Viruses: 80543830
Help
Entry
80543830 CDS
T40000
Symbol
RdRp, QKU77_gp1
Name
(RefSeq) Agapanthus carlavirus B; RNA-dependent RNA polymerase
KO
K26628
Betaflexiviridae RNA replication polyprotein
Virus
2838076
Agapanthus carlavirus B
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
RdRP_2
Viral_helicase1
Peptidase_C23
AAA_22
AAA_19
DEAD
AAA_16
AAA_14
ResIII
AAA_30
ATPase_2
AAA_18
AAA_29
VinK_C
Motif
Other DBs
NCBI-GeneID:
80543830
NCBI-ProteinID:
YP_010804981
RS:
NC_077096
UniProt:
A0A8E7UE35
LinkDB
All DBs
Position
NC_077096:61..6087
Genome browser
AA seq
2008 aa
AA seq
DB search
MALTYRSHIEDVMTSFTSAEQSTISAIAVNGYRKLETENFDLFNYGLSPRVKEKLSKSGI
YLSPYSGIAHSHPACKTLENYMLYKVLPSYIDASFYLVGIKKNKVDFLKKRNKNMDTVSV
INRYVTSKDKMRYGSDFVRLSAEMPSTSGRNFESTEGANDWVPKSLRGKGRNFFLHDEIH
YWPKEQLISFLESVRPKTLLATLVCPPELLTGAKTSFNKWCYEFEIIENSVFFYPDGCRS
EGYFQPLKCTELLGTNKIELDDGSVYCVDLLHSKFAHHLIAITEGELITETRRSFGNFEA
ISTKHIDRLSRNAGAAFPISFQTVSKIYRYLRTLQKPDLQSAMAKLSQIVPEPTGFEIKF
IQEFAHFVITTDSGKKHLLTDLMSLFKAKMFSLLPDLIAKHSGDFKSFCLDEFINDLAEY
TFIIELKTMRRDRTIISIAKEVLGTEDVELEKEVDIEGFFTGTAQYEYEKNFTYRKATSS
LVEGKFELEFSSSRFLNSISNLFKKSYMNDYSMCVNECDVTEILGVLFSKRGCTFAGILK
TLQKEETCKTIFNRTRLAFLRNKRVFIDECSVFRWFLNQTWRRGNMKYLEYAPTSAFLNK
GLWGKIILEVKNFDSSSLRHNIDAVRLHKNRGSSNGGSSSCSKTTRANEQSDDINVSSVR
GHASVEDKFFMASSNGKTAPLAIECNIENQPERVVENVCIEISNDPQLAGFLDLISKQCL
KDNTSIVSAWHIAGSKESAISDLMTKVPIFDELLSSGDSGSKSHFLIWSEEFFVDLLTNF
LDFFVNAKITPFISTDLAFKKCILDINSFDCRTILALSVQFNSDPTIATPGQRSNEPRIE
EIADDSATIKEADSIPSDCVIEESSESELELEADGNCEVYYGACKVSSKQVKNSMKTFKE
ISVPADGDCFWHSIGYFVDLNGTEVKSITREKMTTAMHSDPELHRQMSKQFEYAEKEAIA
AACVAFKMEIRVHLVEGSLVETFDCDGSECAINLKLSRNHFCPVVPKNDCSVIALCEALG
RSYSDILKVLSYKENLWMLAEITDGEGASIETVEKMFKVFGLNATLSTAEGVEILNEEGR
IKRNFTLDEGHLTYIKKGNLDGEERVRVLRRNSYSPASISLIEKAGTKYDFKPDLKRAKK
LSSSLHQGLTGVISSELFNQKRELIQEETHEPLVRQINVITGTFGSGKSTLFKEFARRNP
MSNILFVTPRKSLAKSIEEELLQSLESETSIKVTAYNRSIKPNSEKGNHGKRLPKNFEIL
TFEKFLHKAGRVKNGQCVFIDEMQLYPPGYLDLVLCLIKVEHVKIFIFGDVCQSDYDNEK
DRNIFMDETPCLAKILEGTVYKYAIRSLRFLNSNFIGRLPCTITNKCPINEPYLIFNSME
DFVQAKPENIEVCLVSSFEEKQILKYRVEKQCEVLTYGESTGRTYNLGLILITQSSYYTN
ERRWLTALSRFKRNIVFLNLTGETFENVTKMYADRALGKFVYKTATNKDLTDALPGFPNL
IDSYAQKVGKDQGKREEKVMGDPWLKSMIELAQIEDQEVETLEEVLPKDYYFKTHLPRSN
IESIRANWLHRLEAKEFRERYIRGLVTDQFKDDHHKGQGIRLTNAAERFEAIYPRHKTSD
TATFLMAVRKRLRFSKPSVECAKLNEAKNFGEHMLKLFLKKVPIKPCHNERFMNEARHEF
YEKKTSKSSSMIANHAGRSCRDWLADVGFIFIKSQICTKFEKRFVEAKAAQTIVCFQHAV
LCRFAPYMRYIEKKLFEVLPKNFYVHSGKGLDELNTWVIQNNFSGVCTESDYEAFDASQD
HYIMAFELELMKYLGLPKDLINDYIYIKTSLGSKLGNFAIMRFSGEASTFLFNTMANMLF
TFMKYDLNGSESICFAGDDMCASKKLRLHDEHKSFLDRLRLKAKVNFVKKPTFCGWNLTL
YGIYKKPQLVFERLCIAKETGNLANCIDNYAIEVSYAYKLGERIANLMGEEELENHYMCV
RTIIQNKRLIKSNVLKDFQNEHFDELKL
NT seq
6027 nt
NT seq
+upstream
nt +downstream
nt
atggccttgacttacaggagccatattgaagacgttatgacttcttttacttctgcggaa
caaagcacgatttcagcgatagcagtgaatgggtatcgaaagttagaaactgagaacttt
gatttgtttaactatggcctctctccaagagtcaaggaaaaactatcgaagtccgggatc
tacttaagcccatactctggaatcgctcactcgcatcctgcttgcaaaactctggaaaat
tacatgctctataaagttcttccttcttacattgatgcatccttctacttggtaggcatc
aagaagaacaaggtggatttccttaagaagaggaacaaaaacatggataccgttagcgtt
atcaatcggtacgttactagcaaggataagatgcgctacggttccgatttcgttagactg
agtgctgaaatgcctagcacgtcaggtcgtaattttgaatccactgagggggcgaatgat
tgggtccccaaaagtttaaggggcaaaggaagaaatttcttccttcatgatgaaatacac
tattggcctaaagaacaattaattagttttcttgaatcggttaggcctaaaacgcttctt
gctactcttgtgtgccccccggagctgttaacaggtgccaagacctcatttaacaagtgg
tgctatgaatttgaaattattgagaattcagttttcttttatccagatggttgcagatct
gaagggtactttcaacctttgaaatgtactgaactacttggcacgaataaaatcgagtta
gatgatgggtcggtatattgtgtggacttacttcatagtaaatttgctcatcatttaatc
gctatcactgaaggagaattgattacagaaactagaaggtccttcgggaactttgaggcc
atcagcaccaaacatattgacaggctctcccggaatgctggcgcggccttcccgataagc
tttcaaacagtgtccaaaatttataggtatttgcggacactccaaaaaccagatctgcag
tcagctatggcaaagctgagccaaattgtccctgagcctacagggtttgaaatcaagttc
atccaagaatttgcgcactttgtgatcacaacagattccggcaaaaaacatttattaacg
gatttaatgagcttgtttaaagctaaaatgtttagtctattgcctgatctgattgcaaag
cactctggcgatttcaaaagtttttgcttggatgaattcatcaatgatttggccgaatac
acatttataattgaactgaagaccatgaggcgcgataggaccatcatctcaatcgcaaag
gaggtactaggcactgaggatgttgaactggagaaagaggtggatatagaggggttcttc
acaggcaccgctcagtatgagtatgaaaagaactttacatacagaaaagccacgagcagc
cttgtggagggtaaatttgaacttgaattctccagttcaagatttctcaattctataagt
aacttatttaaaaagagttatatgaacgactactccatgtgcgtaaatgagtgcgatgtc
acagaaattctgggggtcctattcagcaaacgggggtgcacatttgcaggaatactgaaa
acattgcaaaaggaagaaacctgcaaaacaattttcaacagaacaagattggcttttttg
agaaataaaagggtttttattgatgagtgcagcgtattcagatggtttctgaatcaaact
tggcgcagaggtaatatgaaatatttggagtacgcgccaacttctgccttcctcaacaaa
ggactgtgggggaaaataatcctagaggttaaaaattttgacagcagctcattgaggcac
aacattgatgcagtgaggctgcacaaaaacagaggttccagcaacggtggaagttcaagc
tgcagcaagacaactagggccaacgaacagtccgacgatataaatgtgtccagtgtaagg
ggacatgcttctgttgaggataaattttttatggctagttctaatgggaaaactgcgcca
ctggctatcgagtgcaatattgaaaatcagcctgagcgggttgttgaaaacgtttgtata
gaaatttctaatgaccctcagctggcgggcttcttggacttgatcagtaagcaatgttta
aaagataacacatccatagtcagtgcttggcacattgcaggtagtaaagaaagtgccata
tctgatctaatgaccaaagtcccaatttttgatgaattgctcagcagtggggattcggga
agtaaaagccatttcttgatctggagcgaggaattttttgtagatttactgactaatttc
cttgatttttttgtaaatgctaaaataaccccttttatttccacagatttagcttttaag
aaatgtatcttagatattaactcttttgattgtcgcactattttggctttaagtgtgcaa
ttcaattcagatcctacgattgcaactcctggccagagatcaaacgagcctaggattgag
gagattgccgacgatagcgcaaccatcaaagaagctgactccattccctctgattgtgta
atcgaggaaagcagtgagtcagaacttgaattagaggcagatggtaattgtgaggtgtat
tatggggcctgcaaagtttcaagcaagcaggtcaagaattcaatgaagacattcaaggaa
atatcagtcccggcagacggcgattgcttttggcattctattggttactttgttgatcta
aacggaacagaagtcaaatcaatcaccagagagaaaatgaccactgccatgcatagtgat
cctgaattgcataggcagatgtccaagcaattcgaatatgcggaaaaggaagccattgca
gcggcttgtgttgcgttcaaaatggaaataagggtccacttagtcgaaggttcactcgtt
gaaaccttcgactgtgatgggagcgaatgcgccataaatctgaagttatcacgcaaccac
ttttgcccagttgtgcccaagaacgactgctctgtgatagctttgtgcgaggccctggga
aggagttattccgatatattaaaagtcctgagctataaggaaaatttatggatgttggcg
gagatcactgatggtgaaggcgcttcaattgaaactgttgaaaaaatgtttaaggtattt
ggattgaatgctacattgagcacagcggagggggttgaaattttaaatgaagagggtcgg
atcaagcgaaatttcacgcttgatgaagggcacttaacctacattaaaaaagggaatctt
gatggagaagaaagggttagagttttaaggaggaactcatactcacctgcttcaataagt
ctgatcgaaaaggccggaacaaagtatgacttcaaaccagacctgaagcgcgccaagaaa
ctaagtagcagtctgcatcaaggacttacgggtgtgatatcttcagaacttttcaatcag
aagagagaattaattcaagaagaaacccatgaacctctggtcaggcaaatcaacgtaata
accggaactttcggatcagggaagagtacactctttaaagaattcgccagaagaaatccc
atgtcgaatatcttatttgtgacaccgaggaagagtctagcgaaatcaattgaggaagag
ctccttcaaagtttggaatctgaaacgagtatcaaagtaacggcctataatcggagcatt
aagcctaacagtgaaaaagggaatcatgggaaaagattgcctaaaaattttgagatcttg
accttcgagaagtttctgcacaaggctggaagagttaaaaacggccaatgtgtatttatc
gatgagatgcaattgtatcccccaggctaccttgatttagttctgtgcctcataaaggtt
gaacatgtaaagatatttattttcggggatgtgtgccagagtgattatgacaatgaaaaa
gatagaaacatttttatggatgaaaccccatgcttggcaaagatactagaaggcactgtg
tacaaatatgctataagatctctacgatttctcaacagtaattttataggcagactaccc
tgtactataaccaacaaatgcccaatcaatgaaccttatttgatattcaatagtatggaa
gattttgtgcaagctaaacccgagaatattgaagtttgcttggtgagtagttttgaggag
aagcaaatccttaaataccgagttgaaaaacagtgcgaagtactaacttacggggagtcc
actggtaggacttataaccttgggcttatactaatcacacaaagttcatactacactaac
gaaagaaggtggttaactgccttaagtagatttaagaggaatatagttttcttaaattta
actggcgaaactttcgagaacgtaaccaaaatgtacgcggacagggctctaggcaaattt
gtttacaaaacggcaactaataaagacctcactgatgcattgccaggttttccaaattta
atagatagttatgctcaaaaagtagggaaagatcagggcaagagagaagaaaaggtcatg
ggggacccttggctcaagagtatgattgaactggctcaaattgaagatcaggaggttgaa
actttagaggaagtgctgcccaaagattactactttaaaactcacttgcctagaagtaac
attgaaagtattcgagcgaattggctacataggcttgaagccaaagaatttagagagagg
tacataaggggcctagttactgatcaatttaaggatgaccaccataaagggcaaggaatc
aggttgaccaatgcagctgagcgattcgaggcgatctaccctcggcacaagactagtgac
acagccacctttttaatggctgtgagaaaaagactacgcttctctaaaccttctgtggag
tgtgccaagttaaacgaagcaaagaatttcggggagcacatgctaaaattattccttaag
aaagtgcctataaagccatgccataatgagagattcatgaatgaagcgaggcatgagttc
tatgaaaagaaaacaagcaaaagttcttcaatgattgcaaatcatgctggtagaagttgc
agggactggcttgcggatgtgggcttcattttcatcaagtctcaaatatgcacaaaattt
gagaagcgtttcgtggaagccaaggcggcacagaccattgtttgcttccaacatgcagta
ctatgcagatttgctccctacatgaggtatattgaaaagaaattatttgaagtcctaccc
aaaaacttctatgtgcacagtggcaaagggctggatgagctcaatacttgggtgattcaa
aataattttagtggtgtatgcactgaatcggattatgaagcttttgatgcctcccaagac
cattacataatggctttcgaactggaattaatgaaataccttggactcccaaaggatttg
atcaatgattacatctacatcaaaacctcccttggttcgaagttgggaaacttcgcgata
atgcgattctctggagaagcaagtacatttcttttcaacacgatggcgaatatgctgttc
acatttatgaaatatgatctgaatggcagtgagagcatttgcttcgcaggtgatgatatg
tgtgcctcaaaaaaactgcgtttgcatgacgagcataaaagtttcctggacaggttgaga
ctgaaggctaaagtgaattttgttaagaagccaacattttgtggatggaatctcacgctt
tatggtatttacaaaaaaccacaacttgtatttgaaagactatgcatagcaaaagaaaca
ggcaatttggctaattgcattgacaattacgccattgaagtgtcatacgcctacaagttg
ggtgaaaggatagcaaacctcatgggtgaagaagagctcgaaaatcattacatgtgcgtg
agaacgataatacagaacaagcgattgatcaaatctaatgttctcaaagatttccagaac
gagcactttgatgagcttaaattatag
DBGET
integrated database retrieval system
