Viruses: 5076754
Help
Entry
5076754 CDS
T40000
Symbol
BRNV_sRNA1gp1
Name
(RefSeq) Black raspberry necrosis virus; polyprotein
Virus
367301
Black raspberry necrosis virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
2OG-FeII_Oxy_2
RdRP_4
Peptidase_C3
Motif
Other DBs
NCBI-GeneID:
5076754
NCBI-ProteinID:
YP_654555
RS:
NC_008182
UniProt:
Q1G659
LinkDB
All DBs
Position
NC_008182:147..6638
Genome browser
AA seq
2163 aa
AA seq
DB search
MSYLTKDLAAFISAATEAGYSFDNACELYQRFKIVELNANPVSRAFCHTYKEWVDEQFTI
PTPEDIDILTVDTVDSSNPAVPDHSTSEDVDTIHCDSCDDAEGPPSPISVLRSPLEGFDV
DIGEANKSLGIDVSAYPCLPKGKENCDLKNIMAGHLFNSPIFPISAIKQEILAEKDLNRL
ASLFDVVNTVTHSVGLEQEGFSLSSLTGAIKSRISGATGLAASMVDIVANLSSASSLLEK
IFQRIITAFDYIASSIGTFGTFLTGIKEKIIEKCTTLWEKLAEWGDHFYYIIPTFCAVFL
VSITCFLINKFLAAVAPTYCFSMSVIVHLIVVCCALVGCEELGAALLSLTKAGKLNFLNM
IYSTFGAEAGEANITVDDKQPSTYHGVDGVFDDVPLNEGASSMTGFFGVLGLLTFFTPKE
LKFDLYEMTKWAHGLKGLADGYEKFKVVAEKLAFWAYEKVGLAATWDAPAIQSMILVTGI
RFQDWCKEVDTLAVEMQGSASLQEDLSRARKLKEQGIKIQDYMVRGDSSISFMMRERLKA
TMGVINDIVSKFEKAIDIGGTRMCPFTVLFFGAPGVGKSNTMGPFMHEIMDRNGESKIGR
VYPRNSGDEHWSHYMRQTALVYDEFAQRTPTPGKSDELELIPLVSCNHYPLVGAAIADKG
LSFNSKYIFMCSNRADVSAGAGLADPDAFRRRRHVCVEVFKDDTLPFKPDEPYYNQTFQL
KNPLRPRDPLTFVDAAGHNQPYQRMTYGELCLYVAEKSAEHFDKEAKSLRFMRKTQGLPE
GDEFVQEGPFSGFDGSLPISAKAISELSMPHFHQADETHQIHGCTDHKVFCCSLYGTKCN
VEHTAAEISYVKMVQDDIHPYSYTTNLAISLAHSDRTLWDVKGFRKMVKRIKGYGIDDVP
EPIDAQTRTFVESAWKGFSDRDRYLIFKYYEINDSFKQKALAKVDIIKEEIKSWSVAGCW
KAMPMGVKWMIGVIALFSFGCVLVDFLHTLMSMRSWSPVDILGNVLGATGAFGVLAFTSE
GGSYAGSGVNIEATKYRDKKIKPYSQNGGPGGANFTYNELESIEAIKKGQYLLSYSNTCG
MSGVAAVFMYKDHSFLISTHEADWINFNKTCFMIGRDGTSREVSLAASGVKKVTRDGFIE
PVCSIDILPTTPVGKASSQSVWYDFHKTNEGRKVGVIVPNNRKDMAQECTKVHFRRNKEV
TDCYNFPGSSKGWKASDLLHAKAPHGNGMCGRLLLAHCPAGNLMVVGLHVSGGGLNERAT
SIFGGIDGSYKDVEDGKFYQQGDLDVHMKELIEAERVTDMVDKIGRVDSSQQFRPSQGTS
IIKSEIHDDLWRRAETCPTVLTRSDPRPEVPFDPYQAGIRKFEKEVGPLDFIDEFSTEST
VLVDIAEELNNKKREVGGFELDTVLDNHAAINGVEGVEYAEPLVMGTSEGYPYVLERQPG
DVGKFRYFSKNLYHWELNEGPAKELDELEQSVAREDFDGKIITIACAKDEKTKLIKVYEK
PKTRIFEILPYHYNILVRKYYLFFMQFIMRMHNVLPCKVGLNPFSQDWDEMHAEHTRFEH
HFNGDYSGFDTGTPRQLLLKFADLISELAADGRRNKVIRRNLMQLAVDRRILVLAELYHV
RGGTPSGFALTVIINSMVNQFYLMWAWRKIMSRISPSMVTYRVMRTHCTFSVYGDDNVVS
FSLAVRDMYNLCTIADELKTIGVTLSDGKKTGVLIKWTGFKDLDFLKRRWELEPGHGFKC
PLDKMAIEERLFWVRKSEDNMESLDDNCYSALMEAFHHGPEYFHDLREKILDGYQSAGLA
APVLLHYQEARSIWFEQHKVGAESDFFAGVQNHLLPSIVGKDVIRTISTTVDWSSIRRYN
EAFASGNYNRTKVFLDPLAKEILWLKSKSGPHLSIPASLRKETFQSIIEGINRVVPGEIC
VVDGRGDKSGLVVALALAMDREEISQAQGHNMLLALVTTNKEVEYGLQLFNVLEATSRPS
VSLSPKFTTPPAELLKTIVGVELYEVTEAVKKMPFGSVGPSLRGRMALFYSDGAFDYAHD
KYHYTSQGWPREVDDLAKKLGGYNSCLVQKYDKGAYIPFHADDEPCYDDNDSVITVNLNG
RATFIVRNKTTGAETRRELHHGSILEMLPSCQKLCKHSVNVRDQGRVSLTFRRQRRTMNG
TPI
NT seq
6492 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatctcaccaaggaccttgccgcattcatctctgcagctactgaggccggttat
tcatttgataacgcttgcgaactatatcaacgattcaagatcgttgaattgaacgcaaat
cccgtttcccgcgctttctgccacacttacaaagagtgggtagacgagcagttcaccatc
cccacacctgaggatatcgatattcttaccgtagacactgtcgattcttctaaccctgct
gtgcccgaccatagcacttcagaggatgtggataccattcattgtgactcttgtgatgat
gctgaaggaccacctagtccaatcagcgtacttcgatccccgcttgagggtttcgatgtt
gatattggtgaggctaacaagtctcttggaattgacgtctccgcctacccgtgcctgcca
aagggtaaggagaattgcgatcttaagaatatcatggcaggtcatctgtttaactcacct
attttcccaatttctgcaattaagcaggaaatcttagcagagaaagatttgaaccgcctt
gcctcccttttcgatgttgttaacactgttactcattctgttggattggagcaagagggg
ttttctctttcttcattgactggagcaattaagagccgcatttcaggggccactggactt
gcggcgtcaatggtcgatattgtggccaatctatcttcagcttcctctctgctggagaaa
atctttcagcgcattatcactgcgttcgattacattgctagttccattggcacttttgga
acttttcttactggaataaaggagaaaatcattgaaaaatgcaccacattgtgggagaaa
ttggctgagtggggtgatcacttctactacattatacccacattctgcgcagtgttcctt
gtctccatcacttgttttcttataaacaagtttctcgcagctgtggcgcccacctactgc
ttcagcatgagcgtgatcgttcatctcatagttgtttgttgtgctctcgtaggttgcgag
gagcttggcgctgccctactatccttgaccaaggctggtaaattgaattttctgaacatg
atctacagcacctttggagcggaggccggagaggcaaatatcacagtggatgataaacaa
ccctctacatatcatggagtagatggtgtctttgatgatgtgccactcaatgaaggagct
tcctcaatgactggcttcttcggagttcttggcttactgacgttctttaccccaaaggag
ctcaaattcgatctctatgagatgacaaaatgggctcatggtctcaagggtttggccgac
ggttatgagaaattcaaagtggtggctgagaaactagctttttgggcctacgagaaagtt
ggacttgctgctacttgggacgcccctgcgattcaaagcatgattctagttactggaatt
cgttttcaagattggtgcaaagaggtcgatacccttgccgtggaaatgcaaggatcagca
agcttacaggaagatttgtcgagagcgaggaaattgaaggagcaaggcattaagattcag
gattacatggtccgaggagactcctcaatctcattcatgatgagggagcgccttaaggcc
acaatgggagtgattaatgatatcgtgagcaaatttgagaaagccatcgacataggtggt
acaagaatgtgtccatttacggtattattctttggtgctcctggcgttggaaaatccaat
actatgggacccttcatgcatgaaataatggacagaaatggagaatctaagattggtagg
gtgtaccctagaaattctggagatgagcactggtcgcattacatgcgacagacggcactt
gtatatgatgaatttgcacagcggacccctacaccaggaaagagtgatgaactggagttg
atacctttggtttcttgtaaccattacccattggttggggctgcaatagccgataagggt
ctgtctttcaactcaaaatacatcttcatgtgctcgaacagggcagatgtttcggctgga
gctggtttggctgatccggatgcttttaggaggagaaggcacgtatgtgtggaagtcttc
aaagacgacactctgccatttaagcccgatgagccttactacaatcagacttttcagctc
aagaatcctttgaggccaagagatcccctcacttttgttgacgcggctggacataatcaa
ccatatcagagaatgacatatggtgaactctgcctgtatgtggcggaaaaatctgctgaa
cactttgacaaggaagcgaaatcgctcaggttcatgaggaaaacccaaggattaccggaa
ggtgatgaatttgttcaagagggtccctttagtggtttcgacggtagtttgccaatctct
gctaaggccatatcagagctatcaatgccccatttccatcaggcagacgagacccaccag
atacatgggtgcactgaccataaggtcttttgttgcagtctatatgggacgaagtgcaat
gtggaacatacagctgccgagatatcttacgtcaagatggtccaggatgacattcaccca
tactcgtacaccaccaacttggcgataagtctggcccacagtgacagaactctatgggat
gtaaagggattccggaagatggtgaagagaataaaggggtacggcattgatgatgttccg
gaaccaattgatgcccagacccgaacatttgtggagagtgcttggaaggggttctcagac
agagatagatatctcattttcaagtattatgagattaatgattcattcaagcagaaagct
ctggcgaaggtggacatcataaaagaggagatcaagtcctggagtgttgccggttgttgg
aaggccatgcctatgggcgtgaaatggatgatcggggtcatagcacttttctcatttgga
tgtgtgttggtggatttcctgcatacacttatgtcgatgaggtcgtggagcccagtggat
attcttggaaacgttttgggggccacaggagcttttggcgttttggcttttacgtctgaa
ggaggatcgtatgcaggttcgggagtgaatatcgaagccacgaagtaccgggacaagaaa
ataaagccatactctcagaatggtggccctggtggagccaatttcacgtacaatgaactt
gagtcaattgaagccatcaagaagggccagtatctgctgtcgtacagcaatacctgtggc
atgagtggcgttgctgcagttttcatgtacaaggaccattcgtttctgatatccactcac
gaggccgattggataaatttcaacaagacctgcttcatgatcggaagagatggaacttcg
agggaggttagcttggccgcttctggagtgaagaaggtcacaagggatggtttcattgag
ccagtttgctccatagacatattaccgactaccccggttggtaaggccagctctcaatca
gtgtggtatgacttccacaagaccaatgaaggaaggaaggtcggtgtgattgtgccaaac
aacaggaaggacatggcacaggaatgtaccaaggtccattttagacggaacaaggaggtt
acagattgctacaattttcctgggagttctaaaggttggaaggccagtgatcttctgcat
gcaaaggctcctcatgggaatggaatgtgtgggaggttgttgttggcccattgtcccgct
ggtaatctgatggttgttggattgcacgttagtgggggaggtcttaacgagagagccact
agcatctttggcgggatagatggctcctacaaggacgtcgaggacggaaagttttatcag
caaggggacttggatgtgcacatgaaagaactgatagaagcagagagagtgacagatatg
gttgacaagatcgggcgagttgattcatcgcagcaattcaggccctcacaaggaacctca
atcattaagagtgaaattcatgatgacttgtggaggagagcggaaacttgccccacagta
ctgactcgatcggatcctcgccccgaagtaccgttcgacccttaccaggctggtatccgg
aaatttgagaaagaggtggggccccttgatttcattgatgaattttcaacagaaagcaca
gtgcttgtggacatagctgaggaactgaacaataagaagcgagaggttggcggttttgag
ttggacactgtgctcgacaatcatgctgctatcaatggagttgaaggtgttgaatatgct
gagccacttgtgatgggaacatctgaggggtatccctatgtgctcgagagacaacctggg
gatgttggaaagtttagatacttcagcaagaatctctatcactgggagcttaatgagggg
ccggcaaaggagctggatgaactggagcaatcggtggcaagagaagattttgatgggaag
atcataaccattgcctgcgcgaaggatgaaaagaccaagctaatcaaggtctacgagaag
cccaagactagaatttttgaaatcttaccctatcattataacattctggtgaggaaatat
tatctcttcttcatgcagttcatcatgagaatgcacaatgttctgccttgtaaggtcggt
cttaaccctttctctcaggattgggatgaaatgcatgcggaacacaccagatttgaacac
catttcaatggtgactattcggggttcgacactggtactccaaggcagctattacttaaa
tttgctgatcttatctctgagttggctgccgatgggaggaggaacaaggtgattagaagg
aatctcatgcagctggctgttgatagaaggatcttggtattggccgagttgtaccatgtg
agaggggggactccatctgggttcgctttaaccgtgattatcaactcaatggtcaatcaa
ttctatctgatgtgggcttggaggaaaatcatgagcaggataagcccaagcatggtgaca
tacagggtgatgagaacccattgtactttctctgtgtatggggatgacaatgtcgtgtct
tttagcctggctgtaagagatatgtacaatctatgcaccatagctgatgaactcaagact
attggggtcaccttatctgatgggaaaaagactggagttctgattaagtggaccgggttc
aaggacctcgatttcctgaagagacgatgggagttggaaccagggcatggattcaaatgc
cctctggacaaaatggcaatagaggaaagactcttctgggttaggaagtcagaggacaac
atggaatcgctcgatgacaactgttattcagcactgatggaggcgttccaccacggccca
gaatactttcacgacctcagggagaagatattggacggatatcaatcggctggtctcgca
gcacctgttcttctccactatcaagaagccaggtccatttggtttgagcaacacaaggta
ggagcggaatcggatttctttgctggggttcagaatcaccttctcccaagcattgtcggc
aaggacgtgatcaggactattagcacaaccgttgattggagctctataaggagatacaat
gaagcatttgcgagtggcaactacaacaggaccaaagttttcctcgatccgcttgcgaaa
gaaattttgtggctcaagtcaaaaagtgggccccatctgagtatcccagcttcgcttagg
aaggaaactttccagtcaatcatagaggggataaaccgggtagtgcctggagagatttgt
gttgtggacggcaggggtgataaatcaggattagtggtagctcttgctctggcaatggat
agggaagaaattagtcaggcacagggacacaatatgttgctggcattggttactactaat
aaggaagttgaatatggacttcaattgttcaatgtcttggaagccacaagcaggccgtcg
gtttcattatctccaaaatttaccactccacctgctgaattgctcaaaaccattgtcgga
gtggagctttatgaagtgaccgaggctgtcaagaagatgccttttggtagtgtagggccc
agtctaaggggtaggatggccctattttactcagatggggcttttgactatgcgcatgac
aaataccactacacttcacagggctggcccagggaggtggatgacttagcgaaaaagctt
gggggctacaattcctgtttagtccagaaatacgacaaaggagcttatatccctttccat
gcagatgacgaaccatgctatgatgataatgactctgtaatcactgtcaatttgaatggt
agagccactttcatcgttaggaataagacgactggggcggaaacccgccgcgaactgcac
catggatcaatacttgagatgctcccgagttgccagaagttgtgtaagcactcagttaat
gttagggaccaaggaagagtgagcctaacttttaggcgtcaaaggaggaccatgaatggg
acccctatttaa
DBGET
integrated database retrieval system
