Viruses: 8094707
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Entry
8094707 CDS
T40000
Symbol
HdCMV_gp1
Name
(RefSeq) Hydrangea chlorotic mottle virus; replicase polyprotein
KO
K26628
Betaflexiviridae RNA replication polyprotein
Virus
375546
Hydrangea chlorotic mottle virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
RdRP_2
Viral_helicase1
Peptidase_C23
2OG-FeII_Oxy_2
AAA_22
AAA_19
PhoH
Motif
Other DBs
NCBI-GeneID:
8094707
NCBI-ProteinID:
YP_002985636
RS:
NC_012869
UniProt:
B3VKH1
LinkDB
All DBs
Position
NC_012869:62..5911
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AA seq
1949 aa
AA seq
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MALTYRSPVEEVLTLLEPASQSLIANTATTSYQKAEKENFSWFNYSLPAIAKEHLSRAGI
YLSPFSGYPHSHPVCKTLENYLLYRVLPDIINNTFYFVGIKGFKLNFLKKRFDKLSLVSA
INRYVSSADKIRYGNEFVVRASSESRLLKRHCGLFDSPTLRDLVPNVKTGSNLFMHDELH
YWSKNDLIAFLEICKPEVLLGTLVYPPEIFVGASYSLNPWCYEFEVRNNKLFYYPDGVRS
EGYEQPLEGGFLLQTSKIRLADGVVYCVDLICSKFSHHMVSITRGELVVPTYRSFGPFEA
IKSDGLKDISRGEVCFFPISHPMLLRVYRYLRSLKKPDKQSAMAKFSQLNHDPSGLAVKF
MEEFSDLVISTGSIRSMLNAEHVKLFFANLGRKLPSVLSAKIKATRMVCLDDFIANLKPL
CVDVKLREIQRSSKFDFKFFHEEEIEDDFDLEESIELSWRGCGVLDRVSMPYVGTSTHRE
QCVTWDGDFNKAALLRKLKDLYVHAFCGETHTALIDVASYVALLRGKCNLLASTVLASLS
QADLFRVHNHVRNTHHILFGWHGERVKWFLRPNNQKAYMRYLGSNVPLGCTHHMEMVTHG
FMGKRRPVRYNWLNTCGEDTVERSVLYEPVVVRESVAPQGTMHEEVAAATDRDVLKRPTD
LCTVQCACGLSMAVRSVPYADLRQDYYPDKLKNRQCAWYSVGEVNYKYNGGDHVSRGWPE
WLTLWMQVNEIPDKYDCMLAQKYEEGAQIGFHADDEGIFESGESILTVNVMGSACFKIKC
GAGCSAFELTDAIQFTMPENFQCTHKHAVEVKSAGRISFTFRVLRKQDVTVKAAHALNEQ
LGHTTIMCGVTIAVEPCQKFSSISYDVIRNRGGGDCFWLAMEYYTGVNVQTAKAGLLNVE
WDEDYKPRLLKQLLDKAWAEDEAISAACKHFGFNIVVYDIPQNCRLRYSTSANKRTAMLK
LDAGHSRRLEPVELCTIRAISQAVKRTDKDVLVVLLQSLGDNFEKELLEGKGVQMDMFLQ
MLEVFDIAGMVESQAGTHLYNAQGAIKCNFKCSGNHIEYVKDKMFSSLEHFNVSDGNLGV
EEEKLSSLYEKSNAIEYYPDIARAKILADSLHEGTTGVLCSELYNGAGNLLDSAKVDESK
KVVHAFIGTFGCGKSRLFTELLERMRGKALCYVSPRRALCGIFEEVIQRTVKTIGKSGAQ
HFKCYTFEKFLKRLNKLTADAVVVLDEIQLYPPGFLDLVLLLLSVKTRLFVLGDPCQSDY
DSEKDRAILGPLQPDIKRLLEGRTYRYNISSYRFQSAVFEGRLPCAFASDLDQSVRKLKL
LEGLDAIDARANYAKVALVSSFDEKKIVQAYFGSECQCLTFGESTGLTFQEGCIMVSDLS
ARTNEQRWLTALSRFRRNVVLINATSTNWHVIEKQYQKRALGRFLSRSAKQEDLLELLPG
EPIFTKGFEGEHYGADEGKREDKLAGDPWLKTMIDLLQVEDMMEVEMIQEIVENVWFRTH
LPQCELESVRASWVHRILAKEFREKRMGYLVSEQFTDEHSKQPGKILTNAAERFETIYPR
HRASDTVTFIMAVRKRLRFSSPMKESAKLSQAMPYGPFLLREFLKRVPLKPMHNKDMMAQ
AKFEFEEKKTSKSAATIENHSNRSCKDWLADVGMVFSKSQLCTKFDNRFRDAKAAQTIVC
FQHSVLCRFAPYMRYIEKKLHEVLPEKYYIHSGKGLEELNSWVQIGRFDSLCTESDYEAF
DASQDQYIMAFEICLMRYLGLPNDLIEDYTYIKTHLGSKLGNFSIMRFSGEASTFLFNTM
ANMLFTFLQYDIKGDERICFAGDDMCSNKKLHKSEKHEGFLGKLKLKAKVCHTSSPTFCG
WNLSPDGIFKKPQLVLERMCIAKETNNLANCIDNYAIEVSYAYLMGERAKERMSEEEVDA
FYNCVRIIIKNKHLLKSDVRHVYETNIDL
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atggctctaacatacaggagtccagtcgaggaggtgttaacactacttgaacctgcatca
caatcgctaattgcgaatactgcaaccactagttaccagaaagctgagaaagagaatttc
tcatggttcaattatagcttaccagcaatagctaaggaacaccttagcagagcaggtatc
tatctgagcccgttttctggctacccccattcacacccagtctgtaaaacattagagaat
tacctattgtatagagtactacctgatataattaacaatactttttattttgtaggtatt
aaaggctttaagcttaatttccttaagaaaaggtttgataaacttagcttagttagtgct
ataaatagatatgtaagtagtgcagataaaataaggtacggcaatgaattcgtagtaaga
gccagctctgaatcgagattgttaaaaaggcattgcgggcttttcgactcaccaacattg
agagatctggtgcctaatgtaaagactggctcgaatttattcatgcatgatgaattgcac
tattggtcgaaaaatgacctaattgcattcttagagatctgcaagccagaggtcctgcta
ggtactctagtctatccccctgagatctttgtaggggcatcttattcgctgaatccttgg
tgttatgagttcgaagtgcgtaataataagctattttattaccctgatggtgtcaggagc
gagggttatgagcagcctttagagggtggtttcttgctgcaaacttccaaaatccgcctg
gcagacggagtggtttattgcgtggatttaatatgcagtaagttctcacatcatatggta
tcaatcacgcgcggtgaactcgtagtgccaacatatcggtctttcggccctttcgaggcg
atcaagagcgatggtctgaaagacataagtcgaggcgaggtgtgcttctttccgatttca
catccaatgttgctccgggtgtatcgttacctgcgatctcttaaaaaaccggacaagcaa
tctgctatggccaaattctcacaacttaatcatgatccaagcggacttgcggtaaagttt
atggaggaattcagtgatctggtcataagcacgggaagcatacggagcatgctcaacgcc
gaacatgttaagctcttcttcgcaaatttaggcaggaaactgcctagtgttctgtcggca
aaaataaaggctacgaggatggtttgccttgacgacttcatcgctaacttaaaacccttg
tgcgtggatgtgaaattgagagaaattcagcgatcgagcaaatttgatttcaaattcttc
catgaagaggaaattgaggatgattttgacttggaagaaagcatcgaactaagttggaga
ggatgtggtgtgcttgatcgcgtgtctatgccatacgtagggacatcaacacatagagag
cagtgcgtcacgtgggacggcgatttcaacaaggcagctttactgcgcaagttgaaagat
ctgtatgtgcatgctttctgtggggaaacgcacacagctttgattgatgttgcgagctat
gtggcccttttaagagggaagtgtaacttgctcgcaagcacagtacttgcgtcattgtcg
caggcagatctatttagggtacacaatcatgtcaggaatacacatcacattctgtttgga
tggcatggagagcgtgtgaaatggtttttgaggccaaacaaccagaaagcatacatgagg
tacttgggaagtaatgtaccgctgggctgcacgcaccacatggagatggtaacccatggc
ttcatgggtaagagaagacccgtgcgctacaactggttgaatacgtgtggtgaggacaca
gttgaacgctcagtgctgtacgagccggtggtagttcgcgaaagcgtggcaccgcaagga
acgatgcatgaggaagttgctgctgctacggatcgtgatgttttgaagaggcctacagat
ctatgtactgtacaatgcgcctgtggcctgtcaatggctgtccgttctgtgccgtacgca
gatctgaggcaagattattaccctgacaaactcaaaaataggcagtgcgcttggtattct
gtgggggaagtaaactataagtacaatgggggcgatcacgtttcaaggggatggccagag
tggcttacgttgtggatgcaggtgaatgaaatcccagataaatatgattgcatgcttgcg
caaaaatatgaggaaggtgcacagatcggttttcatgccgatgatgagggcatatttgag
tcaggcgaaagcatcttgaccgtcaatgtgatgggaagtgcatgctttaaaattaaatgc
ggcgcaggctgtagtgcctttgagctcacagatgcaatccaattcaccatgcccgagaat
tttcaatgtacacacaaacatgcggtggaagttaagagtgctgggcggatatcgttcaca
ttcagagtgctacgcaagcaggatgttactgtaaaggcagcacacgcacttaatgagcaa
ttggggcacaccacgataatgtgtggtgtaactatcgcagtcgagccctgccaaaaattc
agcagcatctcctacgatgtgatcagaaatagaggaggtggtgactgcttctggctcgca
atggagtattacactggcgtgaacgtacaaacggccaaggcggggctactaaatgtggag
tgggacgaggattataagccgagactattgaagcagctgctagacaaagcatgggccgaa
gatgaagctataagcgctgcatgcaagcattttggttttaacatcgtcgtatacgatatc
ccacagaattgtagactgcgctacagcacaagtgcaaacaagcgcacagcgatgctaaag
ctcgatgcgggccattcgaggcgattggagccagttgagttgtgcacaataagggcgatt
tcccaggcggtcaagcggacggacaaggatgtgctagtcgtgcttctacagtcgttggga
gataattttgagaaagaattgcttgaaggaaagggggtgcagatggatatgtttttgcag
atgctagaggtgtttgacatcgctgggatggtcgagagccaagcaggcacgcatctatac
aacgctcaaggtgctattaagtgcaattttaagtgcagcgggaatcacattgaatatgtg
aaggacaagatgttctcatcgctagaacacttcaatgtgtccgacggcaatctcggcgta
gaggaagaaaaattgagcagcctctatgagaagagcaatgcaatagagtactacccggac
attgccagagcgaaaattctcgcagattcgctgcatgaaggcactacaggcgtgctttgc
tcggagctctataacggtgcaggaaatttattggacagcgcaaaggtagatgaatcgaag
aaggtagtgcatgcattcatagggaccttcggctgtggaaagagtcgacttttcactgag
ctgttagagcgcatgaggggcaaggcgttgtgctatgtttcacccagacgtgcactctgt
ggtatatttgaggaggtgattcaaaggactgtaaaaactataggcaagtcgggcgcgcag
cattttaaatgttacacctttgaaaaattcctcaagaggctgaacaagttgactgcagat
gcggtggtggttttggatgagatacagttgtacccgccggggttccttgatttggtcctg
ctcttactatctgttaagacacgtttattcgtgttgggcgatccctgccaaagcgattat
gattcagagaaagatagggcaatccttggaccgctccaaccggatattaagcgcttgctt
gaagggaggacttatcggtacaacatatcgagctaccgatttcaatctgcggtctttgaa
ggacgtttgccgtgtgcctttgcatctgacctagatcaatccgttcgtaaattgaagctg
ctggaggggttagatgcaatcgacgcgagggcaaattatgcaaaagtggcgcttgtctcc
tcatttgatgagaagaagattgttcaagcttatttcgggagtgagtgccaatgcttgaca
ttcggtgaaagtacaggcttgacgtttcaagaaggctgcataatggttagtgacttatca
gcgcgcaccaatgagcaaagatggctcaccgctttgagtcgtttcaggagaaatgtggtg
ctaataaatgcaacaagtaccaattggcatgtaatcgagaagcaataccaaaaacgtgca
ttaggccggtttttaagccgatcagctaagcaggaggatttgcttgaacttttacctggt
gaaccaattttcacaaaaggatttgagggtgaacactatggagcggatgaaggcaagcga
gaggataagctcgcaggggacccatggctcaaaactatgattgatctcctgcaagttgag
gatatgatggaggtagaaatgatacaggagatagtggaaaatgtttggttcagaactcac
ctccctcaatgcgagcttgaaagtgtgcgagccagctgggtgcacaggatcttggctaag
gaatttagagagaaacgcatgggttacctcgtttcagagcagttcactgatgagcattcg
aaacaacctgggaaaatccttacgaacgcagctgagcgtttcgaaacgatttacccacgg
catagagcatcagatactgttacctttattatggctgttagaaaacgactgagattttct
agccctatgaaggaatcagcgaaattgagtcaagcaatgccctatggtccatttctgctt
cgggaatttttgaaaagggtgcctctgaaaccaatgcacaacaaagacatgatggctcaa
gcgaagtttgagtttgaagagaagaagacgagtaagagtgcagcaactattgaaaatcac
agcaaccgctcatgcaaggattggctcgctgatgttggtatggtcttctcaaaatcacaa
ttatgcacaaaatttgacaatcgtttcagagatgccaaagccgcgcaaacgatcgtatgt
ttccaacattcagtgctttgtcgctttgcgccgtacatgagatatatcgagaagaaactt
cacgaggtgttgcccgagaagtattacatacattccggaaagggtttagaggagcttaat
tcatgggtgcaaatagggcgttttgactcattgtgtactgaatctgattatgaagcgttt
gatgcgagtcaagatcaatacatcatggctttcgagatatgcctcatgcggtaccttggc
ctgccgaacgacttgattgaagattacacctacatcaagacccatctgggatccaagttg
gggaatttctcgatcatgcgcttttctggcgaagcgagcacatttctcttcaacacgatg
gccaatatgctgttcacatttctacaatatgatatcaagggagatgagcgaatttgcttc
gcaggcgatgatatgtgttcaaacaaaaaactgcacaaatcggaaaaacacgaagggttt
ctggggaagctaaaattaaaagccaaggtgtgtcacacttcaagtccaaccttctgcggg
tggaacttgagtccagacggaatcttcaagaaaccacagctcgtgcttgagcgtatgtgc
atcgccaaagaaaccaataacttggccaactgcatagacaattatgcaattgaagtttcc
tatgcttatctgatgggtgagagagccaaagaacgtatgagtgaggaggaagttgacgct
ttctacaattgcgtgcgaatcatcatcaaaaacaagcacctgctcaagtccgacgttcgt
catgtgtacgagacgaacattgatctgtag
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