KEGG   Viruses: 7559134
Entry
7559134           CDS       T40000                                 
Symbol
RCVMV_gp1
Name
(RefSeq) Red clover vein mosaic virus; RNA-dependent RNA polymerase
  KO
K26628  Betaflexiviridae RNA replication polyprotein
Virus
590403  Red clover vein mosaic virus
SSDB
Motif
Pfam: Vmethyltransf RdRP_2 Viral_helicase1 Peptidase_C23 2OG-FeII_Oxy_2 2OG-FeII_Oxy THSD1_D2 AAA_30
Other DBs
NCBI-GeneID: 7559134
NCBI-ProteinID: YP_002647021
RS: NC_012210
UniProt: C0L9E8
LinkDB
Position
NC_012210:72..5870
AA seq 1932 aa
MALTYRSPIEEVLTSYTTAEQSEIASTSMRTYKEIEIANHQWFNFHLSPVAKQRFFNAGI
YLSPFSVLPHSHPCCKTLENYLLYRVLPSYLDATFFFVGIKECKIKALKAMNKKLEFCEL
INRYVTSADQWRYPTDTFVVNGGAPAQSISTLRSIFGSGDADSTKTLIPKVLTVNRRNVF
LHDELHYWTPQELGGFLDATGVNKMLATVVIPPELLIGAKGSMNKWCYEFEITGETLRFY
PDGVAAEGYEQPMSCTYLLKTKQIITRGGNIYSVDLLCSKFSHHLIAFTRGDLKTKTYHV
FSDFEAVSANFLKPILGQEYSCFPISYTNLSKIYRYLCTLSKPDVMSAVAKLGQIVPEPT
AFELKFTMEFAKLVIKVGTKNSLILPDLWEDFKVFSLSFLPAVVSKQFSCFVKSTLDDFV
SNLCPLRFDVQLEVVDCRNIIADLVDKGIAIIDGLDPEPLPRPSIDPTEPQVSLDDRESA
LYFNAHVETYWEVFEVDEFIKLLGLWLSNLFSFPEICVLEFDGLERFAHQHFGSETINNL
IRTQDRFHFWDSVFIISAKLSKQRSGITSLPQGRFLTYHSVATLQPLSKEPTVAIVGELP
IEEVKREDENFALLEYPPLSCACGLSIPCSEALSLNFDFITFRDALRNRVAAYFSRDGSS
YSYNGGSHASQGWPVELDDLLLVHGENPVAFDSVLVQRYNQGGGIGFHSDNESIFQEGGS
ICTFQFGGSCIFSFSCSLGVHHNVLKGDCKFTMPAGFQETHKHKVSECTEGRVSFTFRRL
RIRESGLLEEIKPDGRGPELIEELKMEGDSTSSEVIIFDVEITAIDLTPEHLISIEVPGD
GNCFWHSLGYFLGVEGPELKRIARKRFKNELGLCNDDFPNAQLEGDNFAELEVVCACSKL
FNIEFIVCSLEGRESMRFMPPGEINICVLLGFGHAHYKPMVPRNDCVPRAIAEALGRSLR
EVFGVLSRKENSSLYALLGGSGGVDIDDLEDFFNLFDIRAYVDLDGKWYSLNPKGHLERH
FNLNDGHMTFKPKDGVELFKTKKACVLQKGKNKKLPEDCALKLRLSGTVLPYNWDARRAN
ALLGSMHVARTGVLSSELFNGVALRTVQGPSKQENQQREVCAILGTFGAGKSSLLSRLFP
RLKGCAIHFVSPRKGLATDMRGLMSSALNCTGPETKMKKAIRKANWEVSTFEIFLLNIDR
IKDGTTVFLDEIQLFPPGYLDTVCGLLSDGCEIFVIGDPCQSDYDSEKDRSILTELGSDV
DRLLLGKDYKYVSTSRRFGNARFEGRLPCFFLTGTLTFDEPFVCQNGLNGALEVDRKFRE
VVLVSSFMEKHVIQAIYGESQEVLTFGESTGRTFNFGTLLISESSILTSEKRWLTALSRF
RKNICFLNALESSFDEIAKRFSGKVLGSFLSKQAKVDDLLKMLPGNPKFVESFVQPIGKS
FGVFEEKLMGDPWLKSELFLGQDEEMADEQMAEFIEQQSWFKTHLPKCERETLRARWVHR
IMAKEDREFHFKDLRTEQFADDHGKNRGARLTNAAERFESIYPRHKASDTLTFLMAVKKR
LRFSKPHVECAKIKQADMFGPFLLKEFLKKVPLPNRGRPELMAEAVRDFELKKISKSGAT
IQNHAGRSCKDWLIDLGLVFSKSQLCTKWGNRFIKAKAAQTIVCFQHAVLCRFAPYMRYI
EKNPSEALPRNLYIHSGKSLEELNEWVKVAKFEGICTESDYEAFDASQDHYIMAFEVSLM
RYLGLPVDLIEDYKFIKTHLGCKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGSE
YICFAGDDMCASKRLRVSDKFEGFLSKLKLKAKVDFVASPTFCGWNLVNFGIYKLPQLVF
ERMCIAKERNILADCIDNYAIEVSYAYKLGELATNHMDEEEMEAFYNCVKVIIKNMHIMK
SDVANIFRNNPC
NT seq 5799 nt   +upstreamnt  +downstreamnt
atggctttgacatacagaagtccaattgaggaggtgttgacttcttacacaaccgcggaa
cagagcgagattgcatcgacttccatgcgtacctacaaagagatcgagattgctaatcat
cagtggttcaattttcacttgagcccagttgctaagcagaggttcttcaatgcaggtatt
tatcttagtccgttttccgttcttccgcattcccacccttgttgcaagactctggagaat
tatctcttgtatagggtgttacctagttatctagacgctacctttttcttcgtgggtata
aaagaatgtaaaattaaagcgttaaaagcgatgaataagaaattggaattttgtgaactg
ataaatcgttatgtgaccagtgctgatcaatggaggtatccaactgatacctttgtggtc
aatggtggggcacctgctcagtccatctcgactctaaggagtattttcgggagtggggat
gccgatagcacaaaaactttaatcccaaaagtcctgacagtcaatcggcggaacgtattt
ctccatgatgagttgcattattggacaccccaggaattaggaggcttcttggatgctact
ggggtgaataaaatgcttgctaccgttgtaattccgccagagctgcttataggagctaag
ggttcaatgaacaagtggtgctacgaatttgaaatcacgggggaaaccttgaggttttat
ccagatggtgtagcggctgaagggtacgagcaaccaatgagttgcacttacttgctgaag
accaagcaaataattacgaggggtggtaatatctatagtgtggatctcttgtgtagcaaa
ttctcccaccatcttattgctttcacaaggggtgatttaaaaacaaaaacttaccacgtg
ttttctgattttgaagctgtaagtgcaaacttcctgaaaccaatactcggtcaagaatac
tcatgctttcccatttcgtacaccaacttgagtaagatttaccggtatctgtgtacttta
agcaaacccgatgttatgtcagcggtggccaagctaggacaaatagtgcctgagccaact
gcttttgaacttaaattcaccatggagtttgcgaaattggttataaaggttggtaccaaa
aatagcctgatcttgccggacctgtgggaagatttcaaagttttttcactaagtttttta
cctgctgttgttagtaagcagtttagttgttttgtcaagagtactttagacgatttcgtg
agtaacctgtgtcctttgcgttttgatgtgcagttagaagtagtcgattgtaggaatata
atagctgatttagtagacaagggcatagcaataattgatggtttggatcctgagccattg
cctagacctagtattgatcccactgagccgcaggtatcactagatgatagagagagtgct
ctctatttcaatgctcatgtggagacttactgggaagtttttgaggtggatgaatttatc
aaactattaggactctggctctccaacctattttctttcccggagatttgcgtgcttgag
tttgatggtcttgaacgttttgcacaccaacattttggttctgagactattaacaacctt
atccgaacccaagatagatttcatttctgggattcagtttttatcataagtgctaagttg
agtaaacaacggtctggtattacttcactgcctcagggtcggtttttgacttatcactct
gttgcgactctgcagccattgtcaaaggagccaacagtggccattgttggagaactacct
attgaagaagtgaagagggaagatgaaaatttcgcactcttagagtacccacccctgtct
tgtgcctgcggcctctcaatcccctgctcggaggcactgtccctaaactttgattttatc
acattccgtgatgcgcttagaaatagggtggctgcgtacttttccagagatggctctagt
tactcgtataatggcggttctcatgcgagtcaaggttggccagtggagttagatgacctt
cttttggttcatggtgaaaatcctgttgcctttgatagtgtgctcgtgcaacgttataac
caaggtggtgggataggctttcattctgataatgaatctatattccaggaagggggttcc
atttgcactttccagtttggtggaagttgtatctttagcttctcttgctcgcttggagta
catcacaatgtgctgaagggagattgtaaatttaccatgcctgctggttttcaagaaacg
cataagcacaaagtgtcagaatgcactgaaggcagggtctcttttactttccggagactc
cgaattagagaaagtggattgttagaggaaatcaagccagatgggaggggtccggagtta
attgaagaattgaaaatggagggcgatagtacatcaagtgaggttattatatttgacgtg
gagataacggccattgatcttacccccgaacatcttatttccattgaagtgcctggtgat
ggaaattgcttctggcatagcttaggctatttcctgggtgtagaagggcctgagctcaaa
aggattgccaggaaaagattcaaaaatgaacttggtctctgtaatgacgattttccaaac
gcccagctagaaggtgacaactttgcagagttagaggttgtttgtgcttgctcaaaatta
ttcaacattgagtttatcgtgtgcagcttagagggtcgtgagtcaatgcgattcatgccg
ccgggagagataaacatttgtgtgctactggggtttggacatgctcattacaaaccaatg
gtacctcggaacgactgcgtgcctagggctattgcagaagctctcgggaggtctttaagg
gaagtctttggcgtgctttcccgtaaggaaaatagtagtctctatgctctcctgggtggt
tccggtggtgttgacatagatgacctggaggatttcttcaatcttttcgacatacgcgct
tatgtggatcttgatggcaagtggtactcgctcaaccccaaggggcacttagagaggcac
tttaatctaaatgatgggcatatgacttttaagccaaaggatggagtggaactgtttaag
accaagaaggcttgcgtattgcagaaggggaaaaataaaaagctacctgaagattgcgca
ctaaaattaagattgagtggtactgttttgccatataattgggatgctcgcagagccaac
gctttgctgggtagcatgcatgtcgccaggactggggttcttagttcggagctttttaat
ggggttgcactcagaactgtgcaaggtccaagcaagcaagaaaaccaacagagagaagtt
tgtgcgattctgggtacttttggagctgggaagagcagtttactctcaaggttatttccc
agattaaaagggtgtgctattcactttgtctcaccaaggaagggtttagccaccgatatg
cggggtttgatgagttccgctctcaattgcactggtcccgaaacaaagatgaagaaggct
attagaaaagcaaattgggaggttagtacttttgagattttcctcttgaatatagatagg
ataaaggatgggacgacagtttttctagatgagattcagcttttccccccaggatactta
gacactgtatgtggccttttgagtgacggttgtgaaatctttgtgattggtgatccctgt
caaagtgattatgactcagagaaagatagatcaatcctgactgaacttggtagtgatgtt
gataggttactcttaggcaaggattataagtatgtatccaccagcaggcgctttgggaat
gcccgtttcgaaggtaggttgccctgcttttttttgacgggaacattgacttttgatgag
ccatttgtttgccagaatggtttgaatggtgctctagaggtggataggaagtttcgagag
gtggtactcgtctcaagctttatggagaaacatgttattcaggccatctatggggaatca
caggaagtacttacatttggcgaaagtactgggcgtactttcaactttggtacactgctc
ataagtgaatcatcaatcttgacttcagagaagaggtggttgacggctctatcaaggttt
cggaagaacatttgcttcttgaatgcactcgagtccagtttcgatgaaattgccaagaga
tttagtgggaaagtgctggggtcgtttttgagtaaacaggctaaagtggatgatcttctt
aaaatgttaccaggtaatccgaaattcgttgagagttttgttcagcccattggaaagagt
tttggggttttcgaagagaaattgatgggggatccttggcttaagagtgaactctttcta
ggtcaagatgaagagatggcagatgagcaaatggcagagttcatagagcagcaatcctgg
ttcaagacccacctcccaaagtgtgaacgtgagacgctacgcgccagatgggtgcaccgg
ataatggcaaaggaagatagagaattccactttaaggacctaagaacagagcaatttgct
gatgatcatgggaaaaatagaggcgctcggctcaccaacgccgctgaacgttttgaaagc
atatatcccaggcataaagcttccgacacactcaccttcttaatggcggtgaagaaaagg
cttaggttctcgaaaccacatgtcgagtgcgcaaaaatcaagcaagcagatatgttcggg
cccttcctgttgaaagagttcttaaagaaggtaccactgcccaatagaggccgccctgag
ttaatggcagaagcagtaagggatttcgagctaaagaagattagcaagagtggggccact
attcagaatcacgcaggtcgaagttgcaaagattggctaatcgatctaggtttggttttt
agtaagtctcaactctgcaccaaatggggtaataggttcatcaaagcgaaggctgcacag
actatagtttgtttccaacatgctgtactttgtaggttcgccccttacatgcgttacatc
gaaaaaaatcctagcgaggcattaccaagaaacttgtatatccactctggcaagagtctg
gaggaacttaatgaatgggtaaaggtcgccaaattcgagggtatttgcactgaatcggat
tatgaggcttttgatgcgtctcaagatcattatatcatggcgtttgaggttagcttaatg
cgataccttggcttaccagtggacctcatagaggattacaagttcatcaaaactcatctc
ggttgcaagttaggaaacttcgctatcatgcgcttctccggagaagctagcactttcctg
ttcaataccatggcgaacatgcttttcacatttctcaggtatgatttgaatggatcggaa
tacatatgcttcgcaggtgatgacatgtgtgcctctaaaagattgcgcgtgagtgataaa
ttcgagggtttcctgagcaaactcaagttgaaggcaaaggtggattttgtggctagcccc
actttttgtggttggaacttggttaatttcggcatatacaagcttccacagctagttttc
gagcgtatgtgtatagcaaaagagagaaacattctagctgattgtattgataattatgct
attgaagtgtcttatgcctacaagttaggggaacttgccacaaatcacatggatgaggaa
gagatggaagctttctacaactgcgtgaaggtcattatcaagaatatgcacatcatgaaa
tctgacgtagctaatatttttagaaataatccctgttag

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