Viruses: 5983628
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Entry
5983628 CDS
T40000
Symbol
RdRp, AV-3_gp1
Name
(RefSeq) Asparagus virus 3; RNA dependent RNA polymerase
KO
K26615
Alphaflexiviridae RNA-directed RNA polymerase
Virus
445435
Asparagus virus 3
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
Viral_helicase1
RdRP_2
2OG-FeII_Oxy_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
5983628
NCBI-ProteinID:
YP_001715612
RS:
NC_010416
UniProt:
B1B3N8
LinkDB
All DBs
Position
NC_010416:82..4926
Genome browser
AA seq
1614 aa
AA seq
DB search
MAKVRASLERIRDPSVQTAISEAAYAHVRPVLKEALVNCPYALTDAEADCLENFGITVNP
YATQTHTHAACKAIENRLLEIVGKHLPKERCTMLFLKRSKLRYLRRAAALKDDFINQDVE
PKDLFRYDRDTIRTRLKDINTPIAYMSDTLHFMSHSELIHIFADSPKLQTMLATVVLPIE
AVHRRSALYPALYSINYGPKGFEYIPGNHGGGAYFHPYDTLDWLKVRQLQGKDYYGIDTD
LTLTFQLVESLGANHLFIIQRGDLRTPLMRTFCRNALVTMPKIFCPESMNANRPLTKTKA
MQMLMYCKSVKQVSERDIYAKFRQIISTQELELYEPDEIVHLCNYFNFVAHLDSITCYED
LLGNSLWRRLTIPIRTTITKALDFFRGQQSFSKLLGALKWESFSYSLEPIDFTVRYHSAS
ARLLSSKTGLAVPAAAAIIKDSRSDPTLFSEEDLEEAPFEDFLGRLSFPPNAPRNDPTST
DDSDGSPDTPDDPPVEPSPAGPAPANEASTSSTSSGPPVHHSDWQSATILHMLTNLPFLQ
LKGRRAYFFATHPVIDYGHDRVLYSTLAWPSTLTDIVSSLHILTNACLVQVYEEGASIPW
HRDNERCYEFDPITTLNFGKATFEFEGGVALKLDEGDWFSMAGPLLHLRHRVTAHSPMRI
SLTFRLHKHNMLGVPLPDGLTLPFTPAPEEPTTPHSNDGTSSGANDTTATKPDPPPTSFR
SPIHPDPAADLTKQPVTPLPWASWVPLLQNHGFDGQQMQHDPAGNLIIPVQDIHRLAHCA
YPDEVPECLRHTLNTIKRHPVEITIDHQRASSYASDIKNCRTGKLLAQMDMKWKASFAYK
MQHESKTVTGTVIHGCGGSGKSHAIQTWMRTLPADQTIVTVITPTVLLRNDWSTKLPILP
SDVFKTFEKAIVQPCNPVVIFDDYTKLPPGSIEATVMHHSNISYIVLTGDSRQSVYHELN
AEAYIATLPEAVDVFTPFCEFYLNATHRNVQSLANKLGVYSERQGRLKINFASHHLKASR
TPLLVPSTMKRNAMADMGHHSMTYAGCQGLTAPKIQILLDSHTQFCSDRVLYTCLSRAVD
SIHFINTGPTTGDYWAKLESTPYLKAFIDTYRDEKTELYNSEPASDQPREPEAPTTHFPL
APKPLLEPLVSTLPTKEEREIFSRSTGYSDTIQTEDPEVQLFQHQQARDETLYWATIDAR
LSLATPEENLQEFNMKKDVGDILFMNYAKVMNLPAEPVEFEERLWEVSAAEVRNVYLSKP
VGNLINAAARQSPDFPKHKIALFLKSQWVKKVEKLGALKVKPGQTIASFMQETVMLYGTM
ARYLRKMRQRFQPPNIFINCERTPEDLDTFVKTQWNFARPAHTNDFTAFDQSQDGAMLQF
EVMKAKFFNVPSEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFH
IDSGTAQVYAGDDMALDRICPEKSSFHRLERQLKLTSKPMFPKQVKGDYAEFCGWVITPA
GIIKHSLKMYASIQLQKKLNNIKESARSYALDLRYAYKLGDSLQDHLTEEEAAYHQQSVR
DMHLLHQSETLAHGPSSPPHHFATTEPIRTKTQKRNATKRKQKVRLADIAPPAY
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagttcgagcgtcgttagagaggatccgggacccatcagtgcaaactgctatc
tcagaagcagcttacgctcatgtacgccccgtcctcaaagaagcattagttaattgcccc
tacgccctcaccgatgccgaagcggactgtttagaaaacttcggtatcactgtaaatcca
tacgccacccaaacacatacccacgccgcatgtaaagctatagaaaatagattattagaa
atagtaggtaaacacctccctaaggaacgctgcaccatgctcttcctcaaacgcagcaaa
cttaggtacctccgacgtgccgccgctctcaaagacgacttcatcaaccaggacgtcgag
cctaaagacctcttccggtatgatcgggacaccattcgcaccagactcaaggacatcaac
accccgatcgcctacatgtctgacacgctccattttatgtctcactcggagcttatccat
atcttcgccgattccccgaagctccaaaccatgttggccacggttgtcctaccaatcgag
gccgtgcaccgacgctccgccctatatccagccctctacagcatcaactacggacccaaa
gggttcgagtacattcctggaaatcacggcggcggagcctacttccacccgtatgacacc
ttggactggttaaaggtgcgccagctccaaggtaaggactactacggcatcgacaccgac
ctcactctcaccttccaactcgtcgaaagcctcggggccaaccacctcttcatcatccaa
cgtggtgacctccgcaccccccttatgcggaccttctgccgcaatgcccttgtcaccatg
cccaaaatcttctgccccgagtctatgaacgccaaccgcccactcaccaaaacgaaggca
atgcagatgctcatgtattgcaagtccgtcaaacaagtgtcagagagagacatatatgca
aaattccgacagatcatctccacgcaagagttggagctgtatgagcctgacgaaatagtg
catttgtgcaactacttcaacttcgtcgctcacctcgactccatcacctgctacgaagac
ctgttaggcaactctctgtggcgccggctcaccatccccattcgcaccacgatcaccaag
gccctagacttcttccgcggccagcaaagcttcagtaaactgctgggtgcgcttaaatgg
gaatccttctcctactctctcgagccgatcgatttcacagtgcgctaccacagcgcctca
gctcgactcctctccagcaagaccggtctcgctgtcccagccgctgccgccatcatcaaa
gacagccggtccgaccccactctgttctccgaagaggacctcgaagaagcccccttcgag
gatttcctaggccgactctccttcccccccaacgccccccgcaacgaccccacttccacc
gacgactccgacggctctcccgatacacccgacgacccaccagttgagccgtctcccgcc
ggacccgcccccgctaacgaagcctccacgtccagcacctcatcaggcccgcctgtccac
cacagcgactggcagtcagcaaccattctccatatgctgaccaacctacctttcctccaa
ttgaaaggcagacgggcatacttcttcgccacccaccccgtcatagattacggccacgac
cgtgtgctttactccactctcgcttggccctccacgcttaccgacatcgtcagctctctt
cacatcctcaccaacgcatgtttggtgcaagtttatgaagaaggagcttccatcccatgg
caccgggacaacgaaaggtgctatgagtttgacccaatcactacgctaaacttcggcaag
gccacctttgaattcgaaggtggcgttgccctgaaactagacgaaggtgattggttctcc
atggccgggccactactccacctgcgccaccgagtcaccgcacattctcccatgcgcata
tccctcacgtttcggttgcataagcacaacatgctgggcgtgcccctccccgacggcctg
actctccctttcacgcccgcaccagaagaacctacgacacctcactctaacgacggaacc
agctccggggcgaatgacacaaccgccacgaaacccgaccccccccccaccagctttcgg
tcaccaatccaccccgacccagcggctgacctcaccaagcagcccgtcaccccgcttcct
tgggccagctgggttcccctgctccaaaaccatggcttcgacggccaacaaatgcaacac
gacccggcagggaatttgatcattcccgtgcaggacatccatcggctggcccactgcgct
taccctgacgaagtycctgagtgtctgcgccacaccctcaacaccatcaagaggcaccct
gttgagatcaccatcgaccaccaacgcgccagctcctacgcatccgacatcaagaattgc
cgcactggcaagctgctggctcagatggacatgaagtggaaggcctccttcgcttacaag
atgcagcacgaaagcaaaactgtgactggcacagtcatccacgggtgcgggggttcaggc
aagtcacacgctatccaaacttggatgcgcactctccccgctgatcaaaccattgtcact
gtcatcacacccactgttctgctccgcaacgactggagcaccaagctgcccatcctcccc
agcgacgtcttcaaaacttttgagaaggcgatcgttcaaccatgtaacccggtggtcatc
ttcgacgactataccaaactcccacccggttccattgaagcaaccgtcatgcatcacagc
aacatctcctacattgtcctaactggagatagcagacagtcggtgtaccacgagctcaat
gccgaggcttacatcgccaccttaccagaggctgtggacgtcttcacccccttctgcgag
ttctacctcaacgctacacacagaaatgtgcagtccctcgccaacaaactgggagtctac
tcagagagacaaggtcggctcaaaataaacttcgcttctcaccacctcaaggcttctagg
acaccactgctggtgccctccacaatgaagcggaatgctatggcggacatgggtcaccat
agcatgacctacgcagggtgtcaagggctcaccgcaccgaagatccagatcttgcttgac
agtcacacccagttctgttccgaccgtgtgttgtacacctgcctctcccgcgccgtcgat
tcaatacacttcatcaacactggcccgactaccggcgactactgggcaaaactcgagagc
actccctacctcaaagctttcattgacacctaccgggacgagaagaccgagctctacaac
agtgagcccgcttctgaccagcccagagagccggaagctcccaccactcattttcccctc
gcccccaaaccactactcgagccgctcgtgtcgacactgcccaccaaagaggaaagggaa
attttctctcgctccaccggctactccgacaccatccaaaccgaagatccggaagtgcag
ctcttccagcaccaacaagcccgagacgaaaccctatactgggccactattgacgctcgc
ctctctctcgccacccccgaagagaatctccaagaattcaacatgaaaaaagacgtggga
gacatcctcttcatgaactacgccaaagtcatgaacctccccgccgagccggtggagttc
gaagagagattgtgggaggtttctgctgctgaagtcagaaacgtctacctcagcaagcct
gtgggtaacctcatcaacgcagccgcccgccaatcacccgacttcccaaaacacaaaatc
gcccttttcctgaagtctcagtgggtgaagaaggtcgagaaattgggtgctctcaaagtg
aagcccggacagactatcgcctccttcatgcaggaaactgtgatgctctacgggacgatg
gcccgttacttacgcaaaatgaggcaaagattccagccgcccaacatcttcatcaactgc
gagcgaactcctgaggacttggacacctttgtcaaaactcaatggaatttcgcccgccca
gcccacaccaacgacttcaccgccttcgaccaatctcaggatggcgccatgctgcaattt
gaggtcatgaaagctaaattcttcaacgtgccctccgagatcatcgagggatacatttac
atcaagcttaacgcggccatcttcctcgggactctgggcatcatgcgcctgtctggcgag
ggtccaactttcgacgcaaataccgaatgctccatcgcctacaacgccacccgcttccac
attgacagcggtaccgcccaggtttacgctggagatgacatggcccttgaccgcatctgc
cccgagaagagcagcttccaccgtttggaacgacaactcaagctcacatccaaacccatg
ttcccaaagcaagtcaaaggggattacgctgaattctgcggctgggtcatcacccctgcc
ggcatcattaagcattccctgaagatgtacgcctccatccaactccagaagaagctgaac
aacatcaaagagagtgcccgttcttacgctctcgacctccgttacgcttacaagctgggt
gattcactccaagatcacctcacagaagaggaggccgcctaccaccaacaatccgtgcgg
gacatgcatctcctccaccaatcagagactctcgcccacggaccctccagcccgccacac
cacttcgccacaacagaacccatccgcaccaaaacacagaagagaaacgccaccaagcgt
aaacaaaaagtgcggttggccgacattgcaccacccgcttactag
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