRESSTGSVFVILQRPSSAV
QFKFSCEAYDLHRRFLITGVLSPRLLFLTGYQEPVNGFCHLGASLFVALSLGVAAKYRPF
INLGRFPTFATVKARCELVYGPEAALVKGLPGNLRHGVFHVDLLSPLRAVFSDALVGGFI
GYAPPISWFPKGVEFEKFKKDIPFDLSGKDNTFYLRADDLPTALKYVTSRMNRFRIGREA
VYSRFLHSSVEFLLRPAPGHCVYFYVRVNTTWAGFKFTCSSYSAALSQQFTGVLPPYHSK
MPSGYCYLDILDRTAVKRGYLHNADHTVRHLGRFPTATKFRWFLQNFLPIRPTRVLASVT
VSRNNIVHIHTNGDGRRIVDLFSLDRSYRIGGSDDGALALNDADRMKVISSVFATLSANR
DSLLTKSLEQDLITFKSEIHDLASSKPQQRVPFSLNEADQIQLINAYPEFKLVFTNSVHS
DHAIAAGSRSLENALLHKFADSQRRVLRHHAYKRLKTDSATPSSILSATSSLSACSNPID
VCTHKSKVMTLVQVYDIPLPVLCESMILRDTEIAYLTMITPGEIVDKRLAFLVPQLNCEV
EIKPQEDLLLYKFSSSTFSHSLSVVLSYMNTPCYVSGGYFFSVEMFSARCGVNYYVVTKS
DVCPKNSFTRRLRFKRCDPDVTRVKIPRYNVKTKTCLPGCDYLYLDSKFVSKVFEHVVNT
CTVVNAKTFEWTWTYIKSSKSRVVISGKVVHRDVPIDIKYLDGFAAVMLAAGVKSRQGAE
FFSRRLALYTGDASYYQMLEFAIGEKFRSVMQDFDKYLATKIKKMLKDAFSLEFLDVDEP
LDTIGEYAELDVDVKLSAVGSIPEHEEEDKIVAAVKDAIVRDIAVSAVEAQAPVRPKSEP
YVPPSKRERPGLFAAGSSSAFSNFLQSPFTNVSDFFIRWAAAVAEGSSKAATLFVAFVRG
ILAKFSEFLKVPRVFTSLWALFSKVWGVLVSTKDSMKAAVVSLLDLCSGLVSVFSSSVGA
CRDFVSSILGFVGSFVKGIRREVVKLFSNLYDFCLQSEDSFAPALECTVSLGIAIVTHLG
VYLSGSSSGYVFFAKVSAQLVLEYCANLFALTHFGKPELYSVEFFRRGVASLLAAVSTRG
VLLDTMGVLTLSTVMPMLLRKVLAFPFVNYSPHAAYVLYAASDFPVYSYLSCAVASGVLS
LDSVVSLVTASINEAFDGIVTSKMKGCKTALKECTVSRVVARFCNGLTTPFSATSAKFRD
LASGVPSFNVTSIRKSVRDRTARHFARILSQPAISDEAPLELVDFPATEEILEDSLFESA
PSSFSGEDDRVSLLSRIRSFPFFSRGSSKKPGLFAGSKSSRVLEFLYHFFSTLREIPLSL
QSLWYFLVGRVKSVFSDCGGLMSSILCCINSGIDSVLLCSLPDVSCLFSDSPNLRGGLRG
GNAGDFWFRYSVLQDFALRYIFNSHTLSYVTNCFTFIIDRAPSFLLSGRDVVLRVISCIF
PHISGAFNHSLYGVLPGLRGGSSLSLSRVLCTIFPVVGITIADVFFTALTYSFHDAIVYF
ICGVGYLSGGIFSAFTLCHLLRFLFRTDWTPLSKVANSLEDRCRSFLSFPPRSHSSSPDC
QTDEERALRDLLVSIADLYTPSRDAARARLPDSEHDSDSEILSDFDCFDVPTVDGSVTLC
DPLPRPEDFSDLEDDVSPGLRAGGPVLSLTTFLLTRLSRFISLLIRKVPFLSIFRVLNLR
FWGSRTADRLLSVYSAFYNPFQFISSVFVWAFRNPGLAFTNTLSTLRFVHAPTPVVDAFQ
RNGLPFLFDDRVVAFSRLCRWLAGDDIPRVCNRRCYFPVATSFDLSPVSEARSVNFVDSV
ESVLDLRSSVGLPRREVIDDSDSDTTSESSTEPLADEPVVKASKGKAVLEEILEPVGQPA
EASTSEKSVLMGIAESHRQETLSNVSSSVLPGPVVPSRRPRSPAKDNVVKICGYLQLLNS
AQSVPTGYDRDSSMSNFSAMTNSIREFYYSQEVTLYELYSKLFDYWREFVVLKHVREVCS
LHQDEDCIVVDFIRGEMVYKTGRKSLKGRIDAYSFGFCSDGLIPVELMKGKYDYCLVHTQ
TTFIAANHFLNSAPSRAIKFTNESVKIRVYEAPPGGGKTYALVESFCNMVPKRSVVVVTA
NKNSQIEISKRVKNLLVANNWKYHDAAAIVKESVFTVDSYLMHHAYTKSHVVLIDECFMV
HAGAVCAVLTFTGASLAVLYGDSRQIHYIHRNDLGLSLLHDINNFLSDDSRVYGNVSYRC
PWDVCAWLSEIYPTRIQSMNEKSAGTSSMSVTEISCVEDVPLDQKFKYITYTQGEKRDLS
KHLAVRATASNCKKVPEVNTVHEVQGDTFAHVCLVRFKYQDDSPFSSQNHIIVALSRHTD
SLVYHVLSTRRYDDTSSAIAKSKLIVAKFKQYPGGECSSTLSWSKGPYPDKPGECKAASS
PYQCITQFLEDAVPGSTVVDFGDTSLEMSEQPFESGADNVTIKETTSRDSGSVQDPRRV
NT seq
8460 nt
NT seq
+upstream
nt +downstream
nt
atgtccccccctttcggggaacttctcgtggaggtcgctaccgaccccgaaaccctccgt
tacttggaggcagtccacgcagctgaagcgaaggctaaactaccgaccaacctttgccgt
gatatcgttctttctctccccgtccccatccgtgagcggcgcccgcggccgttgcctcac
gtattttgtgtgaactcagctggagtttgcagtccccttaacgagcgttttctgagctcg
tctcgtaggcgtattgttaaacgcccctccgttccttcggagtcccctactggagttctt
ccagcttcctctgcttctttccgcaacgctttgcgtgaagcgggtgtcagcgtcccctcc
tttttcttttctttttccccaccagcttctgctggtcagttagtgttagttagggcccta
aagtccccaaaacaaaacaatcgcaaactaacgctcctaatcaccaactacggtcttttg
ctagtccgaggtgatggcgctagtttttcccgcacccgccgcagccgacccattactgct
gtgggtccgtgtttttccaccacggtatatattagtggaaagtggcgtcgcgctcgggtg
cgcggcgacgctaaaatctctcccgcggctcgaccgggagtgatttctcacctctctccg
attccctctgttcggaagagtaagaccaaggggtctccctttaccccccgtacagctgcg
tatcacgcatgcccctccgttgaagtgcgtactgccttcaacgataccgtttccaatcgc
actcccgctgttcgggcgaccacaccgggagcgcggtcggtcgcgccttacgttttctcg
tttcctcccgacaccacttccgctggtctcttgaaacagcgtcctgaaggctgccgtttc
ctccccaacgcccacactgagggagatctcatgtatcacgctttgcgttacttgagattg
taccgccctggcggtagcaagttttctatcggtttttacaaccgatattgttttgttcac
tttcgcgaatcctctaccggttccgtgtttgtgatcttgcagcgaccctcttcggccgtg
cagtttaaattctcctgtgaagcgtatgatcttcaccggagatttctcatcactggggtt
ctttccccccgcctgctctttctaaccggctatcaggagccggtaaacgggttctgccat
ttgggcgcttccctcttcgtcgccctctctttgggcgttgctgctaaataccggccgttt
attaatctcggccgctttcccactttcgctaccgtgaaggcacggtgcgaattagtttac
ggccctgaggccgctttggtgaaaggtctccccggcaatctacgccacggggtctttcat
gttgacctcctctcccctcttcgggccgtcttttcggacgccctcgttgggggtttcatt
ggttatgcccctcccatctcctggtttccgaaaggcgtggagtttgaaaaatttaagaaa
gatattcctttcgatttgtccggtaaagacaacactttctacttgcgcgctgatgattta
cctactgctctcaaatacgtcacttcgcggatgaataggtttcgtattgggcgcgaggcg
gtgtacagccggtttctccactcttctgtggaatttcttctccgacccgcacccggtcac
tgcgtgtacttttatgttcgcgtgaacaccacttgggcgggttttaaatttacttgttcc
agttatagtgccgcattatctcagcagtttacaggcgttttacctccttaccactctaag
atgccttccggttactgctatctagatatcctcgaccgaactgcggttaagaggggttac
ctccataatgccgatcataccgtgcgacatttgggacgttttccaaccgccaccaagttc
cggtggtttctccagaatttccttcccataaggcccactcgtgtgttggcctcagtgacc
gtatccagaaacaatatcgtccatatccacactaacggcgatgggcgacgaattgtagat
ttgttttctctagaccgtagttatcgcattggaggttctgatgacggcgctttagctctc
aacgatgctgataggatgaaggtgatatcctctgtttttgccaccttgtcggccaaccga
gattctctcctcactaaatctttggagcaggatctcatcacttttaagagtgagatacat
gatctcgcttcatctaaaccgcagcaaagagttcctttcagtttgaacgaagctgaccaa
attcaattgatcaatgcttatcccgagttcaaattggtttttaccaattcagttcattct
gatcatgccatagcggctggttctcgttctctagagaatgctcttctacacaagttcgca
gattcccagcgtagagtgttgcgtcaccacgcctacaagagacttaaaaccgattccgcc
actccgtctagtattctctcggccacttcgtctctttccgcctgcagcaaccccatagac
gtctgcactcacaagagcaaggttatgactcttgttcaagtgtatgatatccctcttccg
gttctgtgtgaatctatgatacttagggataccgaaatcgcttacctcacaatgatcact
cccggggagatagtcgataagaggttagcttttctcgtgcctcaattgaattgtgaggtc
gaaatcaaaccacaagaggacctcttactgtacaagtttagttcttccactttttctcac
agtttgagtgtggttctctcttacatgaacacaccttgttatgtcagtggtggttacttc
ttctccgttgaaatgttttccgcgcgttgtggagttaactattacgtcgtaaccaaatct
gacgtttgcccgaaaaactctttcactcgtcggttgcgttttaagaggtgcgatcctgac
gtcactcgtgttaagattccccggtacaacgtaaaaaccaagacttgccttcccgggtgt
gactacctgtatttagactctaagttcgtttccaaggtttttgagcacgtcgtaaacacg
tgcaccgttgtcaacgctaagacttttgaatggacctggacgtatataaagtcctctaag
tctagagttgtcatcagcgggaaagtggttcaccgcgacgtccctatagacattaaatac
ctagacgggtttgccgctgtgatgcttgccgccggagttaaaagtcgccaaggagcggag
ttcttttctcgtagactcgctctgtatactggtgacgcctcctattatcaaatgcttgaa
ttcgctataggggagaaatttcgcagtgtgatgcaggattttgacaaatacctggccacc
aagattaagaaaatgctcaaggacgctttttctttggagtttcttgatgtcgacgaacct
ttggataccataggtgagtacgctgaattagatgtcgatgtcaagctgtctgccgttggt
tctatccctgagcacgaggaggaagacaaaatcgttgctgccgtcaaagacgcaatagtg
cgtgatattgctgtttccgctgtggaagcgcaggccccagttaggcctaagtcagagccc
tacgttcctccttcaaagagagagagacctggtctttttgcggcgggctcatcatccgct
ttctctaatttccttcagagtcctttcaccaacgttagcgatttcttcattcgttgggca
gcggcggtagccgagggtagcagtaaggccgccactcttttcgtagcttttgtgagagga
atcctcgctaagttctctgagtttctcaaagttccccgtgtttttacctctttgtgggct
ctattctctaaggtttggggagttctcgttagtaccaaggattcgatgaaggctgctgtc
gtttctcttctcgatctctgctctgggctcgtctcagttttctcctcttccgtcggagcg
tgccgtgatttcgtctcttcaatcttaggcttcgttgggagctttgtgaaaggaatccgt
cgagaggttgttaaactctttagtaatttatatgatttctgtttgcagagcgaagattcc
ttcgctcctgccttagagtgcaccgtttcgctcgggatagctattgtgacccacttaggt
gtgtacttatccgggtctagcagtgggtacgtgttcttcgccaaagtttccgctcagctc
gttctcgagtattgcgcgaacttgttcgctctgacccacttcggtaaacccgagctatac
tccgtcgaattcttccgtaggggagttgcttctctcctagctgccgtatctactcgggga
gttcttctcgatacgatgggcgttctgactctctccactgtcatgcccatgcttctaagg
aaggtgctcgctttccctttcgttaactattctccgcatgccgcttatgttttgtacgca
gcttccgactttcctgtctactcgtatctaagttgtgctgtcgctagcggcgtcttgagc
ttagactccgtggtctctcttgtgaccgcttccattaatgaggctttcgacggtatcgtg
acttccaaaatgaagggctgtaagactgcactcaaagagtgcactgtgagtagagtggtg
gctaggttctgtaacgggctcaccacccctttttctgccaccagtgctaaatttcgcgat
cttgcctcaggtgttccctcttttaacgtcacttccattcgcaagtctgttagagatagg
accgccaggcacttcgctcggatactttcacaaccggcaatttccgatgaagctccacta
gagcttgtcgactttccggcgactgaagaaatcctagaagattcgctcttcgagtcagct
cctagtagttttagtggcgaggatgatcgtgtctcccttctatctcgtattaggtcgttc
ccctttttctcaaggggttcttcgaagaaacccggccttttcgccggctctaagagttcc
cgtgttttagagtttctttatcatttctttagcactttgagagagattcccttgtctctc
cagtctttgtggtattttctcgtcggtcgggtcaaatctgttttctccgactgtggcggc
ttgatgtctagcatcctttgttgcattaattcgggaattgattcggtcctgttgtgctcg
ctaccggatgtttcctgtctcttttccgactctcccaatttgcgtgggggtttgcgggga
ggtaatgctggggatttttggttccgttattctgttcttcaggactttgctcttaggtac
atttttaactcccacaccctttcttatgtgactaactgcttcacttttataatcgacagg
gccccttcatttctccttagcggtagggatgttgttttgcgcgttatctcgtgtattttt
ccccacatctcaggggcttttaatcattccctttatggagttcttcccggccttcgcgga
ggctcgagtctttccttatctagagttctatgcactatatttcccgtagtcggtatcacc
atcgctgatgtgtttttcactgctttgacttattcgtttcacgacgctatagtttacttc
atatgcggtgtcggttaccttagtggtggtatcttttccgccttcactctatgccactta
cttcgctttctcttccgaactgactggacccctttaagcaaggttgccaactctttagag
gatcgttgtcgcagttttctaagtttccctccccgctctcattcttcttcccctgactgt
cagacggatgaagaacgcgctctcagggatttgctagtgtcgatagccgacttatacaca
ccttcccgtgacgctgctcgcgctcgtttgcccgacagtgaacatgattccgattctgaa
attctttcagacttcgactgcttcgacgttcctactgtggacgggagtgtaaccttgtgc
gatcctcttcccaggcccgaagatttttccgatttagaggatgatgtttctccgggttta
cgcgcaggcgggccggttttgagtcttaccacttttcttttgactcgcttaagccggttt
atctctctcttaatacggaaggtcccctttttgtcgatttttcgtgttcttaacctccgt
ttttgggggtctcgtacggctgatcgacttttgagcgtgtactccgccttttataatccg
ttccaatttatttcctccgtcttcgtgtgggctttccgaaaccccggtctggcgtttacc
aatacgctcagcactctccgctttgtccacgcccctactccggtggttgacgcttttcag
cgaaatggattacccttcctatttgacgatagggttgttgctttttctcgcttgtgcagg
tggttggcgggtgacgatattcctcgtgtgtgtaatcgcaggtgttacttccctgttgcc
acttctttcgatctttctcctgtttctgaggcgcgctccgtgaacttcgtcgattcagtg
gaaagtgttctcgatctcaggagtagcgtcggcctccctcggcgcgaggttattgatgac
tcagattctgacaccacatctgaaagttctactgaaccgctggcggatgaaccagttgtt
aaagcttcgaaaggtaaagccgttctagaggagattctcgagcccgtcggacaacccgcc
gaagcttctacttcggagaaatccgttttgatgggtatagccgagtctcatcgtcaagaa
actctttcaaatgtttcttcttcggtcttaccgggtcccgtcgttccctcccggagacct
cgctctcctgcaaaggacaacgttgtgaaaatttgtgggtatttacaacttctcaattca
gctcagtcagtgcccactggttatgatcgtgactcctcaatgtcaaatttttcggctatg
actaatagtattcgtgagttttactactctcaagaagtcactttgtacgaactttacagc
aagctattcgactactggcgtgagttcgttgtcctcaaacatgtgcgtgaagtgtgttct
cttcaccaagatgaagattgcattgtagtcgatttcattagaggggaaatggtttataag
accggcaggaagtctctcaaaggtcgtatcgacgcctattctttcggtttttgttccgat
ggtctgattcctgtggagctaatgaaagggaagtacgattactgcttggtgcacactcaa
accacattcatagctgcgaatcatttccttaattctgcccccagccgagccattaagttc
actaatgaaagcgtaaagataagagtctacgaggcccctcccggtggtggtaaaacctac
gctttagtggaatcgttctgtaacatggttcccaaacgttcagtggttgttgttactgct
aacaagaactctcagattgagatctcaaaaagagtcaaaaatcttctcgttgccaacaat
tggaagtatcatgatgccgctgccatcgtcaaggagagtgtcttcaccgtagattcctac
ctcatgcatcacgcatataccaagagtcatgtcgtcctgatagatgagtgttttatggtc
catgcaggagctgtgtgcgcggttcttactttcactggggcttccttagcggtgttatat
ggtgacagtcgtcaaattcactatattcatcgcaacgatctgggtttgtcgcttcttcat
gatataaataatttcttaagtgacgattcaagagtttatggcaatgtctcttaccgttgc
ccctgggatgtctgtgcttggttgtccgaaatctacccaactcggattcagtcgatgaat
gagaagtcagcgggcacttcatctatgagcgttactgaaatatcgtgcgtagaggatgtc
cctttagatcagaagtttaagtatataacttacactcagggggagaaacgggacttgagt
aaacacttggcggttagagccaccgcttccaattgcaagaaggttccggaagtcaacacc
gtacacgaggttcaaggagacacctttgcacatgtttgtcttgtccgttttaaatatcaa
gatgattcccctttttcttctcagaatcatatcattgttgctctctccaggcacactgat
tcgctagtctatcatgtgttgagtaccaggaggtatgatgataccagttcggctatagct
aaaagcaagctgatcgtcgctaagtttaaacagtaccctggtggtgagtgttcctctact
ttatcctggagtaaaggaccttatccggataaacccggtgagtgtaaagccgcctcctct
ccttatcagtgtatcactcaatttttggaagacgccgttcccggctctaccgttgtggat
ttcggggatacctcccttgagatgtctgagcaacctttcgaatctggggctgataatgtg
acgatcaaagagaccacttcgcgcgactccggtagcgtgcaagatccacggcgcgtttag
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