Viruses: 5141354
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Entry
5141354 CDS
T40000
Symbol
HdRSV_gp1
Name
(RefSeq) Hydrangea ringspot virus; viral replicase
KO
K26615
Alphaflexiviridae RNA-directed RNA polymerase
Virus
112228
Hydrangea ringspot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
Vog
Vog cluster
Motif
Pfam:
Vmethyltransf
Viral_helicase1
RdRP_2
AAA_22
AAA_33
Motif
Other DBs
NCBI-GeneID:
5141354
NCBI-ProteinID:
YP_224084
RS:
NC_006943
UniProt:
Q5DKR3
LinkDB
All DBs
Position
NC_006943:96..4256
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AA seq
1386 aa
AA seq
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MSRVSQVLASISDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDP
YAVAAHTHAAAKCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLF
EPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPP
EAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITA
QRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMF
LYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFSHLLRCILSGS
ALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGS
FKALPLGNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTLFAPH
TTAPEEDITHRVLALKVPRGSPPPGFEGPSSSAQPEQEKEVAKPATPPEQEKQPEGQKMI
TRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGHEL
VMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTV
GLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERA
FTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAP
ATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKS
AYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHS
SFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKV
PEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEF
YKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSP
DFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGP
NHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFNIPGE
IIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDD
SAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASL
KLLQATSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTLVKLTKGA
YLATLE
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcgttagccaagtactcgcatccatctccgacccctctctcaaggcggtcatc
caagaagaggcttacaaatccattcgtaccacattgcaagccgccaaacatctcaacccc
tacgctcatccatcagagactgccgagtttctagagcgccagggcatcatttcagaccca
tacgccgtcgcggcccacactcatgcagcagccaaatgcttggagctggacctgtacgcg
agcgtatcgcactacatgccaaaggagaaccccgtaacattcctcttcatgaaacgggcg
aaactccaatacttccggagaggaacccaacaaggagacgtctttgttaacaccctcttc
gagcccaaggatgctgcccgatacccattagacacgatctgcagcgccattcccccaatc
caaacacagatggcattcatgggagacacgctgcacttcctggagccggcgttcctcaca
gacctcttcgaccgctccccgcacctaaacaccctctatgccaccatggtgctgccacca
gaggcaaagcacaaacttcgctccctccaccccttggtctacacattgcaataccttaaa
gaccacttcatatacctccccggaggacacgccggggcctcctactgccacacgtactca
cagcttcagtggctggacgtaggacacatcgtttcaccgtcagggaactgcatcactgcc
cagcggatcgaaaccaaagcggcgaaccacctcttcgtgttcatcagagggcgcctcaac
accccccccatgagatccttcgcacccatgcgggcatactgcacactccccgcaatcttt
ctccccacagagtttaactcccggacgccctacaccaaaaccttcctccaacagatgttt
ctctacctgaaaagcatcaagaagccaactgagaccgacctgtacgccaagttcaggcag
ttgacgaagaccgatgacctccaagaactggacccgaagagatcacactatggtgaacta
cttcctcctcatctcgaggctcgattcagtcacctgcttcgatgcattctctcagggtcg
gcactccggaggctgctcaagcccctaatctgttggatggagaagatgagacagaccatc
tttggccgggaggaattcgtgagactcatgaaggccctcgagtggacggacatcaccttc
accgagcaagtgatggcctaccacacgggaagtacgtgggagagattcttgggaggcagc
tttaaagcgctccccctcggaaatgagctcggtccaggcctccccgaggagctacgggca
gaagtggcaaggtactacggcaacgctctgctcacgggactggacgagactgaccccaag
gccgaagccttcgctctcctctgcaacaacccccacgggaccacgctcttcgccccacac
accacagcccccgaggaggacatcactcaccgagtcttggcgctaaaagtcccgcgcggc
tcccccccccccgggttcgaaggccccagcagttcggcccagccagagcaggagaaggag
gtggccaaacccgccaccccgccggagcaggagaagcagccagaaggccaaaagatgatt
acccggcctgtctccgcgctcgaaaacgcccttccctggaacaaatggaccccgatactc
cggggacttgggttccaggcccgagaaatccaaaggagcccgcatgacaattcagttatc
atgccaatcacgaacatcgtcagcggcctcccaataagccaaattcaggggcacgaactg
gttatgggagtccttgagaagctctcacgcaaaccgaccccatggaccccctgccccctc
cgagcccggtcctacacctccgacatcaaaaaccacaggacgggagcgcttctcctcaag
gaaagcgccacctggaaggagacccaaaccctcaaagcggagaggttggagaaaacggta
gggctctctgttatccacggatgcggcggctcaggcaagtccttcgccttccaggaattg
ctgaggcaacacccggatgtagatctccaggtagtcttgcccacgaacgagctccggctc
gactggatggccaaagccccaaaggtaaggccagagaagatcaagacctacgagcgggcg
ttcactggagtctcatcgccagtagtccttttcgacgactacggcaaactgccagccggc
tacatcgaagcctacgtggcagtgcaaactagggtggaactcgtgatcctcacgggagac
gcgaggcagagcacccaccacgagaacaacgagcaggctatgatctctcaacttgcccct
gccactgaagtgttccaacccctctgccgctactacatcaatgccactcaccgaaacaag
agggacctcgccaacaaactggaggtttactccgaaaaggagggggagaccaagataacc
atgggtttccaacccatcaaggaccttcacctcctcgtgccctctctcctaaaaaagtca
gcctacggcgagatgggacacaaagtttcaacctacgcgggctgccaaggcatcaccgcc
ccaaaaatccaaatactgctggacaacgacacggtcatgtgctccaaggaggtactctac
acagcgctgtccagggcggtccactccatacacttcatcaacacagggccaacgcacagc
tccttctgggagaaacttgaggccacaccctacttgaaagccttcctgagcacggtcaga
gaggaggccattgcagcgcaccagttgccgagcgcggaccccaggccagacccagagccc
aagacgcacttcccggtggaaaacacatcgtgcgcgctcggggcctacatggaaaaagtg
cctgagaaattcgaacgggagatcttcacggaagaccggggccacaccaactgcgtacag
acgcaaaaccccttggttcagctctttccccatcagcaggccaaggacgaagctctcctc
tgggagacaatcaaggctaggctgacaataagcagccccgaagcgaactgggaggagttc
tataagaagaaggacatcggggacatcctctggctgcactacaagaaggctatgaccctt
ccagaggagccacttcccttctcagaggatctctggagactgtccgcggccgaggtgcag
aacacttacctctccaagcctatgaacatgctcaaaaacggcgagaggagacaatccccg
gacttcgagaagcaccagatcttactcttcctcaagtcgcagtgggtgaaaaagatggag
aagctaggcggacctaaaattaaggctgggcaaaccatagcctcattccaacaacacgcc
gtcatgctgtacggaacaatggccaggtacatgaggaggttccgggaagccttgggccca
aaccacatcaagatcaactgcgaggccaccccaaaggacctttcccgctttatccaaaac
tactgggacttcaagccagcgtcctacgctaatgacttcaccgccttcgaccaatcccag
gacgccgccatgctccagttcgagatcctcaaagccaaacacttcaacattccgggggag
atcatccaaggatacctggacatcaagctgaacgcaaagatcttccttggagtcttaggc
atcatgagacttacgggtgagggaccgaccttcgatgccaacactgagtgcaacatcgcc
tacacacatacaaggttcgacatcccgcccggcacggcacaactttatgctggagatgat
tccgcgatcgcttgcgtgccacccgagagaccctccttcaagctgattgcaaaatcactt
gccctggaggcaaagcccgtctatgccccacaagtcgccggggcctgggcagagttctgc
ggctacctcatcacgccaaaaggcctcatcaaggacccggccaaactctttgcctccctt
aagctgctccaagcaacttcgggaagcaagaaagagctcgtagaagcggcgggcaattat
gagagagacgtcggcctagcctacgccctaaaggactccctgtacgaaatcctctcccca
gagcaagcagaactccaccaggaaacggttagaaccttagttaagctgactaagggggcc
tacctggccactctcgaatag
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