Viruses: 7559134
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Entry
7559134 CDS
T40000
Symbol
RCVMV_gp1
Name
(RefSeq) Red clover vein mosaic virus; RNA-dependent RNA polymerase
KO
K26628
Betaflexiviridae RNA replication polyprotein
Virus
590403
Red clover vein mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
RdRP_2
Viral_helicase1
Peptidase_C23
2OG-FeII_Oxy_2
2OG-FeII_Oxy
THSD1_D2
AAA_30
Motif
Other DBs
NCBI-GeneID:
7559134
NCBI-ProteinID:
YP_002647021
RS:
NC_012210
UniProt:
C0L9E8
LinkDB
All DBs
Position
NC_012210:72..5870
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AA seq
1932 aa
AA seq
DB search
MALTYRSPIEEVLTSYTTAEQSEIASTSMRTYKEIEIANHQWFNFHLSPVAKQRFFNAGI
YLSPFSVLPHSHPCCKTLENYLLYRVLPSYLDATFFFVGIKECKIKALKAMNKKLEFCEL
INRYVTSADQWRYPTDTFVVNGGAPAQSISTLRSIFGSGDADSTKTLIPKVLTVNRRNVF
LHDELHYWTPQELGGFLDATGVNKMLATVVIPPELLIGAKGSMNKWCYEFEITGETLRFY
PDGVAAEGYEQPMSCTYLLKTKQIITRGGNIYSVDLLCSKFSHHLIAFTRGDLKTKTYHV
FSDFEAVSANFLKPILGQEYSCFPISYTNLSKIYRYLCTLSKPDVMSAVAKLGQIVPEPT
AFELKFTMEFAKLVIKVGTKNSLILPDLWEDFKVFSLSFLPAVVSKQFSCFVKSTLDDFV
SNLCPLRFDVQLEVVDCRNIIADLVDKGIAIIDGLDPEPLPRPSIDPTEPQVSLDDRESA
LYFNAHVETYWEVFEVDEFIKLLGLWLSNLFSFPEICVLEFDGLERFAHQHFGSETINNL
IRTQDRFHFWDSVFIISAKLSKQRSGITSLPQGRFLTYHSVATLQPLSKEPTVAIVGELP
IEEVKREDENFALLEYPPLSCACGLSIPCSEALSLNFDFITFRDALRNRVAAYFSRDGSS
YSYNGGSHASQGWPVELDDLLLVHGENPVAFDSVLVQRYNQGGGIGFHSDNESIFQEGGS
ICTFQFGGSCIFSFSCSLGVHHNVLKGDCKFTMPAGFQETHKHKVSECTEGRVSFTFRRL
RIRESGLLEEIKPDGRGPELIEELKMEGDSTSSEVIIFDVEITAIDLTPEHLISIEVPGD
GNCFWHSLGYFLGVEGPELKRIARKRFKNELGLCNDDFPNAQLEGDNFAELEVVCACSKL
FNIEFIVCSLEGRESMRFMPPGEINICVLLGFGHAHYKPMVPRNDCVPRAIAEALGRSLR
EVFGVLSRKENSSLYALLGGSGGVDIDDLEDFFNLFDIRAYVDLDGKWYSLNPKGHLERH
FNLNDGHMTFKPKDGVELFKTKKACVLQKGKNKKLPEDCALKLRLSGTVLPYNWDARRAN
ALLGSMHVARTGVLSSELFNGVALRTVQGPSKQENQQREVCAILGTFGAGKSSLLSRLFP
RLKGCAIHFVSPRKGLATDMRGLMSSALNCTGPETKMKKAIRKANWEVSTFEIFLLNIDR
IKDGTTVFLDEIQLFPPGYLDTVCGLLSDGCEIFVIGDPCQSDYDSEKDRSILTELGSDV
DRLLLGKDYKYVSTSRRFGNARFEGRLPCFFLTGTLTFDEPFVCQNGLNGALEVDRKFRE
VVLVSSFMEKHVIQAIYGESQEVLTFGESTGRTFNFGTLLISESSILTSEKRWLTALSRF
RKNICFLNALESSFDEIAKRFSGKVLGSFLSKQAKVDDLLKMLPGNPKFVESFVQPIGKS
FGVFEEKLMGDPWLKSELFLGQDEEMADEQMAEFIEQQSWFKTHLPKCERETLRARWVHR
IMAKEDREFHFKDLRTEQFADDHGKNRGARLTNAAERFESIYPRHKASDTLTFLMAVKKR
LRFSKPHVECAKIKQADMFGPFLLKEFLKKVPLPNRGRPELMAEAVRDFELKKISKSGAT
IQNHAGRSCKDWLIDLGLVFSKSQLCTKWGNRFIKAKAAQTIVCFQHAVLCRFAPYMRYI
EKNPSEALPRNLYIHSGKSLEELNEWVKVAKFEGICTESDYEAFDASQDHYIMAFEVSLM
RYLGLPVDLIEDYKFIKTHLGCKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGSE
YICFAGDDMCASKRLRVSDKFEGFLSKLKLKAKVDFVASPTFCGWNLVNFGIYKLPQLVF
ERMCIAKERNILADCIDNYAIEVSYAYKLGELATNHMDEEEMEAFYNCVKVIIKNMHIMK
SDVANIFRNNPC
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggctttgacatacagaagtccaattgaggaggtgttgacttcttacacaaccgcggaa
cagagcgagattgcatcgacttccatgcgtacctacaaagagatcgagattgctaatcat
cagtggttcaattttcacttgagcccagttgctaagcagaggttcttcaatgcaggtatt
tatcttagtccgttttccgttcttccgcattcccacccttgttgcaagactctggagaat
tatctcttgtatagggtgttacctagttatctagacgctacctttttcttcgtgggtata
aaagaatgtaaaattaaagcgttaaaagcgatgaataagaaattggaattttgtgaactg
ataaatcgttatgtgaccagtgctgatcaatggaggtatccaactgatacctttgtggtc
aatggtggggcacctgctcagtccatctcgactctaaggagtattttcgggagtggggat
gccgatagcacaaaaactttaatcccaaaagtcctgacagtcaatcggcggaacgtattt
ctccatgatgagttgcattattggacaccccaggaattaggaggcttcttggatgctact
ggggtgaataaaatgcttgctaccgttgtaattccgccagagctgcttataggagctaag
ggttcaatgaacaagtggtgctacgaatttgaaatcacgggggaaaccttgaggttttat
ccagatggtgtagcggctgaagggtacgagcaaccaatgagttgcacttacttgctgaag
accaagcaaataattacgaggggtggtaatatctatagtgtggatctcttgtgtagcaaa
ttctcccaccatcttattgctttcacaaggggtgatttaaaaacaaaaacttaccacgtg
ttttctgattttgaagctgtaagtgcaaacttcctgaaaccaatactcggtcaagaatac
tcatgctttcccatttcgtacaccaacttgagtaagatttaccggtatctgtgtacttta
agcaaacccgatgttatgtcagcggtggccaagctaggacaaatagtgcctgagccaact
gcttttgaacttaaattcaccatggagtttgcgaaattggttataaaggttggtaccaaa
aatagcctgatcttgccggacctgtgggaagatttcaaagttttttcactaagtttttta
cctgctgttgttagtaagcagtttagttgttttgtcaagagtactttagacgatttcgtg
agtaacctgtgtcctttgcgttttgatgtgcagttagaagtagtcgattgtaggaatata
atagctgatttagtagacaagggcatagcaataattgatggtttggatcctgagccattg
cctagacctagtattgatcccactgagccgcaggtatcactagatgatagagagagtgct
ctctatttcaatgctcatgtggagacttactgggaagtttttgaggtggatgaatttatc
aaactattaggactctggctctccaacctattttctttcccggagatttgcgtgcttgag
tttgatggtcttgaacgttttgcacaccaacattttggttctgagactattaacaacctt
atccgaacccaagatagatttcatttctgggattcagtttttatcataagtgctaagttg
agtaaacaacggtctggtattacttcactgcctcagggtcggtttttgacttatcactct
gttgcgactctgcagccattgtcaaaggagccaacagtggccattgttggagaactacct
attgaagaagtgaagagggaagatgaaaatttcgcactcttagagtacccacccctgtct
tgtgcctgcggcctctcaatcccctgctcggaggcactgtccctaaactttgattttatc
acattccgtgatgcgcttagaaatagggtggctgcgtacttttccagagatggctctagt
tactcgtataatggcggttctcatgcgagtcaaggttggccagtggagttagatgacctt
cttttggttcatggtgaaaatcctgttgcctttgatagtgtgctcgtgcaacgttataac
caaggtggtgggataggctttcattctgataatgaatctatattccaggaagggggttcc
atttgcactttccagtttggtggaagttgtatctttagcttctcttgctcgcttggagta
catcacaatgtgctgaagggagattgtaaatttaccatgcctgctggttttcaagaaacg
cataagcacaaagtgtcagaatgcactgaaggcagggtctcttttactttccggagactc
cgaattagagaaagtggattgttagaggaaatcaagccagatgggaggggtccggagtta
attgaagaattgaaaatggagggcgatagtacatcaagtgaggttattatatttgacgtg
gagataacggccattgatcttacccccgaacatcttatttccattgaagtgcctggtgat
ggaaattgcttctggcatagcttaggctatttcctgggtgtagaagggcctgagctcaaa
aggattgccaggaaaagattcaaaaatgaacttggtctctgtaatgacgattttccaaac
gcccagctagaaggtgacaactttgcagagttagaggttgtttgtgcttgctcaaaatta
ttcaacattgagtttatcgtgtgcagcttagagggtcgtgagtcaatgcgattcatgccg
ccgggagagataaacatttgtgtgctactggggtttggacatgctcattacaaaccaatg
gtacctcggaacgactgcgtgcctagggctattgcagaagctctcgggaggtctttaagg
gaagtctttggcgtgctttcccgtaaggaaaatagtagtctctatgctctcctgggtggt
tccggtggtgttgacatagatgacctggaggatttcttcaatcttttcgacatacgcgct
tatgtggatcttgatggcaagtggtactcgctcaaccccaaggggcacttagagaggcac
tttaatctaaatgatgggcatatgacttttaagccaaaggatggagtggaactgtttaag
accaagaaggcttgcgtattgcagaaggggaaaaataaaaagctacctgaagattgcgca
ctaaaattaagattgagtggtactgttttgccatataattgggatgctcgcagagccaac
gctttgctgggtagcatgcatgtcgccaggactggggttcttagttcggagctttttaat
ggggttgcactcagaactgtgcaaggtccaagcaagcaagaaaaccaacagagagaagtt
tgtgcgattctgggtacttttggagctgggaagagcagtttactctcaaggttatttccc
agattaaaagggtgtgctattcactttgtctcaccaaggaagggtttagccaccgatatg
cggggtttgatgagttccgctctcaattgcactggtcccgaaacaaagatgaagaaggct
attagaaaagcaaattgggaggttagtacttttgagattttcctcttgaatatagatagg
ataaaggatgggacgacagtttttctagatgagattcagcttttccccccaggatactta
gacactgtatgtggccttttgagtgacggttgtgaaatctttgtgattggtgatccctgt
caaagtgattatgactcagagaaagatagatcaatcctgactgaacttggtagtgatgtt
gataggttactcttaggcaaggattataagtatgtatccaccagcaggcgctttgggaat
gcccgtttcgaaggtaggttgccctgcttttttttgacgggaacattgacttttgatgag
ccatttgtttgccagaatggtttgaatggtgctctagaggtggataggaagtttcgagag
gtggtactcgtctcaagctttatggagaaacatgttattcaggccatctatggggaatca
caggaagtacttacatttggcgaaagtactgggcgtactttcaactttggtacactgctc
ataagtgaatcatcaatcttgacttcagagaagaggtggttgacggctctatcaaggttt
cggaagaacatttgcttcttgaatgcactcgagtccagtttcgatgaaattgccaagaga
tttagtgggaaagtgctggggtcgtttttgagtaaacaggctaaagtggatgatcttctt
aaaatgttaccaggtaatccgaaattcgttgagagttttgttcagcccattggaaagagt
tttggggttttcgaagagaaattgatgggggatccttggcttaagagtgaactctttcta
ggtcaagatgaagagatggcagatgagcaaatggcagagttcatagagcagcaatcctgg
ttcaagacccacctcccaaagtgtgaacgtgagacgctacgcgccagatgggtgcaccgg
ataatggcaaaggaagatagagaattccactttaaggacctaagaacagagcaatttgct
gatgatcatgggaaaaatagaggcgctcggctcaccaacgccgctgaacgttttgaaagc
atatatcccaggcataaagcttccgacacactcaccttcttaatggcggtgaagaaaagg
cttaggttctcgaaaccacatgtcgagtgcgcaaaaatcaagcaagcagatatgttcggg
cccttcctgttgaaagagttcttaaagaaggtaccactgcccaatagaggccgccctgag
ttaatggcagaagcagtaagggatttcgagctaaagaagattagcaagagtggggccact
attcagaatcacgcaggtcgaagttgcaaagattggctaatcgatctaggtttggttttt
agtaagtctcaactctgcaccaaatggggtaataggttcatcaaagcgaaggctgcacag
actatagtttgtttccaacatgctgtactttgtaggttcgccccttacatgcgttacatc
gaaaaaaatcctagcgaggcattaccaagaaacttgtatatccactctggcaagagtctg
gaggaacttaatgaatgggtaaaggtcgccaaattcgagggtatttgcactgaatcggat
tatgaggcttttgatgcgtctcaagatcattatatcatggcgtttgaggttagcttaatg
cgataccttggcttaccagtggacctcatagaggattacaagttcatcaaaactcatctc
ggttgcaagttaggaaacttcgctatcatgcgcttctccggagaagctagcactttcctg
ttcaataccatggcgaacatgcttttcacatttctcaggtatgatttgaatggatcggaa
tacatatgcttcgcaggtgatgacatgtgtgcctctaaaagattgcgcgtgagtgataaa
ttcgagggtttcctgagcaaactcaagttgaaggcaaaggtggattttgtggctagcccc
actttttgtggttggaacttggttaatttcggcatatacaagcttccacagctagttttc
gagcgtatgtgtatagcaaaagagagaaacattctagctgattgtattgataattatgct
attgaagtgtcttatgcctacaagttaggggaacttgccacaaatcacatggatgaggaa
gagatggaagctttctacaactgcgtgaaggtcattatcaagaatatgcacatcatgaaa
tctgacgtagctaatatttttagaaataatccctgttag
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