Viruses: 6302928 Help Entry 6302928           CDS       T40000                                  Symbol RaMV_s1gp1 Name (RefSeq) Radish mosaic virus; polyprotein Virus 328061  Radish mosaic virus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  RdRP_1 RNA_helicase Peptidase_C3 AWPM-19 Motif Other DBs NCBI-GeneID:  6302928 NCBI-ProteinID:  YP_001911126 RS:  NC_010709 UniProt:  A7M6L1 LinkDB All DBs Position NC_010709:340..5901 Genome browser AA seq 1853 aa AA seqDB search MACVTLDRDQQSYALIPYVTDKHVTWLLKCYVRVNTFDPDFPVTKRLERLRQHHFDLLCL GYGAFVMHRNAMAHVPRTVETADFIFEDYHQFLCDLVTGNAGITRLRKYINVCYGTYLDM VLEFSACTLDDEGDEDFELQGLKSCLHSLANYIPSTLDRAISWSTNKVIDGIRARFEEVV AEWCPMAMQACSWISNIWDKVTVWVQESIEAMRWFLKGARELFYYGVSILTASCVIGIVE KILVATNLLAPNRGLVEAFLSSAALTGAFMSFKKKEDPTPMITMISVLAGVVSAAVTAMF GAPCVAVLQGPVELLESAATALGIFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLFGI LQDFIWKVFGMESRFLRDASLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQALVK KGHDMRSKVLKVTSRISPVLANTVTRGVESVEKLLRESLCQGVKATRRIPFVVYAYGESR TGKTLVVDKLITDFQNHFGLGKDTVYSRNPIDQYWSGYRRQPIVSIDDFGAVTCDPSMEA QMIPLVSSAPLPLTMAAIEEKGMMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLIN VKLDATKPYNMHDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHENEQTAN LANSLEEPKADGDFINFEFLMHTLIRRNLPDKMVDVIFEERTKTQFVPLVTYRRKGKLWS YYVSPEGRIQTIAESLEDPKALAKEVESMDFLRRMYEMLRYNEETDLIVKMHLKDLARED FYDDKMNYIGTFGNEREHALMRSTFDSMAGWHKVVLCGMGVLQDRCSSVKWYDGIIEKIQ DTMYTLYSKEISEWPMGLKIVVGVLLTSLFGAGLWKLMGVLQGTGSVAALGVTAATHFGH EHGGARATAQSRKPNRYDVAQYKYRNVPITKRAWAQGDMPISHATAMIFDRIKASWQYGH TEAQIAMVPGRRFIGYSHFFRTIERPIQVRIHTASGSQPLFYKPENMHYFEESELCVYED SALQDIAHTCWDLFEWDFEQIQQDSFKALFLSCKRKSSTGQPNPEWADIDVRTRSESLMV QEGEYSRVLPRYLEYTAPTVNHDCGSLIVAEVNKTFKIIGVHVAGSGGTKGYACLLPPLV KKVQAQHAQKYFDYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCDK YPSILSSEDPRLEVSGQTDYDPFKAGILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEG ETFEEVSLEQAINGVKDVDYMDRIPLATSEGFPHILSRAHGEKGKIRFVEGDSEEMMLIP GTSVSEALDIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRR RFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLLSKQVM KAMSDMINNFCGGSESSKRKREHLLMACCSRYAICKNTVWKVECGIPSGFPLTVICNSIF NEILIRYSFKAILRSQKIPDMIPVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKDFL ATLHITITDGKDKTSPFLQFRRLEDCDFLKRGFKNRGLYWDAPEDKESLWAQLHYVNANN LEKHEAYKTNLVTVLRELFMWDKNECAALRRKALQRISWLEPSDLQTVAQIEAWYAGNRG KYLPDSSDSISMLLQKENLGPLLAPQGEQRGIEITPTVRTANLAHESFKTAKNDEVWILC QTMYPHGRLPEGVIAVNWPVGTGRGGLPTSTWMDENLKRPTSELRKKLRCALDNGKRLVF ATREGILPCNIMAVLLLALEKKMKPEESNVILSAAILQCKSLGYLPRECDFAF NT seq 5562 nt NT seq  +upstreamnt  +downstreamnt atggcctgtgttactttggatcgagatcaacagagctatgctctgatcccgtacgttaca gacaaacatgttacatggcttctgaagtgttatgttcgagtgaacacttttgatcctgat ttcccggttaccaagcgtcttgagcgcctaagacagcaccattttgatctgctgtgcttg ggttatggggcatttgttatgcataggaatgccatggcacatgtgccacgcacagtggag actgctgattttattttcgaagattatcatcagtttctctgtgatctggtgacaggaaat gctggaatcacccgccttagaaaatacataaatgtttgctatggtacttacttggacatg gtccttgagtttagtgcatgcacacttgatgatgaaggggacgaagatttcgagctacaa ggcctcaaaagttgtttacacagcttggctaattacattccatccaccctggatagggcc atttcatggtcaactaacaaggttattgatggtattcgagcgcgctttgaagaggtggtt gctgaatggtgtcctatggcaatgcaggcctgttcctggatttctaatatctgggataaa gttaccgtatgggtacaggaatccatagaggcaatgcgctggtttttaaaaggagctcgt gaattgttttattatggagtgtccattttgacggccagctgtgttattggcattgtggaa aaaatattggttgccacaaatttgttggcccccaatcgtggacttgtcgaagcttttttg tcaagtgctgctctgactggggcatttatgtcgtttaagaagaaggaggacccaacgcca atgataacaatgatttcagttcttgctggagtggtttcagctgctgttactgccatgttt ggcgcgccctgcgttgctgtgttacaaggtccagttgagttgttagaaagcgctgctact gcgcttggaattttctgtgagacaacattgttgtctatgggaaaaacctgccaagcagtg aaccaaattagtacatgcgctggaaacctgaaggcaatggcaggaaaactcttcggaatt ttacaagatttcatttggaaggtatttggaatggaatctagatttttgcgtgatgcatcc ctgatgttcgaggaagatgtcgaccagtggctgaaagatattgcagaatgtcaagattcg tatttggcaaaagcttattcttcccaggatgacatcatgaaaatgcaagccctggttaag aaagggcatgatatgcgttccaaagtgctaaaagtcaccagccgcatttccccagtttta gcaaatacagttacacgaggcgtcgagtcggtggaaaaactgctacgagagtccttgtgt cagggagtgaaagcaacgaggaggattccttttgttgtgtatgcttacggagaatctaga actggtaagacgttggttgtagataaactcatcacagatttccagaaccattttggtctt gggaaagacactgtttacagtagaaatcccattgatcaatactggagcggataccgaaga caacctattgtgagtattgatgattttggagctgtcacttgcgatccttctatggaagct cagatgataccattggtatcgagtgcacctttgcctctaactatggctgccattgaggaa aaaggaatgatgtttgactcaaagttcatcttttgctcttccaatttgttggaagcaagc cctgaaagcaaactgcaagataaccaagctttccgcaataggaggcatgttttgataaat gttaagctggatgctaccaagccgtacaacatgcatgacttcacggaaaaccagatctac cagattttgaaatacgacaacggcacgtatgttgtgcaggccgagttccatacctatggt gacctgttctcatactgtctggagagatgggagaagcacgaaaatgagcaaacagcaaat ctcgccaacagcttggaagagccaaaggcagacggagacttcataaacttcgagttcttg atgcacacacttattagacggaatcttccggacaagatggttgatgttatcttcgaggag agaaccaaaactcagtttgtgccccttgttacttacaggcgaaaaggaaaactctggagc tattacgttagcccagaaggaagaattcaaacaatagctgaatcgcttgaggatccgaag gcccttgcaaaggaagtagagtcaatggattttctgcggaggatgtatgagatgttgagg tacaatgaggaaacagacttgattgtgaagatgcatcttaaagacttagctagagaggac ttctatgacgacaaaatgaattatatcggcacctttggaaatgaaagggaacacgcgtta atgcgatccacttttgattctatggcaggctggcacaaagttgtattgtgcggaatggga gttctccaagatcgatgttcctctgttaagtggtatgatggcataattgagaaaattcag gataccatgtacacgttgtatagcaaggaaataagcgagtggccaatgggacttaagatc gttgtcggagttttactcacatcactttttggagctggactttggaagttgatgggagtt ctccagggaacaggtagcgtagctgccttgggagtgactgctgccacccactttggccat gaacatggaggagctagagccactgcacaaagtaggaaacctaatcggtatgatgtggcg cagtacaagtacagaaacgttcccatcaccaagcgagcttgggcacagggagacatgcct attagccatgcaacagcaatgatttttgatcgcatcaaggcaagctggcaatacgggcac acggaagctcagattgcaatggtgcctggaagacgcttcatcggttattctcatttcttt cgtacaatagaacgtccaattcaagtgcggatacatacagctagtggttctcagcccttg ttttacaagcctgagaatatgcattattttgaggaaagtgagctttgcgtgtacgaagat agtgctctccaggatatagcgcatacgtgttgggacctgtttgagtgggattttgaacag attcagcaagattctttcaaagcgttgtttctttcatgtaagaggaagagcagcacggga caaccaaatccagagtgggctgatatagatgtgagaacacgctcagaatcacttatggtg caggaaggagagtactcacgtgttctcccacgctatttggagtacacggcacctacagtt aaccacgattgtggttccttgattgtggctgaagtgaacaagacgttcaagattattggt gttcatgtagctggctctggcggtaccaaaggatatgcttgtttgttgcccccacttgtt aagaaagttcaagcacaacatgctcagaagtattttgactacctgccatttgcggagaaa gaaggtgagggcatagaaaaggttgctatgttacagaaaggcattcacattcccttaccc acaaaaacagctctggttgagacacctgttgagtggcacctggacacgccctgtgataag taccccagcatcctgtctagtgaagatcctcgtttggaggtgtccggccaaaccgactat gatccattcaaggctggcattttaaaatacaaagatcctatgggtgttttggacaacaag ttgctggtggaggtttgtgaggagattgagcagagctggctggattgtaaagaagaggga gaaacgtttgaggaagttagtttggaacaagccatcaatggagtcaaagatgttgactat atggatagaattccactcgcaacatcagaaggatttcctcatatcttgtcccgagcacat ggtgagaaaggcaaaatacgttttgtggaaggtgattctgaggaaatgatgctgattcca ggaaccagtgtgtcagaagctcttgacattatggaggcccagctggagaatgaagttcca actctaattggaatagagtgccccaaagatgagaaactgccacatcggaagatatttgag aagcctaagacacgttgtttttctattttaccaatggaatacaatttgttggtgcgtaga aggttcttgacttttgtccgctttattatgcgaaacaggaatgtgctaccatgtcaggtt gggattaatccttatggcatggagtggacggatctagcaatgcgtttaaagagaaagggc aacaacatcttgtgctgtgattacagtagtttcgatgggttgctttccaagcaagtaatg aaggctatgtctgacatgataaacaatttctgtggtggtagtgagagttccaaacgaaag cgagagcacttgctaatggcttgttgttctcgatatgccatttgtaaaaacacagtatgg aaggttgagtgtggtattccatctggttttcctctcaccgtgatatgcaattccattttc aatgagattttaattagatacagcttcaaggcaatcttgcgctctcagaagatacccgat atgattccggtgagtttcgatgaatatgtgagcatggttgtctatggagatgacaatttg ctgtcggtgagtgaggtcattaagccctattttgatggaaaacgattgaaggatttttta gccactctccatatcactatcactgacgggaaggacaaaacaagcccatttctacaattt cggcgtttggaggactgtgactttctcaagagaggttttaaaaaccgaggtttgtattgg gatgctccagaggataaggagagtttgtgggcacagcttcattatgtgaatgccaacaat ctcgaaaagcatgaagcctataagacaaatctcgtgactgttttacgcgagctgttcatg tgggacaagaatgagtgtgctgcgctcagaagaaaggcacttcagagaatttcatggttg gagccaagtgatttacaaacggttgctcagatagaagcgtggtatgctggaaatagagga aagtatctaccagattcgagtgatagcataagcatgcttctacagaaggagaacttggga cctttattggcaccccaaggagagcagaggggaatagaaatcacacccacggtgagaact gccaatttggcacatgaaagctttaaaacagctaagaatgatgaagtgtggattttgtgt caaacaatgtatccacatgggcgtttaccagagggagttattgctgttaattggccagtt gggacaggaagaggtggcttgccaacgtcaacttggatggatgagaacctcaagcgtccc acatctgagcttcggaaaaaactgaggtgtgctttggacaatggcaagagattggtcttt gctacacgagaaggaattctgccgtgtaacattatggctgtgttacttttggcacttgaa aagaagatgaagccagaggagagtaatgttatcttgtccgcagctattctacaatgtaaa tcattaggttatttgcctagagagtgtgattttgctttttaa

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