Viruses: 80537675 Help Entry 80537675          CDS       T40000                                  Symbol QKP96_gp1 Name (RefSeq) Rocahepevirus ratti; polyprotein   KO K27799   Hepeviridae non-structural polyprotein pORF1 Virus 1678145  Rocahepevirus ratti Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  RdRP_2 Viral_helicase1 Vmethyltransf Macro RdRP_4 Peptidase_C41 UvrD_C_2 RdRP_1 Motif Other DBs NCBI-GeneID:  80537675 NCBI-ProteinID:  YP_010799312 RS:  NC_076623 LinkDB All DBs Position NC_076623:42..4907 Genome browser AA seq 1621 aa AA seqDB search MEAHQYLRAAGVTTALEAAAVGAAAASLANAYEVPVFVSQRQAELLVSLFSPLQLTFNPQ RVWSHPIQRVIHNYLEGVARAKAGSCLEVGAHPRSVNEHPNVQHRCFLPPVGRDVQRWLS CPRRGAVNNMRRCALTGAQPPDMTFCFSGFHQCRHYAEVGLALYSLHDLPPATVAKVMRQ HGMKQLFAVLHLPPEVMLPVGVYPTPTYVARNIGDRIVVTYTGDTSAGYDHDRAILRKWV KVTRVGGCCALVVERVRAIGCHFLLSITAVNTVTPMPYTPYPNADTIYVRSLFSAGGSPG LLHSVCTSARSTFHAVPASIWDRLMLFGVTLDDDAFCCSRPMTYLRGISFKVVVGTQVAN EGWTTDEFALTAVVVAAYLTICHQRWIRTQGISKGVRRLTFEHAQGFLNRLLKWFGKKIG GKKDDFITGRQLEFYKLCEDWVSAGCYFDPRALCFDKQITCPCKCTKIKAAVKAVREGFK LCAPKACKCIGATFPGLCSCFLTPQTDNKEPELYSPSSEASSIVVHPQPQPAAPIAACST AQGGTVYYPKGLDNFTCKAVARALAIFRATAKKDPNRSPCLDAVAHMFFWASAIWAPATP VVDSAANPFYQASNYTSTASRASGSLYDALAALKEERIRELAKGDLALAEELMEISEPAP RPQLLRFESAVDSGVGSPLTPTLPPFEAQQSAGLPPLPKSPAARVIQTLPDGSQILEGSL FSADCDWLVNASNPDHIPGGGVCGQFHRKFPQAFEQPWLMTQGLTAYTATPRQIIHAVAP DYRSQKRLRTIQQAYYETLSRVGTAAYPLLGTGIYQVPFGESIKAWIENHRPGDKLYLTN DAAQWYEHNRDTSLIGTKSLVITPQQAAIVNIALQKEASGNFGKFVGNAVVAPGLYQYLY TAGVPGSGKSTGIRREDVDVVVVPTQQLRQQWLARGFNVYTQHAAIRQVQGVRVLVDEAP AMPPHILCYIMSVASSVHLLGDPNQIPALDFDHTGLVEAMRPRLDPTEWRMVSHRCPQDV CYLLAADYPGIKTTSKKVRSLDFVTPPPPDAQKIVFTQAAKSMYPAAITVHEAQGSTFNT TALIVTNEARGLIMCSRAHAIVALTRHVEKCYVVDKPGLLKEIGVSDAILGNFYQSGAMQ FYSRPSDVERPEAGPVSGEADLLPASCQFAALHQLSESTGHRPQVVRAVIPPGPPVEQGT LYMPFKLDGREEVVTLALSDTVHCRMAAPTHRLAVLTTLVGRYAKKTRYWAEPVQPVRRS LEKFIPKLPRVVPSTVELGELVKAMQDKGQDGSLVVQLDLADKDCTRITFFQKDCNKFTL DETIAHGKVGQGISAWSKTAVALFGVWFRAIEKAIVDVLPPNVLYGDQYAPETLSSLVES ANFMRVFENDFSEFDSTQNNFSLALECEIMVEVGMPLWLVNLYHLIRSAWVLQAPQEGLK GVWKKHSGEPGTLLWNTVWNMAVIAHCYEFQDLAVAAFKGDDSVVCCSMYTSMARAADLI TGCGLKLKVNFNDVGSFAGLIVCPGVGVVCDVVRFVGRLTEKNWGPGSERTEELREAVVD FLKKIANCTNLVCMLNSMYYGYGQGLIMNLVGLLKTVVEGRASFVELVQPVLKLVNVGKK E NT seq 4866 nt NT seq  +upstreamnt  +downstreamnt atggaggcacatcagtaccttcgtgccgccggggtaactacggctttagaggctgccgct gttggtgccgccgccgcttcattggcgaatgcttatgaggtgccggtttttgtttcccag cgccaggcggagctattagtttctcttttttcccctttacagcttacctttaacccccag cgcgtctggtcgcacccaatacagagagttatccataactatcttgagggtgttgccagg gcaaaggctggcagctgcctggaggtaggcgcgcaccccaggtctgtcaacgaacaccca aatgtacaacaccgctgtttcctcccaccagttggtcgagatgtacagcgttggttgtca tgtccacgtcggggcgcagttaacaacatgcgtcgctgtgcactaacgggcgcacaaccg cccgacatgacattttgtttctccggctttcatcaatgtcgtcattatgcagaagttggg cttgcgctgtattcgctacatgacctgccccctgccaccgtggctaaggtcatgcggcag catggtatgaagcaattgttcgccgtgctgcatctaccacctgaggttatgttacctgtc ggggtttaccccacccctacctatgtcgcccgtaatatcggcgatagaatagttgtcaca tatacaggtgacacttccgcggggtatgatcatgaccgtgctatactgcgcaagtgggtt aaggttacacgggttggtggatgttgtgcccttgtggtggagcgagtccgtgcaattggc tgtcactttttgttaagtataactgccgtcaatacggttacccccatgccttatacaccg taccctaacgctgataccatctatgttaggagtctgttttctgctgggggcagcccaggt ttgctacattctgtctgcacctctgcacgatccaccttccatgctgtccccgcctccatc tgggaccgcctaatgctttttggtgtcacattagatgacgatgccttctgctgctccagg cccatgacctatcttcgtggtatatcttttaaggttgtggtcggtactcaggttgcaaac gaaggttggaccacggatgagtttgccctcacggctgttgttgtcgccgcttatctcact atctgccaccaaaggtggattcgcacacaggggatatctaaaggtgtgcgcagactaaca tttgagcatgcccaggggtttttaaataggctgctaaagtggtttggcaagaaaataggc ggtaagaaagatgatttcatcactgggcgccagttggagttctataagctttgtgaagat tgggtctctgctggttgttattttgatccccgtgctctttgttttgataagcagattact tgtccatgcaaatgtaccaagatcaaggctgcagttaaagccgtccgtgaaggcttcaag ctatgtgccccaaaggcttgtaaatgcataggcgccacttttcctggcttgtgttcttgt tttctcacaccccagacagacaacaaagaacccgaattatacagcccttctagtgaggcc agttctattgttgtgcaccctcaacctcaacccgctgcacccattgcagcttgttccacc gcgcagggtggcactgtttactaccccaaagggctggataattttacttgtaaggctgtt gcccgtgccctggctatcttccgggccactgccaagaaagaccccaataggtcgccttgt ttggatgcagttgcgcatatgtttttctgggcctcagccatttgggcacctgcaacccct gttgttgattctgccgctaaccctttctaccaggccagtaattatacatcaactgcatcc cgggcctccggctctctttatgacgcacttgcagcactgaaggaggagcgtattagagag ctggctaagggggatctggcattggctgaagagctcatggagatttcagagccagcccct agacctcagttgctccgtttcgagtctgctgtggatagcggcgttggttcgcctttgaca cctacattacccccatttgaggctcagcagtctgccggtctacctcctctgcctaagtcc cctgctgcccgcgttatccagaccttgcccgatggctctcagattctcgagggttcttta ttttctgccgactgtgattggcttgttaacgccagtaaccccgaccatatccccggcggc ggtgtatgtggccagttccatcgtaagttccctcaggcgtttgagcagccatggctgatg acgcagggcctaacagcctatacagcgacaccaaggcagataattcatgcagttgcccct gattatcgatcacaaaagcgcttgcgtacaatccagcaggcgtattatgagaccctctct cgtgttggcactgctgcttatcctttacttggtaccggcatctaccaagtcccattcggt gaatcaattaaagcctggattgagaatcaccggcccggcgacaaattgtatctcacaaat gatgccgcccagtggtacgagcataatagggacacatctcttattggcactaaaagttta gtcataaccccccaacaggccgctattgttaacatcgctttgcagaaagaggcatcgggc aattttgggaagtttgtgggtaatgccgttgttgcccccggactgtatcagtacctctat accgccggggtacctggctctggcaagagtactggtatacgccgtgaggatgtggatgtt gttgttgtgcccactcaacagttgcgacagcagtggcttgcccgaggctttaatgtgtac acgcagcatgccgccattcgccaggttcaaggtgtgcgtgttcttgttgatgaggcccct gccatgccacctcatattttatgctacattatgtcggtcgcctcctctgtccatctttta ggcgaccctaaccaaatccccgctttagattttgatcatactggtttagtagaggctatg cgcccgagattggaccccacagaatggcgcatggtttctcaccgctgccctcaagatgtt tgctaccttctggccgcggattaccctggcattaaaactacctccaagaaggtccgatcg ttggactttgtcaccccccccccacctgatgcacagaaaattgttttcacgcaggctgct aaatctatgtaccccgctgctataactgtgcacgaggctcagggctccacttttaatacc actgctctcattgtgactaatgaagcgcgaggcctcattatgtgttctcgtgcacatgca attgtggcgctcacacgccacgttgaaaaatgctatgttgtggataaacctgggctttta aaagagattggtgtgtctgacgccatattgggtaacttctatcagtctggggctatgcag ttttattctagaccttctgatgttgaacgacctgaagcaggccccgtttctggtgaggca gatctactccctgcctcttgccaatttgcagctttacaccagcttagtgagtccaccggc catagaccacaggttgttagggcagttataccgccaggccctcctgttgaacagggaacg ctttacatgccttttaagcttgatggccgtgaggaggttgtgacattagccctctcggac actgtgcactgccgtatggcagcccccactcatcgcctggcggttcttactactcttgtc ggccggtatgccaagaagactagatattgggccgaaccagttcaaccggttaggcgtagt cttgagaaattcatacctaagctgccgcgtgttgtcccgtccactgtggaattgggtgag cttgttaaagctatgcaggataaaggccaggatggctcgctggttgttcaattagatctt gccgacaaggattgcacacgtataacgtttttccagaaggactgtaacaagttcaccctt gatgaaaccatcgcacatggcaaggttggccagggcatatcggcttggtctaagactgct gtcgccctctttggggtttggttccgggctatagagaaggccatagtagatgttctccca cctaatgttctgtatggtgatcagtatgcccctgaaaccctctcttcacttgttgagtct gcaaatttcatgcgtgttttcgagaatgatttctccgaatttgacagtacccaaaataat ttctctcttgccttggagtgtgagataatggttgaggttggtatgcctttatggcttgtc aatttataccatttaataaggtccgcctgggttcttcaagccccgcaggaggggctcaag ggcgtttggaagaagcattccggcgagccgggcacattgttatggaatacagtttggaat atggctgtgattgcccattgttatgagtttcaggacttggctgttgctgcatttaaaggt gatgactctgttgtctgttgttctatgtacactagcatggcgagggccgctgaccttatc accggttgcggcttgaagctgaaggttaactttaacgatgtgggtagctttgctggtcta attgtatgtcctggtgttggtgttgtgtgtgatgtagttcgttttgtgggccggctaaca gagaagaactggggtccgggctcggaacgtacagaggaacttagggaagctgttgtcgac tttttaaagaaaattgctaattgtactaaccttgtttgcatgttaaattcaatgtactat ggttatggtcagggtcttatcatgaatcttgttggtcttcttaaaactgttgttgagggc cgggcctcatttgttgagcttgtacaaccagttttgaagttggttaatgtggggaagaaa gaataa

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