Viruses: 5076755
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Entry
5076755 CDS
T40000
Symbol
BRNV_sRNA2gp1
Name
(RefSeq) Black raspberry necrosis virus; polyprotein
Virus
367301
Black raspberry necrosis virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Nepo_coat_N
MP
Motif
Other DBs
NCBI-GeneID:
5076755
NCBI-ProteinID:
YP_654556
RS:
NC_008183
UniProt:
Q1G658
LinkDB
All DBs
Position
NC_008183:224..5425
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AA seq
1733 aa
AA seq
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MLWFLIYFILSLVILLLSFYSLVLIPYNSPAYVFVELRKKHLRFRFTCSVRYSFRSLLVE
QVIGALFWIALIYLVRVVQLSFRLLFRVSARSVARCISLSKSFYVMSSSNIQEAYDKAAA
AFNDSSSSIAQAIALSKEKAWLARPDECEAAITTMLSKGKIYVTNNIRNRLLWRSVPSAV
MGHFNTGFVPAVSTKESKEPTISNVVLSDAVKKYLADVGYTTTQYKTSATGKIRGVTSQQ
PAAIVRVDVMSLRTESLVSQSNAGVTLSLALDGRAKKPEAAILGGHLHFTKDDAISTSLF
YPRFSLSSQEKNLDECVQVWSTSQGYNLKPGSIASATCSAMVGEVTTQMGATSMIAPVMD
QLEKAKKQTMSLGALPIHPYRPTENNVDEVVMNWEGATTSLDFIGSSAGTSEWAPRNSEG
NRSIRFSGLKAIDGPGTSNEKHFITQEELLEEENPREPRERPNVRPRPARNYDDDFVEEG
DGMPMQPIVIAKEHIHFPDSDYLKEDVHIYTGSVSVPQVSTDTAVLAFLNLFEGMGLDDS
KDPFISKLKLASLVVPKFKVRVRFSLPSMYSCPIIISWDEGRCIGDTYALEDLVQLPFCV
VGPTVGQAYTDFSFETYGRTGAFSLARKISCSAGTLYFSCMPHDFATLEGKISLHYEIWL
GQGTIISQGLFPQLPSQKATLVTGLTERTYCANLVGNTHLGRMVLDHNTDTEKFFLLAVR
PGVGAISSDGKTIYGSNMSALCANWAFWNGTACISVNITARQNVAGQLSIYTLPPGYNTR
KLREKDCYHWPREVITFNGSQVYKFKALANSWLGACSTVGGAFVDQNDQNGNTLSFAVFI
NAGPSSCAGFSTQVDVLFTLTNIEDLTLSERITPQTHRAPRPTANYAPRKPWESKVLATQ
TEEIVEQGFGIQPPNFHRLYTLRNLKQTSEETWILPFTLAEPKRSNWKNCKVYNYESPEL
AADKEPLVIIDSTNPYRLLVQGSCFYSCHLEASVSLSSTKKKASAVTVGILKNPFYHKEI
GRAQKDGDVFGGGLRDATSILPGNIAILTQPERENIRSCCRPDLEKSGRAFLDTPSFLCI
IIPANSDVTEVETGYSVKGPLSLYGIGLPSPVDIPPTSKDRYMPHLTVGNPVIATTSENS
ALMPIGWWDSLKEEKLWSKYRKHCEIREPTKEHVQYLERKFRDNCFRVYNVYEPDAELKS
RMHLKFTKPKFTPGQDYALNMQFWLGSSRDNMYELIWRFDDSYPEGYIISYSTNMGNGNW
DKHTQWMSNLDRFAPRDEVDFGIQRHSDHSMTIFVDGIKAGEVRGCFPLGNILAGWEYQV
DLRFALVRKGSIPFSFRPTGTLRDVYINDLPSPMSLVRVETTSIQSNSSMYPLEPVQVGV
APAQLDYYLSNNIGFAKRGATKNTTQSNRKRVEKHGKLEEVVGEEEGGTRGEEVPTQEIL
SASPHLGSTIPVAYNTNIKGKGKGIEPMERVRIGSSWVRERNGRRRPEPMYPYGRLEKLD
NSLRNEPQTEKHHHFKWRGIEVSEGTDYHVCYRIGRTPFYGCCERDETPVNTIPLAIREE
AEESVRRRVLEALNPDELFEQYSHMYSQDILMEACSLTIQDYPPGNIKYVDVLDGVLKEF
GVNIRDYRYKENCGCCGRKEMVLQCNKGWRLNALRRGGFSIREGRRTGLDYLGSPSWTGG
VIGITSDLTPVVTRHVFGELVDQVARSMLAENQNNVPGYLKELEKFHPGALGL
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgctttggtttttgatctacttcatcttgtcacttgtgattctgctgctctcattttac
tcgctggtgctcattccatacaattcaccagcttatgtgtttgttgagttgcgtaagaag
catctcaggtttcgttttacttgttccgttcgctactctttccggtccttgcttgttgag
caagttatcggagccttgttttggatagcccttatctacctggttagggttgttcagctc
tcatttcgattattgtttcgtgtatcagcacgttcagtagcgagatgcatatccttgtct
aaatcattctatgtcatgtcgagctctaacatccaggaagcctatgacaaggctgcagca
gccttcaatgactctagctcatctatagcgcaagctattgctctctcgaaagagaaggca
tggttggcacgaccagacgagtgcgaggctgcaatcaccaccatgctcagcaaagggaaa
atctatgttacaaataacatcagaaatagattactgtggcgctctgtcccatcagctgtc
atgggccacttcaacactgggttcgtcccagcggtgtcgacaaaagaatcaaaagaaccc
accatctcaaacgtggtgctcagcgatgccgtcaagaaatatctggccgatgttggatac
actacaacccagtacaaaaccagtgctaccgggaagatacgaggtgtcaccagccagcag
ccggcagccatagtgcgtgtcgacgtcatgtcactccggacggaatctctagtttcacaa
tcgaatgctggcgtgacattatcattggcgcttgatgggagggccaagaagccagaagca
gccatactcgggggacatctgcacttcacaaaggatgacgccatttccacatctctgttc
tatcctcgttttagcctatcatcacaagagaagaatctagatgagtgcgtccaagtttgg
tccacatcacaaggttataacctcaaaccaggttctatcgcttcagccacctgttcagca
atggtaggagaggtcaccacccagatgggtgctacctccatgatagcccccgtgatggat
cagcttgagaaagcaaagaagcaaactatgtcactcggggctcttcctattcacccttac
agacccacggagaacaatgtggatgaggtcgtaatgaactgggagggggcaacaacatcg
ctggattttatcggaagttcagccggaactagtgagtgggctccgaggaattcagaaggg
aatcgctcaattagattttcgggtcttaaagcgatcgatggaccgggcacctccaatgag
aagcatttcatcacgcaggaggaacttttggaggaggaaaacccaagggaaccgagggag
agacccaatgttagacctcgccctgccaggaattatgatgacgatttcgtggaggaaggg
gatggcatgccaatgcagcccattgtgatagctaaggaacacatccactttccggatagt
gattatctcaaggaggatgtacacatttacactgggagtgtgtctgtgccccaggtctct
actgataccgctgttcttgcatttcttaatctctttgagggtatgggcttggatgactca
aaggacccgttcatcagcaaactcaaactggcaagtcttgtggtaccaaaattcaaagtt
cgagtcaggttttcattgccatcgatgtactcttgccctattatcatatcttgggacgag
ggtcgttgtataggtgacacgtatgcgctggaagatttggtgcagttgcctttctgtgtc
gttggcccaaccgttggtcaggcttacaccgatttttcttttgagacttatgggagaacc
ggtgctttctcacttgcgcggaagatttcctgtagcgctggtacactttatttctcgtgc
atgccccatgattttgcaacactggaagggaagattagcttgcattatgagatatggtta
ggccagggaaccatcatcagccagggcctctttccacaattgcccagtcagaaggcaacg
cttgtcaccggattgaccgagcgaacctattgtgctaatttggtgggcaacacccatctt
ggaagaatggtcctggatcacaacaccgatacagaaaaattctttttgctggctgttaga
ccaggtgttggggccatctcgagtgatgggaaaaccatttatggttcgaatatgtcagcc
ctttgtgccaattgggctttctggaatggaacagcctgcatttcggtgaacatcacggcg
cgacagaacgtcgcaggtcaactctccatttacacactaccaccagggtacaacacgaga
aagctccgggaaaaggactgttatcattggccaagggaggtcatcactttcaacggatca
caggtctacaagttcaaggcgctcgccaattcgtggctcggggcctgctcgaccgtaggg
ggagcttttgtggaccagaatgatcaaaatgggaacactctctcttttgcagtatttata
aacgctggtccctccagctgtgctggatttagcacgcaggtcgatgtgctcttcacgctc
accaacattgaggatctcactctatcagagcgcatcactccacaaactcacagggctcca
agacctactgccaactatgcacctaggaagccctgggagagcaaagttctggccacacag
actgaggagattgttgagcaaggttttggtattcagccccccaactttcataggctttac
actctgcgcaatctcaagcaaacaagtgaagagacctggatcctgccattcacattggcc
gagccgaagaggagtaactggaagaactgcaaagtctacaattatgagtctcctgagctg
gcagcggataaggagccacttgtcatcattgattccaccaatccataccggcttttagtg
caagggagttgcttctatagttgtcatttggaagcatctgtctcattgtccagtactaag
aagaaggcgagcgctgtaactgttggcattctcaagaaccctttctaccacaaggaaata
gggagagcacaaaaggatggcgacgtttttggtgggggattaagggatgcgacttctatt
ctcccgggaaatattgctatactcactcaaccagagagggagaacatccgttcttgttgt
cgcccagatctcgagaagtcaggaagagcttttcttgacacaccatcttttctttgcatc
ataataccagccaatagtgacgtcacggaagtggagacagggtactctgtcaaagggccc
ttgtcgttgtatgggatcggtctgccttccccagtcgacataccacccactagtaaggac
cgatacatgccgcatctcacagttggcaatccagttattgctaccacatctgaaaactca
gctctaatgcccattggatggtgggattccctcaaggaggaaaaattgtggtcaaagtac
cggaagcattgtgagatcagggaacccactaaggaacatgtgcagtatctggagaggaaa
ttcagggataattgtttcagggtttacaatgtttatgagcctgatgccgaactcaagtcc
cgcatgcacctgaaattcaccaaacctaagttcacaccaggtcaggactatgcactaaac
atgcagttctggttgggcagttctagggacaacatgtatgaacttatatggcgctttgac
gattcttaccctgaggggtacattatatcctactccaccaacatgggcaatgggaactgg
gacaagcacactcaatggatgtccaatttggataggtttgcgcccagggatgaagttgat
tttggaatccagaggcactcggatcacagcatgaccatttttgtggatggcattaaagca
ggagaagtacgtggctgctttccccttggaaacatactggcgggttgggaatatcaggtg
gatttgagatttgctttggttaggaaggggtccattcctttctctttccggccaactggg
actctgcgggacgtatacataaatgatctcccaagccctatgtcactggtgagagtggag
accacatccatacagagtaattcttccatgtatccacttgaaccggtacaggtgggagtg
gctcctgcacagctggactactatctctccaacaatattggctttgccaagagaggtgcg
accaagaacaccacacaatcgaacagaaagcgcgtcgagaagcatgggaagctggaagag
gtcgtcggagaagaggaagggggcacaagaggagaggaggtacccactcaggaaatactt
tctgctagccctcaccttggatccaccattccggttgcttacaacactaacatcaaggga
aaaggcaaaggcattgaaccaatggaacgagtcagaataggctcatcctgggttcgggag
agaaatggaaggaggcggccggaacctatgtacccctatgggagacttgagaagctggac
aattctcttaggaatgagcctcagactgaaaagcatcatcatttcaaatggcggggtatc
gaggtatcggaaggcactgattaccacgtgtgctacaggataggccggacgcccttttat
ggctgttgcgaacgagacgaaacgcctgtcaatacaatacccctggcaatacgggaggaa
gctgaggaaagcgtgaggcgcagggtacttgaagccctcaatcctgatgagctctttgaa
cagtactcacatatgtactcgcaggacatcttaatggaagcctgtagtttgacgatacaa
gattacccgccaggcaacatcaagtacgtggatgtgttggatggtgtactcaaggaattt
ggagtgaacattcgggactacaggtacaaagagaactgcgggtgttgtgggagaaaggaa
atggtcctccaatgtaataaaggatggcgcctaaatgcactcagacggggtggtttctcg
atccgggaagggagaaggaccgggttggattatcttggatcaccatcgtggactggaggc
gtcattggcatcactagtgacttaaccccggttgtcacacgccacgtatttggtgagctt
gtggatcaagtagccagaagtatgctagctgaaaatcaaaacaacgtgcccggttacctc
aaggagctcgagaaattccatccgggcgctttaggtctgtag
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integrated database retrieval system
